Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq60 174 3e-38
seq114 170 4e-37
seq2314 118 2e-21
>seq60
Length=8765
Score = 174 bits (192), Expect = 3e-38
Identities = 366/540 (68%), Gaps = 26/540 (5%)
Strand=Plus/Plus
Query 25793 GTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCA 25852
|||||| |||| ||||| | |||| |||||| ||||| || |||||||
Sbjct 2520 GTGCCACCGAGACGGTACCCGTGGTGAAGAAGAAGGCCGACTGGGCTCTGCGCTGGATCA 2579
Query 25853 ACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCAT 25910
|| || | ||| ||| ||| ||||| ||||| || ||||| ||| |||||||||||
Sbjct 2580 ACGGCTCGGAGAGCT----TTGCGGAGCGCCTGGTGGCGTTTGCGTGC-GTGGAGGGCAT 2634
Query 25911 CTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCG 25969
|| |||||||| || ||| |||||| |||| ||||| || || ||||||||
Sbjct 2635 TTTCTTCAGCGGCAGCTTCTGCT-CCATCTACTGGGTCAAGAAGCGCGGTCTCATGCCCG 2693
Query 25970 GGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCT 26029
| || ||||||||||||||||||| | || ||||| || |||| || |||||||
Sbjct 2694 GCCTCACCTTTTCCAACGAGCTCATCTCTCGTGATGAGGGCCTGCACACCGACTTTGCCT 2753
Query 26030 GCCTGCTCTACACGGGCCACTTGCTCCA-CAAACCTTCTCAAGAGACCGTCT--ACAGTA 26086
||||||||||| | | ||||| | || | || | | || ||||| ||
Sbjct 2754 GCCTGCTCTACTC------CATGCTCGAGCACCCGCTCGCCATCGAGCGTCTGAACCAGC 2807
Query 26087 TCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNN 26146
|| | ||||| ||||| |||||||||||||||
Sbjct 2808 TCGTGGGCGAGGCCGTGGAAATCGAGAAGGAGTTTGTCTGCGATGCCCTGCCGGTGGATC 2867
Query 26147 NNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGC 26206
| ||||||||| || || |||||||| |||||||||| |||| ||||| ||||
Sbjct 2868 TCATCGGCATGAACGGCAAGCTGATGAGCCAGTACATTGAGTTTGTGAGCGACCGGCTGC 2927
Query 26207 T-GT-GCCAGCTGGGACTCGCCAGACTCTACAGTACGC--CTAACCCGTTCGACTTTATG 26262
| || ||| ||||| ||| ||||||| |||| | || |||||||||| |||
Sbjct 2928 TCGTCGCC--CTGGGTGCGCCCAAGCTCTACA--ACGCCACCAATCCGTTCGACTGGATG 2983
Query 26263 GAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322
|| ||| ||| || | || ||||||||||| || || ||| | ||||| ||||| |||
Sbjct 2984 GAGCTCATCTCGCTGCAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGAGACTACCAA 3043
>seq114
Length=7431
Score = 170 bits (188), Expect = 4e-37
Identities = 387/572 (68%), Gaps = 15/572 (3%)
Strand=Plus/Plus
Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772
||| ||||| ||||||||| |||||| | || |||| | |||||| || || ||
Sbjct 846 GGCGAGGTTGCACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACGATCTCGGTGCACAG 905
Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832
||||||||||||||| || ||||||| | || || |||| ||| ||||||||
Sbjct 906 GTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCGTTGCAGGCGTCCTT 965
Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892
||| ||||| |||| ||| |||||| ||| ||| ||| ||| | ||| || |
Sbjct 966 GTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGCCTCCAAAATGGCGAACCACAGCTG 1025
Query 221893 TCTG-GCGCTCACCGTCCTCTTGACTGCAC---CCTCGGTCTTTTCATACCCGGTATAGA 221948
||| |||| || |||| ||| || | ||||| || | |||| | ||||
Sbjct 1026 -CTGCGCGCGCATCGTC---TTGCGCGCGCGGCCCTCGCGCT---CGTACCGCGCGTAGA 1078
Query 221949 GCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGC-GGGACACATC 222007
|| ||||||| || || | || ||||||| || | ||| | ||| || | |
Sbjct 1079 GCGACTCAAACTCGGGGCCCCACACGTCCGCCAGGCCCGG-CGCCTCGTTGGGGCAGAAC 1137
Query 222008 AGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCC 222067
|| ||||| ||| || | | ||| | || ||| || ||||| |||||||||||| |
Sbjct 1138 AGGCTCCACTGCCCGTCCGCCTCGACGCGCTTCATAAACAGGTCGGGGATCCACAGCCCG 1197
Query 222068 TGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAAC 222127
| || || || | || || ||||||| ||||| ||| || | ||| |||| |
Sbjct 1198 TAGAACAGGTCGCGGGCGCGAGCCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCCAGCCAG 1257
Query 222128 TCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTG 222187
|| | | ||| |||||||| |||||||| || || || | ||||| |||||| |
Sbjct 1258 TCCATCACGTCCGCGTGCCAGGGCTCCAGGTACACCGCAAAGGCGCCCTTGCGCTTGCCG 1317
Query 222188 CCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCG 222247
|| ||||| ||||| || || ||||||| | ||| || | || |||| |||
Sbjct 1318 CCGCCCTGGTCCACGTACCGAGCCGTGTCGTTGAACACGCGCAGCATGGGCACCACGCCG 1377
Query 222248 TTGGATCG-ACCGTTGGTGCCCTTAATGTACG 222278
|| | ||| |||||||||||| |||||||
Sbjct 1378 TT-GCTCGTGCCGTTGGTGCCCCGGATGTACG 1408
Score = 102 bits (112), Expect = 2e-16
Identities = 113/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 221107 CATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGA 221166
|| ||| | ||| ||||| ||| || ||||||||||| | | | ||| | |||
Sbjct 213 CAGGTGGTGGTTGACCACGGTGAACTCGCCCGAGAGCACGCGGCGCACGTAGATGTTGCT 272
Query 221167 AGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCAT 221226
||| | || |||| || |||||||||||||| |||||| ||||| || ||||||||
Sbjct 273 GGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGCTGGTGCTCGCCGTGGGCAT 332
Query 221227 GGGTGCCACCAGCAGACTGTTGCGCAGTCCG 221257
||| ||||||||||| ||||||||| |||
Sbjct 333 GGGCGCCACCAGCAGCGAGTTGCGCAGCCCG 363
>seq2314
Length=1923
Score = 118 bits (130), Expect = 2e-21
Identities = 129/166 (78%), Gaps = 4/166 (2%)
Strand=Plus/Minus
Query 25877 AGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGC 25934
|||| ||| | || ||||| ||| |||||||||||| |||||||| | || |||| |
Sbjct 1833 AGCGCCTGCTGGCGTTTGCGTGC-GTGGAGGGCATCCACTTCAGCGGCGCCTTCTGCG-C 1776
Query 25935 CATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCAT 25994
||||| ||||||||| || || |||||| ||||| ||||||||||||||||||
Sbjct 1775 CATCTACTGGCTCAAAAAGCGCGGCCTCATGCCGGGGCTCACCTTTTCCAACGAGCTCAT 1716
Query 25995 CAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040
|||||||||| || |||| || ||||||||||||||||||
Sbjct 1715 TTCTCGGGACGAGGGCCTGCACACCGACTTTGCCTGCCTGCTCTAC 1670
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928779014567040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |