Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq1180 334 1e-86
seq2724 170 3e-37
seq3257 154 2e-32
seq81 116 5e-21
seq55 102 1e-16
>seq1180
Length=3129
Score = 334 bits (370), Expect = 1e-86
Identities = 993/1523 (65%), Gaps = 24/1523 (2%)
Strand=Plus/Plus
Query 195373 GAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCT 195432
||| || || || ||||| || || || |||||||| ||||| || || | || || ||
Sbjct 1299 GAACGAGCAGGGCAACCGCACGACGCCCTCGTACGTGGCCTTCACGGACACGGAGCGCCT 1358
Query 195433 CGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGC 195492
| || || ||||| || || ||| || |||||||| ||||| || || || |||||
Sbjct 1359 GATCGGCGACGCCGCCAAGAACCAGGTGGCGATGAACCCCATCAACACCGTGTTCGACGC 1418
Query 195493 GAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAGGACTG 195552
||||| || || || |||||||| || || || ||||| | ||||
Sbjct 1419 CAAGCGCCTCATCGGCCGCAAGTTCAGCGAGCCCGCGGTGCAGGACGACCTGCGCCACTG 1478
Query 195553 GTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGAATTTCACGG 195612
| | | | || || |||| ||| || ||||| ||||| | || || | | ||
Sbjct 1479 GCCCTTCAAGGTCGTGTCCGGGTCGGCCGAGAAGCCCATGATCGAGGTGGACTACAAGGG 1538
Query 195613 TGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGA 195672
|||||||| || ||||| |||| || ||||| || |||||| || | |||||||||||
Sbjct 1539 CGAGAAGAAGCAGTTTGCGGCCGAGGAGATTTCCTCCATGGTGCTGGTGAAGATGAAGGA 1598
Query 195673 GACTGCGGAATCTTTCATGGGT------AAAACTGTGAAAGATGCAGTTGTGACTGTACC 195726
|| |||| | | || ||||| || ||||| | || || || || || ||
Sbjct 1599 GATTGCGCAGGCGTTTGTGGGTGCCGACAAGGAGGTGAAGAAGGCGGTGGTCACCGTGCC 1658
Query 195727 TGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCT 195786
|| ||||||| || || || || ||||| || |||||||| | | || || || ||
Sbjct 1659 CGCCTACTTCAACGACTCCCAGCGCCAGGCCACCAAGGACGCCGGCGTGATCGCCGGCCT 1718
Query 195787 AAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAA 195846
|| | | || ||||| || || || || || || || || || || ||||||||
Sbjct 1719 CGACGTGATGCGCATCATCAACGAGCCCACCGCCGCGGCCATCGCCTACGGCCTGGACAA 1778
Query 195847 GAACAAGG------ACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTT 195900
||| || | || || | || || | ||||| ||||| || || || || ||
Sbjct 1779 GAAGAACGTCACCACCGGCGAGCAGAACGTGCTCATCTTCGATCTGGGCGGCGGCACCTT 1838
Query 195901 TGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGA 195960
|||||| || || || | || || | || || ||||| || ||| | || || || ||
Sbjct 1839 TGATGTGTCCCTGCTGACCATCGAGGAGGGCATCTTCGAGGTCAAGTCCACCGCCGGAGA 1898
Query 195961 TACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTGATGAGT 196019
|| || || || || || || || || || || | || ||||| | ||||
Sbjct 1899 CACCCACCTGGGCGGCGAGGACTTTGACAACCGCCTGGTGAACCACTTTGT-GCAAGAGT 1957
Query 196020 TCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGA 196079
|| | ||||| |||| || | || || || | || || || || ||| | |
Sbjct 1958 TCAAGAGGAAGAACAAGAGTGACCTCAGCGGCAACCCCCGCGCCCTGCGCCGCCTTCGCA 2017
Query 196080 CTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATTG 196139
| || || || || || || || || || || || | | || | | | ||||| |
Sbjct 2018 CCGCGTGCGAGCGCGCGAAGCGCACGCTGTCCTCCTCCACCCAGGCCTCGCTCGAGATCG 2077
Query 196140 ATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGT 196199
| ||| |||| || || || |||||||| | | | ||||| || || || || |||
Sbjct 2078 ACTCGCTGTTCGAGGGCATCGACTTCTACTCGTCCCTCACCCGCGCTCGCTTCGAGGAGC 2137
Query 196200 TAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAA 196259
| ||| || |||| | ||||| ||||| || || || | || | || ||||| |
Sbjct 2138 TCAACATGGACCTGTTCCGCAAGTGCATGGACCCCGTGGAGAAGGTCATCCGCGACGCCA 2197
Query 196260 AGATGGATAAGTCTAAGG---TTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTC 196316
||||||| ||| |||| | | || | ||||| || || || || ||||||||||
Sbjct 2198 AGATGGACAAG---AAGGCCATCCACGAGGTGGTCCTCGTCGGCGGTTCCACCCGTATTC 2254
Query 196317 CGAAGATTCAACAGATGCTTTCTAGCTT-CTTCAATAATAAAGATTTAAACAAAACGATC 196375
| ||| | || ||| | | | || |||||| || || | ||| | |||
Sbjct 2255 CCAAGGTGCAGACCCTGC-TCCAGGATTACTTCAACGGCAAGGAGCTGTGCAAGAGCATC 2313
Query 196376 AACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTT 196435
||||| || || || || || || || || ||||| ||||| || || ||| || |
Sbjct 2314 AACCCCGACGAGGCCGTGGCCTACGGCGCCGCCGTGCAGGCCGCCATCCTCAACGGCG-A 2372
Query 196436 GAC-AATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCT 196494
||| | | || || || || || ||||| || || || ||| | || ||||| ||
Sbjct 2373 GACGCACGAGAAGGTGCAGGACCTCCTGCTGCTCGACGTCATCCCCCTCTCGCTGGGCCT 2432
Query 196495 TGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAA 196554
|| || || || || || ||||| | || | ||||| || || || || ||
Sbjct 2433 CGAGACGGCCGGCGGCGTGATGACGGTGCTCATCTCGCGCAACACGACCATCCCCACGAA 2492
Query 196555 GAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATA 196614
|||||| || || || || || || || || || || || || | || || || |
Sbjct 2493 GAAGGAGCAGGTGTTCAGCACCTACTCGGACAACCAGCCCGGCGTGCTGATCCAGGTGTT 2552
Query 196615 TGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGGG 196674
|| || || ||||| || | ||||| ||| | || || || | || || |||| ||
Sbjct 2553 CGAGGGCGAGCGCTCTCGCACCAAGGACAACAACCTCCTGGGCAAGTTTGAGCTGACCGG 2612
Query 196675 GATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAA 196734
|| || | || ||| | || || || ||||| | || |||||| | ||||| ||
Sbjct 2613 CATCCCCCCCGCGCCCCGCGGCGTGCCCCAGATCACGGTCACCTTCGACGTGGACGCCAA 2672
Query 196735 TGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGAT 196794
|| || || |||||| | || ||||||||| | | ||||| | || || ||
Sbjct 2673 CGGCATCCTCAACGTCGCCGCCGAGGACAAGACCACGGGCAAGAAGAACAACATCACCAT 2732
Query 196795 TACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGA 196854
||||| |||||||| || || || |||||||| || || || ||||| || || || ||
Sbjct 2733 CACCAACGACAAGGGCCGCCTGTCCAAGGAGGAGATCGAGCGCATGGTGCAGGAGGCCGA 2792
Query 196855 AAAGTACAGGGAAGAAGACGAGG 196877
|||| ||| || |||||||
Sbjct 2793 GCGCTACAAGGACGAGGACGAGG 2815
>seq2724
Length=1646
Score = 170 bits (188), Expect = 3e-37
Identities = 165/212 (78%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| || || || || || || || || |||||||||||||| ||||| ||
Sbjct 1535 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCG 1476
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| ||| |||| |||||||| || || ||||| |||||||| ||||| |||
Sbjct 1475 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAG 1416
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| || || ||||| || || || ||||| || ||||| || || || | || ||||||
Sbjct 1415 CAGCGCCTGATTTTCGCGGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAAC 1356
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073
| || ||||||||||| || || || || ||
Sbjct 1355 ATCCAGAAGGAGTCTACCCTTCATCTGGTCCT 1324
>seq3257
Length=1341
Score = 154 bits (170), Expect = 2e-32
Identities = 145/185 (78%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 171889 GGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAG 171948
|| || || |||||||||||||| ||||| || ||||| || || ||| |||| ||||||
Sbjct 185 GGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACTATTGAAAACGTCAAGGCCAAG 126
Query 171949 ATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAG 172008
|| || || ||||| |||||||| ||||| ||||| || || ||||| || || || |||
Sbjct 125 ATCCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGCCTGATTTTCGCGGGCAAGCAG 66
Query 172009 CTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTT 172068
|| || ||||| || || || | || |||||| | || ||||||||||| || |||||
Sbjct 65 CTGGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCTACCCTTCACCTG 6
Query 172069 GTTCT 172073
|| ||
Sbjct 5 GTCCT 1
>seq81
Length=8194
Score = 116 bits (128), Expect = 5e-21
Identities = 231/337 (69%), Gaps = 4/337 (1%)
Strand=Plus/Plus
Query 182763 CCCTTAATATGCGAACCATCGTTATCAGCATCAGTCATAATCATGAGACGACCATACCGA 182822
||||| || || || || |||| || ||| ||||| ||||||||| | || || ||
Sbjct 1046 CCCTTGATGTGGGAGCCGTCGTGGTCCTGATCCGTCATGATCATGAGATGGCCGTAGCGC 1105
Query 182823 AGCTCGGATACATCTTTGTATTCTTTTCCTTGTTGGAGACCCAATATTTTCTTTAGGTCG 182882
||| | | ||||| || || || || || || |||| || | ||| | ||
Sbjct 1106 AGCGTGCCGCTGTTGTTGTACTCCTTGCCGTGCTGCAGGCCCAGGATCTGCTTGATGTT- 1164
Query 182883 TTGAA-CTCTTGATTTCCAGTCAACTGGGCCACAGATGCATCTCGGACATTCTTACACTT 182941
||||| ||| || || | | ||| ||| | || |||||||| || || |||
Sbjct 1165 TTGAATCTCGGCGTTGCCCGAGATCTGAGCCGCCGAAGCATCTCGCACGTTGAGGAGCTT 1224
Query 182942 TCCCCGAAGTGGAAAGACGCCGTAATGATCCCTTCCAACAACAGAGAGGCCAGCGACAGC 183001
|| || || || || || ||||| |||| | || || || || ||||| || || ||
Sbjct 1225 GCCGCGGAGCGGGAACACTCCGTAGCGATCGCGGCCCACCACCGACAGGCCCGCCACGGC 1284
Query 183002 GAGTGTCTTTGCCGAGTCACCCTCTGTCACGATGAGTGTACACTTAGAAGA-TTGGGCTG 183060
|| ||||| |||||||| ||||| || | |||||| || |||| || || ||| ||
Sbjct 1285 CAGAGTCTTGGCCGAGTCTCCCTCGGTGAGGATGAGGGTGCACTCGGAGGAGTTGCGCCC 1344
Query 183061 TCCCAGCTTTGTTTGCGTCATCAAGCTTGGGAATACC 183097
||| || | ||||||||| || ||||||||||| ||
Sbjct 1345 GCCC-GCGTCGTTTGCGTCGTCGAGCTTGGGAATGCC 1380
>seq55
Length=8980
Score = 102 bits (112), Expect = 1e-16
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 171938 TCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTG 171997
|||| ||||||||||| || ||||| ||||| || || || ||||| || || || || |
Sbjct 4162 TCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTGATCTTCG 4103
Query 171998 CTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTA 172057
| || || ||||| || || || || ||||| || || |||||| | || |||||||| |
Sbjct 4102 CCGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCA 4043
Query 172058 CTCTACACCTTGTTCT 172073
| || ||||| || ||
Sbjct 4042 CCCTCCACCTGGTCCT 4027
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657815806895520
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