Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq114 244 1e-59
>seq114
Length=7431
Score = 244 bits (270), Expect = 1e-59
Identities = 580/868 (67%), Gaps = 25/868 (3%)
Strand=Plus/Plus
Query 147460 GCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCG 147519
||||| || || || ||||| ||||||||||| |||| | | |||||| ||||| |||
Sbjct 838 GCGATCGAGGCGAGGTTGCACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACGATCTCG 897
Query 147520 GCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCAC 147579
| ||||||||||||||| || || |||| || ||||| ||||| || |||||
Sbjct 898 GTGCACAGGTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCGTTGCAG 957
Query 147580 GCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTC---AACGATAAAC 147636
||||| ||| | |||||||| || ||| ||||| |||| || || | |||
Sbjct 958 GCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGCCTCCAAAATGGCGAAC 1017
Query 147637 CTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCG 147696
| ||| | |||||| |||| | || || |||||||||| ||||||||| ||
Sbjct 1018 C---ACAGCTGCTGCGCGCGCATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACCGCGCG 1074
Query 147697 TACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACAC 147756
|| | | |||||||||| ||| | || || ||||| || || | || ||
Sbjct 1075 TAGAGCGACTCAAACTCGGGGCCCCACACGTCCGCCAGGCCCGGCGCCTCGTTGGGGCAG 1134
Query 147757 ATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGC 147816
| ||| |||| ||||||| | ||||| ||||||||| || || | |||||||
Sbjct 1135 AACAGGCTCCACTGCCCGTCCGCCTCGACGCGCTTCATAAACAGGTCGGGGATCCACAGC 1194
Query 147817 GCGTACATAAGATCGCGCGCTTTGCAA------TCCTCGGCGCCCATGTTGCGTTTCAAA 147870
|||| | || ||||| || || | |||| | || | ||||| ||
Sbjct 1195 CCGTAGAACAGGTCGCGGGC---GCGAGCCTCCTCCTTGCCGTGGTTCTTGCG---CAGG 1248
Query 147871 TTAAG-CACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTT 147929
| || || | || | ||| ||||||||||| || | ||| || || | || || ||
Sbjct 1249 TCCAGCCAGTCCAT-CACGTCCGCGTGCCAGGGCTCCAGGTACACCGCAAAGGCGCCCTT 1307
Query 147930 ACGCTT---TCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGG 147986
||||| ||||||||||| || | || || ||| ||| |||||||||| ||||||
Sbjct 1308 GCGCTTGCCGCCGCCCTGGTCCACGTACCGAGCCGTGTCGTTGAACACGCGCAGCATGGG 1367
Query 147987 TTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCG-GGCTCGCACTT 148045
||| |||| | |||||||||||| ||| | | || || ||| || | |
Sbjct 1368 CACCACGCCGTTGCTCGTGCCGTTGGTGCCCCGGAT-GTACGACCCCGTGGCGCGGATGT 1426
Query 148046 CGTGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATG 148105
|||||| || | || |||||||| || ||| ||||| ||||| || | |
Sbjct 1427 CGTGCATGTGCAGCCCGATGCCGCCCGCGCTCTTGCTGATGGCCGCGCACTCCTTGAGCG 1486
Query 148106 TCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTT 148165
| ||||||||| |||||||||||| || | | | | |||||| || | || |
Sbjct 1487 TGTCGTAGATGCCCTCGATGCTGTCGCCCTTCATGGCCACCAAAAAGCAGCTGCTCAGCT 1546
Query 148166 GCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGAC 148225
|||| | || ||||| ||| || || || ||||||||| ||| | || |
Sbjct 1547 GCGGGCGGGGGGTGCCCGCGTTGAAGAGCGTCGGCGACGCGTGCGTGAACCAACGCTGGC 1606
Query 148226 TCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGA 148285
||| || | | |||||||| || || || | ||| || ||| ||||||| || |
Sbjct 1607 TCAGCAGGTGGTACGTCTCGATCGCCGACTCCACGTCCTCCTTGTGGATGCCCATCGACA 1666
Query 148286 CGCGCATGAGCATGTGCTGTGGTCGTTC 148313
||||||| ||||||||||| || || ||
Sbjct 1667 CGCGCATCAGCATGTGCTGCGGACGCTC 1694
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476577444011760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |