Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2724 127 1e-24 seq55 107 1e-18 seq3257 104 2e-17 >seq2724 Length=1646 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 |||||||| |||| ||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 1324 AGGACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 1383 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || ||||| ||||| || |||||||| | || | ||||||||||| Sbjct 1384 TCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC 1443 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||| || || | ||| |||||| Sbjct 1444 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTC 1503 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || ||||| || ||||| || |||||||||||| Sbjct 1504 TTGCCCGTCAGCGTCTTGACGAAGATCTGCATG 1536 Score = 86.0 bits (94), Expect = 4e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||||| ||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 1552 AGGACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCT 1611 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTG 34860 ||||| ||||| || ||||| ||||| || ||||| Sbjct 1612 TCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTG 1646 >seq55 Length=8980 Score = 107 bits (118), Expect = 1e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | |||| ||||||||| ||||| ||||| | ||| |||| | || Sbjct 4027 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCC 4086 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| |||||||||||||| || |||||||| | || | ||||||||||| Sbjct 4087 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 4145 >seq3257 Length=1341 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||||| ||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 1 AGGACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 60 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || ||||| ||||| || |||||||| | || | ||||||||||| Sbjct 61 TCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC 120 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | | || | || | ||| || || | ||| |||||| Sbjct 121 TGGATCTTGGCCTTGACGTTTTCAATAGTGTCCGAAGACTCCACCTCGAGGGTGATGGTC 180 Query 34946 TTTCC 34950 || || Sbjct 181 TTGCC 185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325670309487254