Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq114 398 7e-106
seq60 206 3e-48
seq2724 158 1e-33
seq2314 152 5e-32
seq3257 127 2e-24
seq55 95.1 1e-14
>seq114
Length=7431
Score = 398 bits (440), Expect = 7e-106
Identities = 619/874 (71%), Gaps = 17/874 (2%)
Strand=Plus/Plus
Query 148821 GCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCG 148880
||||| ||||| || ||||||||||||||||| || ||||| ||||||| |||||||||
Sbjct 838 GCGATCGAGGCGAGGTTGCACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACGATCTCG 897
Query 148881 GCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCAC 148940
| |||||| |||||||| |||||| ||||| ||||| || ||||||||| ||||||
Sbjct 898 GTGCACAGGTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCGTTGCAG 957
Query 148941 GCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG---AAC 148997
|||||||||||||||||||| || ||| || ||| ||||| |||| ||| |||
Sbjct 958 GCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGCCTCCAAAATGGCGAAC 1017
Query 148998 CGATGCAGGTCCTGCGCGCGCA-CTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGT 149056
| ||| | ||||||||||| | | ||| || ||| ||||| ||||||| |
Sbjct 1018 CA---CAGCTGCTGCGCGCGCATCGTCTTGCGCGC-GCGGCCCTCGCGCTCGTACCGCGC 1073
Query 149057 ATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCA 149116
|| ||| ||| ||| | ||| | || | || || || || || |||||
Sbjct 1074 GTAGAGCGACTCAAACTCGGGGCCCCACACGTCCGCCAGGCCCGGCGCCTCGTTGGGGCA 1133
Query 149117 CATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAG 149176
| || |||| |||||||| | ||||||||||||||||| ||||| | ||| ||
Sbjct 1134 GAACAGGCTCCACTGCCCGTCCGCCTCGACGCGCTTCATAAACAGGTCGGGGATCCACAG 1193
Query 149177 CGCGTACATGAGGTCGCGCGC-CTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGA 149235
| |||| | |||||||| || | || || || ||| ||| |||||||| |
Sbjct 1194 CCCGTAGAACAGGTCGCGGGCGCGAGCC-TCCTCCTTGCCGTGGTTCTTGCGCAGGTCCA 1252
Query 149236 GCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCT 149295
|| | | | |||||||||||| ||||| | ||||||||| | |||||||||||||
Sbjct 1253 GCCAGTCCATCACGTCCGCGTGCCAGGGCTCCAGGTACACCGCAAAGGCGCCCTTGCGCT 1312
Query 149296 TGCCGCC---CTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAA 149352
||||||| |||||| |||| || || ||| ||| ||||| || | ||| || | |
Sbjct 1313 TGCCGCCGCCCTGGTCCACGTACCGAGCCGTGTCGTTGAACACGCGCAGCATGGGCACCA 1372
Query 149353 TGCCACTGGCAGTGCCGTTAGTAGAGCTAATG--CGACTGCCGCGCGCTCGCACTTTGTG 149410
||| || |||||||| || | ||| |||| ||| | || || | | |||
Sbjct 1373 CGCCGTTGCTCGTGCCGTTGGTGCCCCGGATGTACGACC-CCGTG-GCGCGGATGTCGTG 1430
Query 149411 CACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGA 149470
|| || | ||||||||||| || ||| |||||||||||| || ||||||
Sbjct 1431 CATGTGCAGCCCGATGCCGCCCGCGCTCTTGCTGATGGCCGCGCACTCCTTGAGCGTGTC 1490
Query 149471 GTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGG 149530
||||||||||||||||||||||| |||||||| || || |||||| || || |||||
Sbjct 1491 GTAGATGCCCTCGATGCTGTCGCCCTTCATGGCCACCAAAAAGCAGCTGCTCAGCTGCGG 1550
Query 149531 AAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCAT 149590
| ||||| || ||| | || || ||||| || || | ||||||||
Sbjct 1551 GCGGGGGGTGCCCGCGTTGAAGAGCGTCGGCGACGCGTGCGTGAACCAACGCTGGCTCAG 1610
Query 149591 CATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCG 149650
|| | ||||| ||||| | | |||| ||| || |||||||| || | |||||
Sbjct 1611 CAGGTGGTACGTCTCGATCGCCGACTCCACGTCCTCCTTGTGGATGCCCATCGACACGCG 1670
Query 149651 CATCAGCATATGCTGCGGTCGCTCCGCCACTTTG 149684
||||||||| |||||||| |||||| |||| |||
Sbjct 1671 CATCAGCATGTGCTGCGGACGCTCCACCACCTTG 1704
Score = 203 bits (224), Expect = 3e-47
Identities = 490/723 (68%), Gaps = 34/723 (5%)
Strand=Plus/Plus
Query 148055 CTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGT-CGCTTTATCT 148113
|||||||||||| ||| | ||||| ||||| |||||||| || | || ||| | ||
Sbjct 21 CTGGCTCTGGTCGATGTAGGCGCCGCGGTCGGCGGCCATGTCGACCAGCACGCGCTG-CT 79
Query 148114 TCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCT 148173
| |||||||| ||||||||||||| | ||||| | ||||| | |||||| | |
Sbjct 80 TGATCTCCCACACCGTCTTGTACAGGCCCTTGAGGTCCTCGGGCA---CGTCGAGGGCCG 136
Query 148174 GCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGT---ATAGGTTGA 148230
|||||| |||| ||| || | | || || | | ||| | || | || |
Sbjct 137 CCACCGACCCGCCGTGGGCCACCAGCTCGTT---CTTGAGGTCGGCGTCCCAGAGCCCCA 193
Query 148231 G-CTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACG 148289
| | || | ||||| | | ||| | || || ||||| |||||||| | |||||||
Sbjct 194 GGCGCG-TGAGGTCGTGCAGCAGGTGGTGGTTGACCACGGTGAACTCGCCCGAGAGCACG 252
Query 148290 CGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGC 148349
|| |||| || | |||||| || | || || || |||||||||||||||| |||||
Sbjct 253 CGGCGCACGTAGATGTTGCTGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGG 312
Query 148350 GCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTT 148409
||| | |||||||||||| ||| ||||||||||||||||||| ||| | |
Sbjct 313 CTGGTGCTCGCCGTGGGCATGGGCGCCACCAGCAGCGAGTTGCGCAGCCCGTGCTCGCGC 372
Query 148410 A-TTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGC---GGCGACGGTGTCACGTTCCACAT 148465
| | |||| ||| ||| |||||||||| || | || |||||| |||||
Sbjct 373 ACGGTCGCGC-GCAGGGCCTCCCAGTCCCACCGCCCGCTCTGGGGCGTCACGCCCCACAG 431
Query 148466 GTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGT- 148524
||||| |||||| |||| || || || || |||| | |||||| ||||
Sbjct 432 GTCGTGCTGCAGCTTGCCCTGGGACGCCGGAGACCCGGCGTAGGTCTCGTACGGCCCGTC 491
Query 148525 GCGCCGCCGCCAGTTCGCAGCTCGCCTCG-AGCGCGCCGTAGTAAATCGTCTCGGCAATT 148583
||| || || || ||||| | | || |||||| ||||||| | |||||| ||
Sbjct 492 GCGGCG-GGCGAGCTCGCA-CGAGGTGCGCAGCGCGGCGTAGTAGACGGTCTCGAAGATG 549
Query 148584 TGCCTGTTGAGCAGCGCCGCCGACTCG---CTTTCGTACGGCATACGCAGCCGCACAAAC 148640
| | ||||||| |||| || |||| | || | ||||| | |||| | | ||
Sbjct 550 TCGCGGTTGAGCTGCGCGGC---CTCGGGCCCGTCAAAGGGCATGCCCAGCAGGATGAAG 606
Query 148641 GCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGC 148700
|||||||| |||||||| ||||||| ||| ||||| ||||| | ||| | ||||
Sbjct 607 GCGTCGGCCAGGCCCTGCACGCCCAGGCCGATGGGGCGGTGCCGGAGGTT---GCTGCGC 663
Query 148701 GCGCTCTC---GAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACC 148757
