Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq114 201 1e-46
seq81 156 5e-33
seq60 127 2e-24
seq2314 105 8e-18
>seq114
Length=7431
Score = 201 bits (222), Expect = 1e-46
Identities = 567/861 (66%), Gaps = 11/861 (1%)
Strand=Plus/Minus
Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271
|| ||| ||||| | ||||| || | || ||||||||| ||| ||| | || || |
Sbjct 1688 CCGCAGCACATGCTGATGCGCGTGTCGATGGGCATCCACAAGGAGGACGTGGAGTCGGCG 1629
Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331
| ||||| ||| || | || ||| || ||||| ||||| | || || ||||||
Sbjct 1628 ATCGAGACGTACCACCTGCTGAGCCAGCGTTGGTTCACGCACGCGTCGCCGACGCTCTTC 1569
Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391
|| || || || || | |||||| || ||| ||||| | | |||| |||| |||
Sbjct 1568 AACGCGGGCACCCCCCGCCCGCAGCTGAGCAGCTGCTTTTTGGTGGCCATGAAGGGCGAC 1509
Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451
||| | || ||||| | || || | |||||| ||| ||| ||| | || ||
Sbjct 1508 AGCATCGAGGGCATCTACGACACGCTCAAGGAGTGCGCGGCCATCAGCAAGAGCGCGGGC 1449
Query 75452 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAAT 75511
|| || ||| ||||||| || || | | |||| || || ||||| || ||
Sbjct 1448 GGCATCGGGCTGCACATGCACGACATCCGCGCCACGGGGTCGTACATCCGGGGCACCAAC 1389
Query 75512 GGT-CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 75570
|| | | || | || | | || ||||| ||||| || |||| ||| || || || ||
Sbjct 1388 GGCACGAGCA-ACGGCGTGGTGCCCATGCTGCGCGTGTTCAACGACACGGCTCGGTACGT 1330
Query 75571 AAATCAAG-CGG-GGCGT-CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGC 75627
| || | ||| ||| |||||||| || | ||||| ||| |||| || ||||| ||
Sbjct 1329 GGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCGGTGTACCTGGAGCCCTGGCACGC 1270
Query 75628 CGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAG 75687
|| | ||||| | || || | || ||||| || | || |||||||| |
Sbjct 1269 GGACGTGATGGACTGGCTGGACCTGCGCAAGAACCACGGCAAGGAGGAGGCTCGCGCCCG 1210
Query 75688 AGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGG 75747
|| || || | |||||||| || ||||| || |||||||| || |||| || ||
Sbjct 1209 CGACCTGTTCTACGGGCTGTGGATCCCCGACCTGTTTATGAAGCGCGTCGAGGCGGACGG 1150
Query 75748 TCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGA 75807
|| ||| || ||||| || || |||| || || || | |||| | ||| ||
Sbjct 1149 GCAGTGGAGCCTGTTCTGCCCCAACGAGGCGCCGGGCCTGGCGGACGTGTGGGGCCCCGA 1090
Query 75808 GTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAATGCGACTGTACC 75864
|||||| | |||||| | ||| || ||||| | || ||| ||| || |
Sbjct 1089 GTTTGAGTCGCTCTACGCGCGGTACGAGCGCGAGGGCCGCGCGCGCAAGACGA-TGCGCG 1031
Query 75865 AGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATAT 75924
|| || | ||| || || ||| | | | ||||||||||| || || || || ||
Sbjct 1030 CGCAGCAGCTGT--GGTTCGCCATTTTGGAGGCGCAGACGGAGACGGGCACGCCCTACAT 973
Query 75925 GCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAG 75984
||| |||||||| || || ||| ||||| ||||| |||| |||| || |||||| |
Sbjct 972 GCTGTACAAGGACGCCTGCAACGCCAAGAGCAACCAGCAGAACCTGGGCACGATCAAGTG 913
Query 75985 CTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAA 76044
| || || ||||| || || | |||||||| | || |||||||| || |||||
Sbjct 912 CAGCAACCTGTGCACCGAGATCGTCGAGTACACGGCCCCCGACGAGACGGCCGTGTGCAA 853
Query 76045 TTTGGCATCAATCGCCCTTCC 76065
| || || ||||| || ||
Sbjct 852 CCTCGCCTCGATCGCGCTGCC 832
>seq81
Length=8194
Score = 156 bits (172), Expect = 5e-33
Identities = 304/441 (69%), Gaps = 15/441 (3%)
Strand=Plus/Minus
Query 13553 GGTATTCCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAA-TCTGGAAAGTGTAC 13611
|| ||||||||| | || ||||| ||| | ||||| ||| ||| || |||| ||
Sbjct 1380 GGCATTCCCAAGCTCGACGACGCAAACGACGCGGGCG-GGCGCAACTCCTCCGAGTGCAC 1322
Query 13612 TCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTCGT 13671
||||| |||| ||||| || ||||| || || || || || ||||| || || || ||
