Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq2188 93.3 1e-13
>seq2188
Length=2021
Score = 93.3 bits (102), Expect = 1e-13
Identities = 257/390 (66%), Gaps = 8/390 (2%)
Strand=Plus/Plus
Query 302491 TCAATTCCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTGTTATTTCTTACGGTC 302550
|| || ||||| ||||||||| |||| | ||| | | | || || | |||||
Sbjct 52 TCCATGCCGTCCTCGCCGTAGAGGAACTGCACGATCTCGCCCATGGCGTTGCGCACGGTG 111
Query 302551 ATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCA 302610
|| || | | ||| | ||| ||||| ||||| | || ||||| || || ||
Sbjct 112 CCGTCGTAGCGCACCATGAGGTCCTCCATGGCCTTGACCAGGCGGCGCTGGATGTAGCCG 171
Query 302611 GTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAG 302670
|| | | || || || || || || || || || | || || ||||| || ||||||
Sbjct 172 GTGCTGGCCGTCTTCACCGCCGTGTCGATGAGCCCCTCGCGGCCGCCCATGGCGTGGAAG 231
Query 302671 AATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCG 302730
|| | ||| | || ||||| | | ||||| | || ||||| || || ||||
Sbjct 232 AAAAACTCCTGGGGGGACAGCCCGCGCAGGTAGGAGTTTTCCACGAACCCGCGGCTCTCG 291
Query 302731 GGC--GAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGA 302788
||| ||| |||| |||| | ||||| ||||| || | | | | | ||| | || |
Sbjct 292 GGCCCGAA--GTCGTCCTTGCTGAAGTGCGGCAGCGTGCGCTGCGCGAACCCGAAGGGAA 349
Query 302789 TACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT--TAA 302846
| ||||| || || ||||||||||| || | ||| | |||||||| || || || | |
Sbjct 350 TGCGCTTGCCCTCGACGTTCTGCTGGCCGACGCAGGCGATCATCTGGGAGATGTTGATGA 409
Query 302847 ATCACTGCCCTTGGAGCCAGCATTTACCAT 302876
| | ||||||||||| || | |||||
Sbjct 410 AGGA--TCCCTTGGAGCCGGCGTGCACCAT 437
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471710752481442
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |