Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq60 174 3e-38 seq114 170 4e-37 seq2314 118 2e-21 >seq60 Length=8765 Score = 174 bits (192), Expect = 3e-38 Identities = 366/540 (68%), Gaps = 26/540 (5%) Strand=Plus/Plus Query 25793 GTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCA 25852 |||||| |||| ||||| | |||| |||||| ||||| || ||||||| Sbjct 2520 GTGCCACCGAGACGGTACCCGTGGTGAAGAAGAAGGCCGACTGGGCTCTGCGCTGGATCA 2579 Query 25853 ACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCAT 25910 || || | ||| ||| ||| ||||| ||||| || ||||| ||| ||||||||||| Sbjct 2580 ACGGCTCGGAGAGCT----TTGCGGAGCGCCTGGTGGCGTTTGCGTGC-GTGGAGGGCAT 2634 Query 25911 CTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCG 25969 || |||||||| || ||| |||||| |||| ||||| || || |||||||| Sbjct 2635 TTTCTTCAGCGGCAGCTTCTGCT-CCATCTACTGGGTCAAGAAGCGCGGTCTCATGCCCG 2693 Query 25970 GGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCT 26029 | || ||||||||||||||||||| | || ||||| || |||| || ||||||| Sbjct 2694 GCCTCACCTTTTCCAACGAGCTCATCTCTCGTGATGAGGGCCTGCACACCGACTTTGCCT 2753 Query 26030 GCCTGCTCTACACGGGCCACTTGCTCCA-CAAACCTTCTCAAGAGACCGTCT--ACAGTA 26086 ||||||||||| | | ||||| | || | || | | || ||||| || Sbjct 2754 GCCTGCTCTACTC------CATGCTCGAGCACCCGCTCGCCATCGAGCGTCTGAACCAGC 2807 Query 26087 TCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNN 26146 || | ||||| ||||| ||||||||||||||| Sbjct 2808 TCGTGGGCGAGGCCGTGGAAATCGAGAAGGAGTTTGTCTGCGATGCCCTGCCGGTGGATC 2867 Query 26147 NNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGC 26206 | ||||||||| || || |||||||| |||||||||| |||| ||||| |||| Sbjct 2868 TCATCGGCATGAACGGCAAGCTGATGAGCCAGTACATTGAGTTTGTGAGCGACCGGCTGC 2927 Query 26207 T-GT-GCCAGCTGGGACTCGCCAGACTCTACAGTACGC--CTAACCCGTTCGACTTTATG 26262 | || ||| ||||| ||| ||||||| |||| | || |||||||||| ||| Sbjct 2928 TCGTCGCC--CTGGGTGCGCCCAAGCTCTACA--ACGCCACCAATCCGTTCGACTGGATG 2983 Query 26263 GAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322 || ||| ||| || | || ||||||||||| || || ||| | ||||| ||||| ||| Sbjct 2984 GAGCTCATCTCGCTGCAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGAGACTACCAA 3043 >seq114 Length=7431 Score = 170 bits (188), Expect = 4e-37 Identities = 387/572 (68%), Gaps = 15/572 (3%) Strand=Plus/Plus Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 ||| ||||| ||||||||| |||||| | || |||| | |||||| || || || Sbjct 846 GGCGAGGTTGCACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACGATCTCGGTGCACAG 905 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 ||||||||||||||| || ||||||| | || || |||| ||| |||||||| Sbjct 906 GTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCGTTGCAGGCGTCCTT 965 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 ||| ||||| |||| ||| |||||| ||| ||| ||| ||| | ||| || | Sbjct 966 GTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGCCTCCAAAATGGCGAACCACAGCTG 1025 Query 221893 TCTG-GCGCTCACCGTCCTCTTGACTGCAC---CCTCGGTCTTTTCATACCCGGTATAGA 221948 ||| |||| || |||| ||| || | ||||| || | |||| | |||| Sbjct 1026 -CTGCGCGCGCATCGTC---TTGCGCGCGCGGCCCTCGCGCT---CGTACCGCGCGTAGA 1078 Query 221949 GCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGC-GGGACACATC 222007 || ||||||| || || | || ||||||| || | ||| | ||| || | | Sbjct 1079 GCGACTCAAACTCGGGGCCCCACACGTCCGCCAGGCCCGG-CGCCTCGTTGGGGCAGAAC 1137 Query 222008 AGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCC 222067 || ||||| ||| || | | ||| | || ||| || ||||| |||||||||||| | Sbjct 1138 AGGCTCCACTGCCCGTCCGCCTCGACGCGCTTCATAAACAGGTCGGGGATCCACAGCCCG 1197 Query 222068 TGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAAC 222127 | || || || | || || ||||||| ||||| ||| || | ||| |||| | Sbjct 1198 TAGAACAGGTCGCGGGCGCGAGCCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCCAGCCAG 1257 Query 222128 TCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTG 222187 || | | ||| |||||||| |||||||| || || || | ||||| |||||| | Sbjct 1258 TCCATCACGTCCGCGTGCCAGGGCTCCAGGTACACCGCAAAGGCGCCCTTGCGCTTGCCG 1317 Query 222188 CCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCG 222247 || ||||| ||||| || || ||||||| | ||| || | || |||| ||| Sbjct 1318 CCGCCCTGGTCCACGTACCGAGCCGTGTCGTTGAACACGCGCAGCATGGGCACCACGCCG 1377 Query 222248 TTGGATCG-ACCGTTGGTGCCCTTAATGTACG 222278 || | ||| |||||||||||| ||||||| Sbjct 1378 TT-GCTCGTGCCGTTGGTGCCCCGGATGTACG 1408 Score = 102 bits (112), Expect = 2e-16 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 221107 CATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGA 221166 || ||| | ||| ||||| ||| || ||||||||||| | | | ||| | ||| Sbjct 213 CAGGTGGTGGTTGACCACGGTGAACTCGCCCGAGAGCACGCGGCGCACGTAGATGTTGCT 272 Query 221167 AGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCAT 221226 ||| | || |||| || |||||||||||||| |||||| ||||| || |||||||| Sbjct 273 GGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGCTGGTGCTCGCCGTGGGCAT 332 Query 221227 GGGTGCCACCAGCAGACTGTTGCGCAGTCCG 221257 ||| ||||||||||| ||||||||| ||| Sbjct 333 GGGCGCCACCAGCAGCGAGTTGCGCAGCCCG 363 >seq2314 Length=1923 Score = 118 bits (130), Expect = 2e-21 Identities = 129/166 (78%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 25877 AGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGC 25934 |||| ||| | || ||||| ||| |||||||||||| |||||||| | || |||| | Sbjct 1833 AGCGCCTGCTGGCGTTTGCGTGC-GTGGAGGGCATCCACTTCAGCGGCGCCTTCTGCG-C 1776 Query 25935 CATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCAT 25994 ||||| ||||||||| || || |||||| ||||| |||||||||||||||||| Sbjct 1775 CATCTACTGGCTCAAAAAGCGCGGCCTCATGCCGGGGCTCACCTTTTCCAACGAGCTCAT 1716 Query 25995 CAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 |||||||||| || |||| || |||||||||||||||||| Sbjct 1715 TTCTCGGGACGAGGGCCTGCACACCGACTTTGCCTGCCTGCTCTAC 1670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928779014567040