|| | | || || ||||||||| ||||||||| || || |||||| | ||
Sbjct 664 TCGGCCGCGGGGACGGGGTAGTGGTTGACGTCGATGATGCGGTTCAGGTTGCGCGTCGCC 723
Query 148758 ACC 148760
|||
Sbjct 724 ACC 726
>seq60
Length=8765
Score = 206 bits (228), Expect = 3e-48
Identities = 354/506 (70%), Gaps = 22/506 (4%)
Strand=Plus/Minus
Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413
||| || |||||||| ||||| |||||||| || ||||||| || ||| ||| | |||
Sbjct 3040 GTAGTCTCCGACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 2981
Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAGTCG 120473
| |||||||| ||| | ||||| || || ||| |||| |||||||| ||
Sbjct 2980 CCAGTCGAACGGATTGGTGGCGTTGTAGAGCTTGGGCGCACCCAGGGCGACGAGCAGCCG 2921
Query 120474 GTCCGCT-ACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCA 120532
||| ||| |||||||||||||||| || ||| || |||||||||| | | |||
Sbjct 2920 GTC-GCTCACAAACTCAATGTACTGGCTCATCAGCTTGCCGTTCATGCCGATGAGATCCA 2862
Query 120533 CCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGA 120592
|||||| || || |||||||||||| || ||||| ||||| | || |||
Sbjct 2861 CCGGCAGGGCATCGCAGACAAACTCCTTCTCGATTTCCACGGCCTC---GCCCA---CGA 2808
Query 120593 GCATAGTGTGGCCG------GGC-ATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCAC 120645
|| | || | || ||| | | ||| |||| || | |||| ||||||
Sbjct 2807 GC-TGGTTCAGACGCTCGATGGCGAGCGGGTGCTCGA---GCATGGAGTAGAGCAGGCAG 2752
Query 120646 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCG 120705
|||||||| |||||||||||||| || || || || ||||||||| ||| || ||||||
Sbjct 2751 GCAAAGTCGGTGTGCAGGCCCTCATCACGAGAGATGAGCTCGTTGGAAAAGGTGAGGCCG 2692
Query 120706 GGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACG 120765
||||||| || | |||||| || | |||| | |||||||| ||||| | |
Sbjct 2691 GGCATGAGACCGCGCTTCTTGACCCAGTAGATGGAGCAGAAGCTGCCGCTGAAGAAAATG 2632
Query 120766 CCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATC 120825
||||||||| ||||| || |||| |||||| || || || ||| || || ||||
Sbjct 2631 CCCTCCACGCACGCAAACGCCACCAGGCGCTCCGCAAAGCTCTCCG---AGCCGTTGATC 2575
Query 120826 CACTTCATGGCCCACTCGGCCTTTTT 120851
|| || ||||| |||||||| ||
Sbjct 2574 CAGCGCAGAGCCCAGTCGGCCTTCTT 2549
>seq2724
Length=1646
Score = 158 bits (174), Expect = 1e-33
Identities = 160/206 (78%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515
||| | ||| ||||| ||||| || ||||| ||| || ||| | | | ||||| ||||
Sbjct 1332 ATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCA-TCCTCCAGCT 1390
Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575
||||||||||| |||| || ||||||||||||||||| ||||| |||||||| |||||
Sbjct 1391 GCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCT 1450
Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635
| ||||| | ||| | ||||| | | |||||| |||| ||||| ||| ||||| |
Sbjct 1451 TGGCCTTGACGTTCTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCG 1510
Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661
|||| || || ||||| |||||||||
Sbjct 1511 TCAGCGTCTTGACGAAGATCTGCATG 1536
>seq2314
Length=1923
Score = 152 bits (168), Expect = 5e-32
Identities = 316/458 (69%), Gaps = 23/458 (5%)
Strand=Plus/Plus
Query 120349 CGCTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTG 120408
|||| |||||| || ||||| ||| |||||||| || ||||||| | ||| |||
Sbjct 1389 CGCTGGTACTCCCCCACGCGGCGCTCGAAAAAGTTCGTCTTGCCCTGGAGCGAGATGAGC 1448
Query 120409 TTCATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGC---TGGCCCAA-CTGTAC 120464
| ||| | ||||| ||||| | || | ||| |||| | ||| | ||| ||
Sbjct 1449 TCCATCCAGTCGAAGGGGTTCTTGGCCCT---GTAGAGCGGCGCGTAGCCGAGGCTG-AC 1504
Query 120465 GAGCAGTCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCG-CGTTCATGCCCA 120523
|||||| ||||| || || |||| | |||||||| ||||| | ||| ||||||| || |
Sbjct 1505 GAGCAGGCGGTCGGCCACGAACTGGACGTACTCGCCCATGG-CGGCGGCGTTCATCCCGA 1563
Query 120524 GCAACGCCACCGGCAACGCCGA---CGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCT 120580
| ||||||| | |||||| |||||| ||| ||| | | |||| |||||||
Sbjct 1564 TGAGATCCACCGGGAGCGCCGAGGCCGTGAA---CTCGCGCTCCAGGGCCACGGCCTCCT 1620
Query 120581 TGAACATGGCG-AGCATAGTGTGGCCGGGCATCTTGTGTTCGATGC-GCGTTCGGTAGTA 120638
|| |||||| || | | | |||| || | | ||| || || ||||||
Sbjct 1621 CGACGATGGCGTAGGCTTGCG---CCGGACAGAGGGGG--CGACGCAGCCCGCGGTAGAG 1675
Query 120639 CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698
|||||| |||||||| ||||||||||||||||| || || || ||||||||| ||| ||
Sbjct 1676 CAGGCAGGCAAAGTCGGTGTGCAGGCCCTCGTCCCGAGAAATGAGCTCGTTGGAAAAGGT 1735
Query 120699 CAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAA 120758
|| || ||||||| ||| | | |||| || | |||||| ||| ||| ||
Sbjct 1736 GAGCCCCGGCATGAGGCCGCGCTTTTTGAGCCAGTAGATGGCGCAGAAGGCGCCGCTGAA 1795
Query 120759 GAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCT 120796
| | |||||||||| ||||| || | || |||||
Sbjct 1796 GTGGATGCCCTCCACGCACGCAAACGCCAGCAGGCGCT 1833
>seq3257
Length=1341
Score = 127 bits (140), Expect = 2e-24
Identities = 133/172 (77%), Gaps = 2/172 (1%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| ||||| ||||| || ||||| ||| || ||| | | | ||||| ||||||||||
Sbjct 15 GGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCA-TCCTCCAGCTGCTTGC 73
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
||||| |||| || ||||||||||||||||| ||||| |||||||| |||||| ||
Sbjct 74 CCGCGAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCT 133
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
||| | |||| ||||| | | |||||| |||| ||||| ||| |||||
Sbjct 134 TGACGTTTTCAATAGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTGCC 185
>seq55
Length=8980
Score = 95.1 bits (104), Expect = 1e-14
Identities = 84/105 (80%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||||||||| ||||| || ||||| ||| ||| ||| |||||| |||||||||||
Sbjct 4041 GGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCC 4100
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567
||| | || || ||||||||||| || |||||||| ||||||||
Sbjct 4101 GGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 4145
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483386561721840
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