Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_022988.1 Length=74210 Score E Sequences producing significant alignments: (Bits) Value seq152 129 3e-25 >seq152 Length=7042 Score = 129 bits (142), Expect = 3e-25 Identities = 256/376 (68%), Gaps = 5/376 (1%) Strand=Plus/Plus Query 64698 CTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTGGTGGAAATCTACGGC 64757 ||||| | |||||||| || || ||||| |||||| | ||||| ||||||||| Sbjct 4515 CTGGATGCGGCTCTGGGG---GGCGGCTACCCCGTGGGCCGCATCGTGGAGATCTACGGC 4571 Query 64758 CCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGGCCAATGCGCAGAAGGCC 64817 || || || |||||| | || ||| || ||||| ||||| | | ||||| | Sbjct 4572 CCCGAGTCGAGCGGGAAGACGACGCTGGCGCTGCACGCCATGGCCGAGGTGCAGAGACGC 4631 Query 64818 GGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCG 64877 || ||||| || | |||||||| |||||| | | ||||| | | || | | || Sbjct 4632 GGAGGCAAGTGCGTTTTGATCGACGCCGAGCACGCGTTCGACCCGGTATTCG-CGCGTCG 4690 Query 64878 CTCGGTG-TGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCT 64936 | ||| | ||||| | ||| ||| || ||||| ||| |||||| ||| || Sbjct 4691 CGCGGGGCTGGACGTGGACGCGCTCTACCTGAGCCAGCCCGACTGCGGCGAGGCGGCGCT 4750 Query 64937 GGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGT 64996 |||||||| ||| ||| || || || | || ||| |||| ||| ||||| || Sbjct 4751 GGAGATCGCGGACAACCTGATCCGCTCCGGGGGCGTGGACATGGTCGCCGTCGACTCGGT 4810 Query 64997 GGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCT 65056 |||||| ||||| ||||| |||||| | || ||||| |||||| | || || ||| Sbjct 4811 GGCGGCGCTGGTCCCGCGAGCCGAGATAGAGGGCGAGATCGGGCAGCTGCAGGTGGGCGC 4870 Query 65057 GCACGCGCGCCTCATG 65072 || |||||||| ||| Sbjct 4871 CCAGGCGCGCCTGATG 4886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 237330810137446