Sbjct 1321 CCTCATCCTCACCGAGGGAGACTCGGCCAAGACTCTGGCCGTGGCGGGCCTGTCGGTGGT 1262
Query 13672 TGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAATGTAAGAATGTTCGGGACGC 13731
|| || |||| |||||| |||||||| || ||||| || || || || || ||
Sbjct 1261 GGGCCGCGATCGCTACGGAGTGTTCCCGCTCCGCGGCAAGCTCCTCAACGTGCGAGATGC 1202
Query 13732 TTCGGTGGCACAGCTCACATCAAACCAGGAG-TTCAACGATCTCAAGAAGATCCTTGGTC 13790
||||| ||| ||| || | ||| ||| ||||| | ||||| ||||||| || |
Sbjct 1201 TTCGGCGGCTCAGATCTCGGGCAACGCCGAGATTCAAA-ACATCAAGCAGATCCTGGGCC 1143
Query 13791 TTCAACAAGGAAAAGACTAC--CAAGATGTTTCTGAAC--TTCGCTATGGTCGTCTTATG 13846
| || || || || || ||| ||| | | | || | ||||| || | ||| |||
Sbjct 1142 TGCAGCACGGCAAGGAGTACAACAACAG----CGGCACGCTGCGCTACGGCCATCTCATG 1087
Query 13847 ATTATGACAGATGCCGATAATGATGGTTCTCACATCAAGGGTCTCATCCTAAATATGATC 13906
|| ||||| ||| || | || || || |||||||||||||||||| | || |
Sbjct 1086 ATCATGACGGATCAGGACCACGACGGCTCCCACATCAAGGGTCTCATCATGAACTACCTG 1027
Query 13907 CACTACTTCTGGCCCAGTCTTCTCAAGTT---GGGTTTCGTGGTTTCTATGGTGACACCA 13963
||| ||| | |||||||| |||||| | ||| || |||| | ||||| ||
Sbjct 1026 CACACCTTTTATCCCAGTCTGCTCAAGCTGCCGGGATTTTTGGTGGAGTTTGTGACCCCC 967
Query 13964 ATCATCAAGGCTTCCAAGGGT 13984
|||||||| ||| ||||||||
Sbjct 966 ATCATCAAAGCTACCAAGGGT 946
>seq60
Length=8765
Score = 127 bits (140), Expect = 2e-24
Identities = 304/455 (67%), Gaps = 16/455 (4%)
Strand=Plus/Plus
Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129
||| || |||||||| | ||||||||||| |||||||| || |||||| ||| ||
Sbjct 2593 CTTTGCGGAGCGCCTGGTGGCGTTTGCGTGCGTGGAGGGCATTTTCTTCAGCGGCAGCTT 2652
Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189
|||| | || || ||| | |||||||| ||||||||||| ||||| ||| || || ||
Sbjct 2653 CTGCTCCATCTACTGGGTCAAGAAGCGCGGTCTCATGCCCGGCCTCACCTTTTCCAACGA 2712
Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCT--TCAAGACT 65247
|| || || || |||||||| || ||| || |||||| ||||| || | |
Sbjct 2713 GCTCATCTCTCGTGATGAGGGCCTGCACACCGACTTTGCCTGCCTGCTCTACTCCATGC- 2771
Query 65248 TTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATT 65307
| | | | | | | | | ||| | | || ||||| ||||| || || ||
Sbjct 2772 TCGAGCACCCG-CTCGCCATCGAGCGTCTGAACCAGCTCGTGGGCGAGGCCGTGGAAATC 2830
Query 65308 GAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAG 65367
||||| | ||| ||| || || || || |||||||||| |||||| || |
Sbjct 2831 GAGAAGGAGTTTGTCTGCGATGCCCTGCCGGTGGATCTCATCGGCATGAACGGCAAGCTG 2890
Query 65368 ATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTG----GGGTGCC 65423
||| | |||||||||||| |||| || || || ||| || | ||||||
Sbjct 2891 ATGAGCCAGTACATTGAGTTTGTGAGCGACCGGCTGCTC------GTCGCCCTGGGTGCG 2944
Query 65424 ACCCA--TTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGG 65481
|| | | | ||||| | ||||| || |||| ||||| ||| || | ||
Sbjct 2945 CCCAAGCTCTACAACGCCACCAATCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGC 3004
Query 65482 AAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516
||||||||||| || |||||||| || || |||||
Sbjct 3005 AAGACCAACTTTTTCGAGAAGCGCGTCGGAGACTA 3039
>seq2314
Length=1923
Score = 105 bits (116), Expect = 8e-18
Identities = 121/163 (74%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126
|||||| || ||||||| | ||||||||||| |||||||| ||| |||| ||| |
Sbjct 1844 CTCCTTTGCGCAGCGCCTGCTGGCGTTTGCGTGCGTGGAGGGCATCCACTTCAGCGGCGC 1785
Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186
|||||||| || || ||| | || ||||| || |||||||| || || ||| || ||
Sbjct 1784 CTTCTGCGCCATCTACTGGCTCAAAAAGCGCGGCCTCATGCCGGGGCTCACCTTTTCCAA 1725
Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229
|| || ||||| || || ||||| || ||| || ||||||
Sbjct 1724 CGAGCTCATTTCTCGGGACGAGGGCCTGCACACCGACTTTGCC 1682
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596527347958080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |