Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq114 201 1e-46 seq81 156 5e-33 seq60 127 2e-24 seq2314 105 8e-18 >seq114 Length=7431 Score = 201 bits (222), Expect = 1e-46 Identities = 567/861 (66%), Gaps = 11/861 (1%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| | ||||| || | || ||||||||| ||| ||| | || || | Sbjct 1688 CCGCAGCACATGCTGATGCGCGTGTCGATGGGCATCCACAAGGAGGACGTGGAGTCGGCG 1629 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 | ||||| ||| || | || ||| || ||||| ||||| | || || |||||| Sbjct 1628 ATCGAGACGTACCACCTGCTGAGCCAGCGTTGGTTCACGCACGCGTCGCCGACGCTCTTC 1569 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 || || || || || | |||||| || ||| ||||| | | |||| |||| ||| Sbjct 1568 AACGCGGGCACCCCCCGCCCGCAGCTGAGCAGCTGCTTTTTGGTGGCCATGAAGGGCGAC 1509 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451 ||| | || ||||| | || || | |||||| ||| ||| ||| | || || Sbjct 1508 AGCATCGAGGGCATCTACGACACGCTCAAGGAGTGCGCGGCCATCAGCAAGAGCGCGGGC 1449 Query 75452 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAAT 75511 || || ||| ||||||| || || | | |||| || || ||||| || || Sbjct 1448 GGCATCGGGCTGCACATGCACGACATCCGCGCCACGGGGTCGTACATCCGGGGCACCAAC 1389 Query 75512 GGT-CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 75570 || | | || | || | | || ||||| ||||| || |||| ||| || || || || Sbjct 1388 GGCACGAGCA-ACGGCGTGGTGCCCATGCTGCGCGTGTTCAACGACACGGCTCGGTACGT 1330 Query 75571 AAATCAAG-CGG-GGCGT-CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGC 75627 | || | ||| ||| |||||||| || | ||||| ||| |||| || ||||| || Sbjct 1329 GGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCGGTGTACCTGGAGCCCTGGCACGC 1270 Query 75628 CGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAG 75687 || | ||||| | || || | || ||||| || | || |||||||| | Sbjct 1269 GGACGTGATGGACTGGCTGGACCTGCGCAAGAACCACGGCAAGGAGGAGGCTCGCGCCCG 1210 Query 75688 AGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGG 75747 || || || | |||||||| || ||||| || |||||||| || |||| || || Sbjct 1209 CGACCTGTTCTACGGGCTGTGGATCCCCGACCTGTTTATGAAGCGCGTCGAGGCGGACGG 1150 Query 75748 TCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGA 75807 || ||| || ||||| || || |||| || || || | |||| | ||| || Sbjct 1149 GCAGTGGAGCCTGTTCTGCCCCAACGAGGCGCCGGGCCTGGCGGACGTGTGGGGCCCCGA 1090 Query 75808 GTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAATGCGACTGTACC 75864 |||||| | |||||| | ||| || ||||| | || ||| ||| || | Sbjct 1089 GTTTGAGTCGCTCTACGCGCGGTACGAGCGCGAGGGCCGCGCGCGCAAGACGA-TGCGCG 1031 Query 75865 AGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATAT 75924 || || | ||| || || ||| | | | ||||||||||| || || || || || Sbjct 1030 CGCAGCAGCTGT--GGTTCGCCATTTTGGAGGCGCAGACGGAGACGGGCACGCCCTACAT 973 Query 75925 GCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAG 75984 ||| |||||||| || || ||| ||||| ||||| |||| |||| || |||||| | Sbjct 972 GCTGTACAAGGACGCCTGCAACGCCAAGAGCAACCAGCAGAACCTGGGCACGATCAAGTG 913 Query 75985 CTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAA 76044 | || || ||||| || || | |||||||| | || |||||||| || ||||| Sbjct 912 CAGCAACCTGTGCACCGAGATCGTCGAGTACACGGCCCCCGACGAGACGGCCGTGTGCAA 853 Query 76045 TTTGGCATCAATCGCCCTTCC 76065 | || || ||||| || || Sbjct 852 CCTCGCCTCGATCGCGCTGCC 832 >seq81 Length=8194 Score = 156 bits (172), Expect = 5e-33 Identities = 304/441 (69%), Gaps = 15/441 (3%) Strand=Plus/Minus Query 13553 GGTATTCCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAA-TCTGGAAAGTGTAC 13611 || ||||||||| | || ||||| ||| | ||||| ||| ||| || |||| || Sbjct 1380 GGCATTCCCAAGCTCGACGACGCAAACGACGCGGGCG-GGCGCAACTCCTCCGAGTGCAC 1322 Query 13612 TCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTCGT 13671 ||||| |||| ||||| || ||||| || || || || || ||||| || || || || Sbjct 1321 CCTCATCCTCACCGAGGGAGACTCGGCCAAGACTCTGGCCGTGGCGGGCCTGTCGGTGGT 1262 Query 13672 TGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAATGTAAGAATGTTCGGGACGC 13731 || || |||| |||||| |||||||| || ||||| || || || || || || Sbjct 1261 GGGCCGCGATCGCTACGGAGTGTTCCCGCTCCGCGGCAAGCTCCTCAACGTGCGAGATGC 1202 Query 13732 TTCGGTGGCACAGCTCACATCAAACCAGGAG-TTCAACGATCTCAAGAAGATCCTTGGTC 13790 ||||| ||| ||| || | ||| ||| ||||| | ||||| ||||||| || | Sbjct 1201 TTCGGCGGCTCAGATCTCGGGCAACGCCGAGATTCAAA-ACATCAAGCAGATCCTGGGCC 1143 Query 13791 TTCAACAAGGAAAAGACTAC--CAAGATGTTTCTGAAC--TTCGCTATGGTCGTCTTATG 13846 | || || || || || ||| ||| | | | || | ||||| || | ||| ||| Sbjct 1142 TGCAGCACGGCAAGGAGTACAACAACAG----CGGCACGCTGCGCTACGGCCATCTCATG 1087 Query 13847 ATTATGACAGATGCCGATAATGATGGTTCTCACATCAAGGGTCTCATCCTAAATATGATC 13906 || ||||| ||| || | || || || |||||||||||||||||| | || | Sbjct 1086 ATCATGACGGATCAGGACCACGACGGCTCCCACATCAAGGGTCTCATCATGAACTACCTG 1027 Query 13907 CACTACTTCTGGCCCAGTCTTCTCAAGTT---GGGTTTCGTGGTTTCTATGGTGACACCA 13963 ||| ||| | |||||||| |||||| | ||| || |||| | ||||| || Sbjct 1026 CACACCTTTTATCCCAGTCTGCTCAAGCTGCCGGGATTTTTGGTGGAGTTTGTGACCCCC 967 Query 13964 ATCATCAAGGCTTCCAAGGGT 13984 |||||||| ||| |||||||| Sbjct 966 ATCATCAAAGCTACCAAGGGT 946 >seq60 Length=8765 Score = 127 bits (140), Expect = 2e-24 Identities = 304/455 (67%), Gaps = 16/455 (4%) Strand=Plus/Plus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||| || |||||||| | ||||||||||| |||||||| || |||||| ||| || Sbjct 2593 CTTTGCGGAGCGCCTGGTGGCGTTTGCGTGCGTGGAGGGCATTTTCTTCAGCGGCAGCTT 2652 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||| | || || ||| | |||||||| ||||||||||| ||||| ||| || || || Sbjct 2653 CTGCTCCATCTACTGGGTCAAGAAGCGCGGTCTCATGCCCGGCCTCACCTTTTCCAACGA 2712 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCT--TCAAGACT 65247 || || || || |||||||| || ||| || |||||| ||||| || | | Sbjct 2713 GCTCATCTCTCGTGATGAGGGCCTGCACACCGACTTTGCCTGCCTGCTCTACTCCATGC- 2771 Query 65248 TTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATT 65307 | | | | | | | | | ||| | | || ||||| ||||| || || || Sbjct 2772 TCGAGCACCCG-CTCGCCATCGAGCGTCTGAACCAGCTCGTGGGCGAGGCCGTGGAAATC 2830 Query 65308 GAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAG 65367 ||||| | ||| ||| || || || || |||||||||| |||||| || | Sbjct 2831 GAGAAGGAGTTTGTCTGCGATGCCCTGCCGGTGGATCTCATCGGCATGAACGGCAAGCTG 2890 Query 65368 ATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTG----GGGTGCC 65423 ||| | |||||||||||| |||| || || || ||| || | |||||| Sbjct 2891 ATGAGCCAGTACATTGAGTTTGTGAGCGACCGGCTGCTC------GTCGCCCTGGGTGCG 2944 Query 65424 ACCCA--TTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGG 65481 || | | | ||||| | ||||| || |||| ||||| ||| || | || Sbjct 2945 CCCAAGCTCTACAACGCCACCAATCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGC 3004 Query 65482 AAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 ||||||||||| || |||||||| || || ||||| Sbjct 3005 AAGACCAACTTTTTCGAGAAGCGCGTCGGAGACTA 3039 >seq2314 Length=1923 Score = 105 bits (116), Expect = 8e-18 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 |||||| || ||||||| | ||||||||||| |||||||| ||| |||| ||| | Sbjct 1844 CTCCTTTGCGCAGCGCCTGCTGGCGTTTGCGTGCGTGGAGGGCATCCACTTCAGCGGCGC 1785 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 |||||||| || || ||| | || ||||| || |||||||| || || ||| || || Sbjct 1784 CTTCTGCGCCATCTACTGGCTCAAAAAGCGCGGCCTCATGCCGGGGCTCACCTTTTCCAA 1725 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || || ||||| || || ||||| || ||| || |||||| Sbjct 1724 CGAGCTCATTTCTCGGGACGAGGGCCTGCACACCGACTTTGCC 1682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596527347958080