Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2188 93.3 1e-13 >seq2188 Length=2021 Score = 93.3 bits (102), Expect = 1e-13 Identities = 257/390 (66%), Gaps = 8/390 (2%) Strand=Plus/Plus Query 302491 TCAATTCCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTGTTATTTCTTACGGTC 302550 || || ||||| ||||||||| |||| | ||| | | | || || | ||||| Sbjct 52 TCCATGCCGTCCTCGCCGTAGAGGAACTGCACGATCTCGCCCATGGCGTTGCGCACGGTG 111 Query 302551 ATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCA 302610 || || | | ||| | ||| ||||| ||||| | || ||||| || || || Sbjct 112 CCGTCGTAGCGCACCATGAGGTCCTCCATGGCCTTGACCAGGCGGCGCTGGATGTAGCCG 171 Query 302611 GTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAG 302670 || | | || || || || || || || || || | || || ||||| || |||||| Sbjct 172 GTGCTGGCCGTCTTCACCGCCGTGTCGATGAGCCCCTCGCGGCCGCCCATGGCGTGGAAG 231 Query 302671 AATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCG 302730 || | ||| | || ||||| | | ||||| | || ||||| || || |||| Sbjct 232 AAAAACTCCTGGGGGGACAGCCCGCGCAGGTAGGAGTTTTCCACGAACCCGCGGCTCTCG 291 Query 302731 GGC--GAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGA 302788 ||| ||| |||| |||| | ||||| ||||| || | | | | | ||| | || | Sbjct 292 GGCCCGAA--GTCGTCCTTGCTGAAGTGCGGCAGCGTGCGCTGCGCGAACCCGAAGGGAA 349 Query 302789 TACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT--TAA 302846 | ||||| || || ||||||||||| || | ||| | |||||||| || || || | | Sbjct 350 TGCGCTTGCCCTCGACGTTCTGCTGGCCGACGCAGGCGATCATCTGGGAGATGTTGATGA 409 Query 302847 ATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 | | ||||||||||| || | ||||| Sbjct 410 AGGA--TCCCTTGGAGCCGGCGTGCACCAT 437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471710752481442