Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq114 398 7e-106 seq60 206 3e-48 seq2724 158 1e-33 seq2314 152 5e-32 seq3257 127 2e-24 seq55 95.1 1e-14 >seq114 Length=7431 Score = 398 bits (440), Expect = 7e-106 Identities = 619/874 (71%), Gaps = 17/874 (2%) Strand=Plus/Plus Query 148821 GCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCG 148880 ||||| ||||| || ||||||||||||||||| || ||||| ||||||| ||||||||| Sbjct 838 GCGATCGAGGCGAGGTTGCACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACGATCTCG 897 Query 148881 GCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCAC 148940 | |||||| |||||||| |||||| ||||| ||||| || ||||||||| |||||| Sbjct 898 GTGCACAGGTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCGTTGCAG 957 Query 148941 GCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG---AAC 148997 |||||||||||||||||||| || ||| || ||| ||||| |||| ||| ||| Sbjct 958 GCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGCCTCCAAAATGGCGAAC 1017 Query 148998 CGATGCAGGTCCTGCGCGCGCA-CTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGT 149056 | ||| | ||||||||||| | | ||| || ||| ||||| ||||||| | Sbjct 1018 CA---CAGCTGCTGCGCGCGCATCGTCTTGCGCGC-GCGGCCCTCGCGCTCGTACCGCGC 1073 Query 149057 ATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCA 149116 || ||| ||| ||| | ||| | || | || || || || || ||||| Sbjct 1074 GTAGAGCGACTCAAACTCGGGGCCCCACACGTCCGCCAGGCCCGGCGCCTCGTTGGGGCA 1133 Query 149117 CATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAG 149176 | || |||| |||||||| | ||||||||||||||||| ||||| | ||| || Sbjct 1134 GAACAGGCTCCACTGCCCGTCCGCCTCGACGCGCTTCATAAACAGGTCGGGGATCCACAG 1193 Query 149177 CGCGTACATGAGGTCGCGCGC-CTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGA 149235 | |||| | |||||||| || | || || || ||| ||| |||||||| | Sbjct 1194 CCCGTAGAACAGGTCGCGGGCGCGAGCC-TCCTCCTTGCCGTGGTTCTTGCGCAGGTCCA 1252 Query 149236 GCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCT 149295 || | | | |||||||||||| ||||| | ||||||||| | ||||||||||||| Sbjct 1253 GCCAGTCCATCACGTCCGCGTGCCAGGGCTCCAGGTACACCGCAAAGGCGCCCTTGCGCT 1312 Query 149296 TGCCGCC---CTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAA 149352 ||||||| |||||| |||| || || ||| ||| ||||| || | ||| || | | Sbjct 1313 TGCCGCCGCCCTGGTCCACGTACCGAGCCGTGTCGTTGAACACGCGCAGCATGGGCACCA 1372 Query 149353 TGCCACTGGCAGTGCCGTTAGTAGAGCTAATG--CGACTGCCGCGCGCTCGCACTTTGTG 149410 ||| || |||||||| || | ||| |||| ||| | || || | | ||| Sbjct 1373 CGCCGTTGCTCGTGCCGTTGGTGCCCCGGATGTACGACC-CCGTG-GCGCGGATGTCGTG 1430 Query 149411 CACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGA 149470 || || | ||||||||||| || ||| |||||||||||| || |||||| Sbjct 1431 CATGTGCAGCCCGATGCCGCCCGCGCTCTTGCTGATGGCCGCGCACTCCTTGAGCGTGTC 1490 Query 149471 GTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGG 149530 ||||||||||||||||||||||| |||||||| || || |||||| || || ||||| Sbjct 1491 GTAGATGCCCTCGATGCTGTCGCCCTTCATGGCCACCAAAAAGCAGCTGCTCAGCTGCGG 1550 Query 149531 AAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCAT 149590 | ||||| || ||| | || || ||||| || || | |||||||| Sbjct 1551 GCGGGGGGTGCCCGCGTTGAAGAGCGTCGGCGACGCGTGCGTGAACCAACGCTGGCTCAG 1610 Query 149591 CATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCG 149650 || | ||||| ||||| | | |||| ||| || |||||||| || | ||||| Sbjct 1611 CAGGTGGTACGTCTCGATCGCCGACTCCACGTCCTCCTTGTGGATGCCCATCGACACGCG 1670 Query 149651 CATCAGCATATGCTGCGGTCGCTCCGCCACTTTG 149684 ||||||||| |||||||| |||||| |||| ||| Sbjct 1671 CATCAGCATGTGCTGCGGACGCTCCACCACCTTG 1704 Score = 203 bits (224), Expect = 3e-47 Identities = 490/723 (68%), Gaps = 34/723 (5%) Strand=Plus/Plus Query 148055 CTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGT-CGCTTTATCT 148113 |||||||||||| ||| | ||||| ||||| |||||||| || | || ||| | || Sbjct 21 CTGGCTCTGGTCGATGTAGGCGCCGCGGTCGGCGGCCATGTCGACCAGCACGCGCTG-CT 79 Query 148114 TCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCT 148173 | |||||||| ||||||||||||| | ||||| | ||||| | |||||| | | Sbjct 80 TGATCTCCCACACCGTCTTGTACAGGCCCTTGAGGTCCTCGGGCA---CGTCGAGGGCCG 136 Query 148174 GCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGT---ATAGGTTGA 148230 |||||| |||| ||| || | | || || | | ||| | || | || | Sbjct 137 CCACCGACCCGCCGTGGGCCACCAGCTCGTT---CTTGAGGTCGGCGTCCCAGAGCCCCA 193 Query 148231 G-CTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACG 148289 | | || | ||||| | | ||| | || || ||||| |||||||| | ||||||| Sbjct 194 GGCGCG-TGAGGTCGTGCAGCAGGTGGTGGTTGACCACGGTGAACTCGCCCGAGAGCACG 252 Query 148290 CGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGC 148349 || |||| || | |||||| || | || || || |||||||||||||||| ||||| Sbjct 253 CGGCGCACGTAGATGTTGCTGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGG 312 Query 148350 GCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTT 148409 ||| | |||||||||||| ||| ||||||||||||||||||| ||| | | Sbjct 313 CTGGTGCTCGCCGTGGGCATGGGCGCCACCAGCAGCGAGTTGCGCAGCCCGTGCTCGCGC 372 Query 148410 A-TTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGC---GGCGACGGTGTCACGTTCCACAT 148465 | | |||| ||| ||| |||||||||| || | || |||||| ||||| Sbjct 373 ACGGTCGCGC-GCAGGGCCTCCCAGTCCCACCGCCCGCTCTGGGGCGTCACGCCCCACAG 431 Query 148466 GTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGT- 148524 ||||| |||||| |||| || || || || |||| | |||||| |||| Sbjct 432 GTCGTGCTGCAGCTTGCCCTGGGACGCCGGAGACCCGGCGTAGGTCTCGTACGGCCCGTC 491 Query 148525 GCGCCGCCGCCAGTTCGCAGCTCGCCTCG-AGCGCGCCGTAGTAAATCGTCTCGGCAATT 148583 ||| || || || ||||| | | || |||||| ||||||| | |||||| || Sbjct 492 GCGGCG-GGCGAGCTCGCA-CGAGGTGCGCAGCGCGGCGTAGTAGACGGTCTCGAAGATG 549 Query 148584 TGCCTGTTGAGCAGCGCCGCCGACTCG---CTTTCGTACGGCATACGCAGCCGCACAAAC 148640 | | ||||||| |||| || |||| | || | ||||| | |||| | | || Sbjct 550 TCGCGGTTGAGCTGCGCGGC---CTCGGGCCCGTCAAAGGGCATGCCCAGCAGGATGAAG 606 Query 148641 GCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGC 148700 |||||||| |||||||| ||||||| ||| ||||| ||||| | ||| | |||| Sbjct 607 GCGTCGGCCAGGCCCTGCACGCCCAGGCCGATGGGGCGGTGCCGGAGGTT---GCTGCGC 663 Query 148701 GCGCTCTC---GAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACC 148757 || | | || || ||||||||| ||||||||| || || |||||| | || Sbjct 664 TCGGCCGCGGGGACGGGGTAGTGGTTGACGTCGATGATGCGGTTCAGGTTGCGCGTCGCC 723 Query 148758 ACC 148760 ||| Sbjct 724 ACC 726 >seq60 Length=8765 Score = 206 bits (228), Expect = 3e-48 Identities = 354/506 (70%), Gaps = 22/506 (4%) Strand=Plus/Minus Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413 ||| || |||||||| ||||| |||||||| || ||||||| || ||| ||| | ||| Sbjct 3040 GTAGTCTCCGACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 2981 Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAGTCG 120473 | |||||||| ||| | ||||| || || ||| |||| |||||||| || Sbjct 2980 CCAGTCGAACGGATTGGTGGCGTTGTAGAGCTTGGGCGCACCCAGGGCGACGAGCAGCCG 2921 Query 120474 GTCCGCT-ACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCA 120532 ||| ||| |||||||||||||||| || ||| || |||||||||| | | ||| Sbjct 2920 GTC-GCTCACAAACTCAATGTACTGGCTCATCAGCTTGCCGTTCATGCCGATGAGATCCA 2862 Query 120533 CCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGA 120592 |||||| || || |||||||||||| || ||||| ||||| | || ||| Sbjct 2861 CCGGCAGGGCATCGCAGACAAACTCCTTCTCGATTTCCACGGCCTC---GCCCA---CGA 2808 Query 120593 GCATAGTGTGGCCG------GGC-ATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCAC 120645 || | || | || ||| | | ||| |||| || | |||| |||||| Sbjct 2807 GC-TGGTTCAGACGCTCGATGGCGAGCGGGTGCTCGA---GCATGGAGTAGAGCAGGCAG 2752 Query 120646 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCG 120705 |||||||| |||||||||||||| || || || || ||||||||| ||| || |||||| Sbjct 2751 GCAAAGTCGGTGTGCAGGCCCTCATCACGAGAGATGAGCTCGTTGGAAAAGGTGAGGCCG 2692 Query 120706 GGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACG 120765 ||||||| || | |||||| || | |||| | |||||||| ||||| | | Sbjct 2691 GGCATGAGACCGCGCTTCTTGACCCAGTAGATGGAGCAGAAGCTGCCGCTGAAGAAAATG 2632 Query 120766 CCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATC 120825 ||||||||| ||||| || |||| |||||| || || || ||| || || |||| Sbjct 2631 CCCTCCACGCACGCAAACGCCACCAGGCGCTCCGCAAAGCTCTCCG---AGCCGTTGATC 2575 Query 120826 CACTTCATGGCCCACTCGGCCTTTTT 120851 || || ||||| |||||||| || Sbjct 2574 CAGCGCAGAGCCCAGTCGGCCTTCTT 2549 >seq2724 Length=1646 Score = 158 bits (174), Expect = 1e-33 Identities = 160/206 (78%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| || ||||| ||| || ||| | | | ||||| |||| Sbjct 1332 ATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCA-TCCTCCAGCT 1390 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||||||| |||| || ||||||||||||||||| ||||| |||||||| ||||| Sbjct 1391 GCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCT 1450 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||| | ||||| | | |||||| |||| ||||| ||| ||||| | Sbjct 1451 TGGCCTTGACGTTCTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCG 1510 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 |||| || || ||||| ||||||||| Sbjct 1511 TCAGCGTCTTGACGAAGATCTGCATG 1536 >seq2314 Length=1923 Score = 152 bits (168), Expect = 5e-32 Identities = 316/458 (69%), Gaps = 23/458 (5%) Strand=Plus/Plus Query 120349 CGCTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTG 120408 |||| |||||| || ||||| ||| |||||||| || ||||||| | ||| ||| Sbjct 1389 CGCTGGTACTCCCCCACGCGGCGCTCGAAAAAGTTCGTCTTGCCCTGGAGCGAGATGAGC 1448 Query 120409 TTCATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGC---TGGCCCAA-CTGTAC 120464 | ||| | ||||| ||||| | || | ||| |||| | ||| | ||| || Sbjct 1449 TCCATCCAGTCGAAGGGGTTCTTGGCCCT---GTAGAGCGGCGCGTAGCCGAGGCTG-AC 1504 Query 120465 GAGCAGTCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCG-CGTTCATGCCCA 120523 |||||| ||||| || || |||| | |||||||| ||||| | ||| ||||||| || | Sbjct 1505 GAGCAGGCGGTCGGCCACGAACTGGACGTACTCGCCCATGG-CGGCGGCGTTCATCCCGA 1563 Query 120524 GCAACGCCACCGGCAACGCCGA---CGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCT 120580 | ||||||| | |||||| |||||| ||| ||| | | |||| ||||||| Sbjct 1564 TGAGATCCACCGGGAGCGCCGAGGCCGTGAA---CTCGCGCTCCAGGGCCACGGCCTCCT 1620 Query 120581 TGAACATGGCG-AGCATAGTGTGGCCGGGCATCTTGTGTTCGATGC-GCGTTCGGTAGTA 120638 || |||||| || | | | |||| || | | ||| || || |||||| Sbjct 1621 CGACGATGGCGTAGGCTTGCG---CCGGACAGAGGGGG--CGACGCAGCCCGCGGTAGAG 1675 Query 120639 CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698 |||||| |||||||| ||||||||||||||||| || || || ||||||||| ||| || Sbjct 1676 CAGGCAGGCAAAGTCGGTGTGCAGGCCCTCGTCCCGAGAAATGAGCTCGTTGGAAAAGGT 1735 Query 120699 CAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAA 120758 || || ||||||| ||| | | |||| || | |||||| ||| ||| || Sbjct 1736 GAGCCCCGGCATGAGGCCGCGCTTTTTGAGCCAGTAGATGGCGCAGAAGGCGCCGCTGAA 1795 Query 120759 GAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCT 120796 | | |||||||||| ||||| || | || ||||| Sbjct 1796 GTGGATGCCCTCCACGCACGCAAACGCCAGCAGGCGCT 1833 >seq3257 Length=1341 Score = 127 bits (140), Expect = 2e-24 Identities = 133/172 (77%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| ||| || ||| | | | ||||| |||||||||| Sbjct 15 GGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCA-TCCTCCAGCTGCTTGC 73 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 ||||| |||| || ||||||||||||||||| ||||| |||||||| |||||| || Sbjct 74 CCGCGAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCT 133 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| | |||| ||||| | | |||||| |||| ||||| ||| ||||| Sbjct 134 TGACGTTTTCAATAGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTGCC 185 >seq55 Length=8980 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| ||| ||| |||||| ||||||||||| Sbjct 4041 GGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCC 4100 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 ||| | || || ||||||||||| || |||||||| |||||||| Sbjct 4101 GGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 4145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483386561721840