Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq1180 334 1e-86 seq2724 170 3e-37 seq3257 154 2e-32 seq81 116 5e-21 seq55 102 1e-16 >seq1180 Length=3129 Score = 334 bits (370), Expect = 1e-86 Identities = 993/1523 (65%), Gaps = 24/1523 (2%) Strand=Plus/Plus Query 195373 GAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCT 195432 ||| || || || ||||| || || || |||||||| ||||| || || | || || || Sbjct 1299 GAACGAGCAGGGCAACCGCACGACGCCCTCGTACGTGGCCTTCACGGACACGGAGCGCCT 1358 Query 195433 CGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGC 195492 | || || ||||| || || ||| || |||||||| ||||| || || || ||||| Sbjct 1359 GATCGGCGACGCCGCCAAGAACCAGGTGGCGATGAACCCCATCAACACCGTGTTCGACGC 1418 Query 195493 GAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAGGACTG 195552 ||||| || || || |||||||| || || || ||||| | |||| Sbjct 1419 CAAGCGCCTCATCGGCCGCAAGTTCAGCGAGCCCGCGGTGCAGGACGACCTGCGCCACTG 1478 Query 195553 GTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGAATTTCACGG 195612 | | | | || || |||| ||| || ||||| ||||| | || || | | || Sbjct 1479 GCCCTTCAAGGTCGTGTCCGGGTCGGCCGAGAAGCCCATGATCGAGGTGGACTACAAGGG 1538 Query 195613 TGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGA 195672 |||||||| || ||||| |||| || ||||| || |||||| || | ||||||||||| Sbjct 1539 CGAGAAGAAGCAGTTTGCGGCCGAGGAGATTTCCTCCATGGTGCTGGTGAAGATGAAGGA 1598 Query 195673 GACTGCGGAATCTTTCATGGGT------AAAACTGTGAAAGATGCAGTTGTGACTGTACC 195726 || |||| | | || ||||| || ||||| | || || || || || || Sbjct 1599 GATTGCGCAGGCGTTTGTGGGTGCCGACAAGGAGGTGAAGAAGGCGGTGGTCACCGTGCC 1658 Query 195727 TGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCT 195786 || ||||||| || || || || ||||| || |||||||| | | || || || || Sbjct 1659 CGCCTACTTCAACGACTCCCAGCGCCAGGCCACCAAGGACGCCGGCGTGATCGCCGGCCT 1718 Query 195787 AAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAA 195846 || | | || ||||| || || || || || || || || || || |||||||| Sbjct 1719 CGACGTGATGCGCATCATCAACGAGCCCACCGCCGCGGCCATCGCCTACGGCCTGGACAA 1778 Query 195847 GAACAAGG------ACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTT 195900 ||| || | || || | || || | ||||| ||||| || || || || || Sbjct 1779 GAAGAACGTCACCACCGGCGAGCAGAACGTGCTCATCTTCGATCTGGGCGGCGGCACCTT 1838 Query 195901 TGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGA 195960 |||||| || || || | || || | || || ||||| || ||| | || || || || Sbjct 1839 TGATGTGTCCCTGCTGACCATCGAGGAGGGCATCTTCGAGGTCAAGTCCACCGCCGGAGA 1898 Query 195961 TACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTGATGAGT 196019 || || || || || || || || || || || | || ||||| | |||| Sbjct 1899 CACCCACCTGGGCGGCGAGGACTTTGACAACCGCCTGGTGAACCACTTTGT-GCAAGAGT 1957 Query 196020 TCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGA 196079 || | ||||| |||| || | || || || | || || || || ||| | | Sbjct 1958 TCAAGAGGAAGAACAAGAGTGACCTCAGCGGCAACCCCCGCGCCCTGCGCCGCCTTCGCA 2017 Query 196080 CTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATTG 196139 | || || || || || || || || || || || | | || | | | ||||| | Sbjct 2018 CCGCGTGCGAGCGCGCGAAGCGCACGCTGTCCTCCTCCACCCAGGCCTCGCTCGAGATCG 2077 Query 196140 ATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGT 196199 | ||| |||| || || || |||||||| | | | ||||| || || || || ||| Sbjct 2078 ACTCGCTGTTCGAGGGCATCGACTTCTACTCGTCCCTCACCCGCGCTCGCTTCGAGGAGC 2137 Query 196200 TAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAA 196259 | ||| || |||| | ||||| ||||| || || || | || | || ||||| | Sbjct 2138 TCAACATGGACCTGTTCCGCAAGTGCATGGACCCCGTGGAGAAGGTCATCCGCGACGCCA 2197 Query 196260 AGATGGATAAGTCTAAGG---TTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTC 196316 ||||||| ||| |||| | | || | ||||| || || || || |||||||||| Sbjct 2198 AGATGGACAAG---AAGGCCATCCACGAGGTGGTCCTCGTCGGCGGTTCCACCCGTATTC 2254 Query 196317 CGAAGATTCAACAGATGCTTTCTAGCTT-CTTCAATAATAAAGATTTAAACAAAACGATC 196375 | ||| | || ||| | | | || |||||| || || | ||| | ||| Sbjct 2255 CCAAGGTGCAGACCCTGC-TCCAGGATTACTTCAACGGCAAGGAGCTGTGCAAGAGCATC 2313 Query 196376 AACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTT 196435 ||||| || || || || || || || || ||||| ||||| || || ||| || | Sbjct 2314 AACCCCGACGAGGCCGTGGCCTACGGCGCCGCCGTGCAGGCCGCCATCCTCAACGGCG-A 2372 Query 196436 GAC-AATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCT 196494 ||| | | || || || || || ||||| || || || ||| | || ||||| || Sbjct 2373 GACGCACGAGAAGGTGCAGGACCTCCTGCTGCTCGACGTCATCCCCCTCTCGCTGGGCCT 2432 Query 196495 TGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAA 196554 || || || || || || ||||| | || | ||||| || || || || || Sbjct 2433 CGAGACGGCCGGCGGCGTGATGACGGTGCTCATCTCGCGCAACACGACCATCCCCACGAA 2492 Query 196555 GAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATA 196614 |||||| || || || || || || || || || || || || | || || || | Sbjct 2493 GAAGGAGCAGGTGTTCAGCACCTACTCGGACAACCAGCCCGGCGTGCTGATCCAGGTGTT 2552 Query 196615 TGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGGG 196674 || || || ||||| || | ||||| ||| | || || || | || || |||| || Sbjct 2553 CGAGGGCGAGCGCTCTCGCACCAAGGACAACAACCTCCTGGGCAAGTTTGAGCTGACCGG 2612 Query 196675 GATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAA 196734 || || | || ||| | || || || ||||| | || |||||| | ||||| || Sbjct 2613 CATCCCCCCCGCGCCCCGCGGCGTGCCCCAGATCACGGTCACCTTCGACGTGGACGCCAA 2672 Query 196735 TGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGAT 196794 || || || |||||| | || ||||||||| | | ||||| | || || || Sbjct 2673 CGGCATCCTCAACGTCGCCGCCGAGGACAAGACCACGGGCAAGAAGAACAACATCACCAT 2732 Query 196795 TACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGA 196854 ||||| |||||||| || || || |||||||| || || || ||||| || || || || Sbjct 2733 CACCAACGACAAGGGCCGCCTGTCCAAGGAGGAGATCGAGCGCATGGTGCAGGAGGCCGA 2792 Query 196855 AAAGTACAGGGAAGAAGACGAGG 196877 |||| ||| || ||||||| Sbjct 2793 GCGCTACAAGGACGAGGACGAGG 2815 >seq2724 Length=1646 Score = 170 bits (188), Expect = 3e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || || || || || || || |||||||||||||| ||||| || Sbjct 1535 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCG 1476 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| |||| |||||||| || || ||||| |||||||| ||||| ||| Sbjct 1475 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAG 1416 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||| || || || ||||| || ||||| || || || | || |||||| Sbjct 1415 CAGCGCCTGATTTTCGCGGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAAC 1356 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || ||||||||||| || || || || || Sbjct 1355 ATCCAGAAGGAGTCTACCCTTCATCTGGTCCT 1324 >seq3257 Length=1341 Score = 154 bits (170), Expect = 2e-32 Identities = 145/185 (78%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 171889 GGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAG 171948 || || || |||||||||||||| ||||| || ||||| || || ||| |||| |||||| Sbjct 185 GGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACTATTGAAAACGTCAAGGCCAAG 126 Query 171949 ATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAG 172008 || || || ||||| |||||||| ||||| ||||| || || ||||| || || || ||| Sbjct 125 ATCCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGCCTGATTTTCGCGGGCAAGCAG 66 Query 172009 CTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTT 172068 || || ||||| || || || | || |||||| | || ||||||||||| || ||||| Sbjct 65 CTGGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCTACCCTTCACCTG 6 Query 172069 GTTCT 172073 || || Sbjct 5 GTCCT 1 >seq81 Length=8194 Score = 116 bits (128), Expect = 5e-21 Identities = 231/337 (69%), Gaps = 4/337 (1%) Strand=Plus/Plus Query 182763 CCCTTAATATGCGAACCATCGTTATCAGCATCAGTCATAATCATGAGACGACCATACCGA 182822 ||||| || || || || |||| || ||| ||||| ||||||||| | || || || Sbjct 1046 CCCTTGATGTGGGAGCCGTCGTGGTCCTGATCCGTCATGATCATGAGATGGCCGTAGCGC 1105 Query 182823 AGCTCGGATACATCTTTGTATTCTTTTCCTTGTTGGAGACCCAATATTTTCTTTAGGTCG 182882 ||| | | ||||| || || || || || || |||| || | ||| | || Sbjct 1106 AGCGTGCCGCTGTTGTTGTACTCCTTGCCGTGCTGCAGGCCCAGGATCTGCTTGATGTT- 1164 Query 182883 TTGAA-CTCTTGATTTCCAGTCAACTGGGCCACAGATGCATCTCGGACATTCTTACACTT 182941 ||||| ||| || || | | ||| ||| | || |||||||| || || ||| Sbjct 1165 TTGAATCTCGGCGTTGCCCGAGATCTGAGCCGCCGAAGCATCTCGCACGTTGAGGAGCTT 1224 Query 182942 TCCCCGAAGTGGAAAGACGCCGTAATGATCCCTTCCAACAACAGAGAGGCCAGCGACAGC 183001 || || || || || || ||||| |||| | || || || || ||||| || || || Sbjct 1225 GCCGCGGAGCGGGAACACTCCGTAGCGATCGCGGCCCACCACCGACAGGCCCGCCACGGC 1284 Query 183002 GAGTGTCTTTGCCGAGTCACCCTCTGTCACGATGAGTGTACACTTAGAAGA-TTGGGCTG 183060 || ||||| |||||||| ||||| || | |||||| || |||| || || ||| || Sbjct 1285 CAGAGTCTTGGCCGAGTCTCCCTCGGTGAGGATGAGGGTGCACTCGGAGGAGTTGCGCCC 1344 Query 183061 TCCCAGCTTTGTTTGCGTCATCAAGCTTGGGAATACC 183097 ||| || | ||||||||| || ||||||||||| || Sbjct 1345 GCCC-GCGTCGTTTGCGTCGTCGAGCTTGGGAATGCC 1380 >seq55 Length=8980 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 171938 TCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTG 171997 |||| ||||||||||| || ||||| ||||| || || || ||||| || || || || | Sbjct 4162 TCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTGATCTTCG 4103 Query 171998 CTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTA 172057 | || || ||||| || || || || ||||| || || |||||| | || |||||||| | Sbjct 4102 CCGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCA 4043 Query 172058 CTCTACACCTTGTTCT 172073 | || ||||| || || Sbjct 4042 CCCTCCACCTGGTCCT 4027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657815806895520