Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq114 244 1e-59 >seq114 Length=7431 Score = 244 bits (270), Expect = 1e-59 Identities = 580/868 (67%), Gaps = 25/868 (3%) Strand=Plus/Plus Query 147460 GCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCG 147519 ||||| || || || ||||| ||||||||||| |||| | | |||||| ||||| ||| Sbjct 838 GCGATCGAGGCGAGGTTGCACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACGATCTCG 897 Query 147520 GCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCAC 147579 | ||||||||||||||| || || |||| || ||||| ||||| || ||||| Sbjct 898 GTGCACAGGTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCGTTGCAG 957 Query 147580 GCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTC---AACGATAAAC 147636 ||||| ||| | |||||||| || ||| ||||| |||| || || | ||| Sbjct 958 GCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGCCTCCAAAATGGCGAAC 1017 Query 147637 CTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCG 147696 | ||| | |||||| |||| | || || |||||||||| ||||||||| || Sbjct 1018 C---ACAGCTGCTGCGCGCGCATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACCGCGCG 1074 Query 147697 TACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACAC 147756 || | | |||||||||| ||| | || || ||||| || || | || || Sbjct 1075 TAGAGCGACTCAAACTCGGGGCCCCACACGTCCGCCAGGCCCGGCGCCTCGTTGGGGCAG 1134 Query 147757 ATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGC 147816 | ||| |||| ||||||| | ||||| ||||||||| || || | ||||||| Sbjct 1135 AACAGGCTCCACTGCCCGTCCGCCTCGACGCGCTTCATAAACAGGTCGGGGATCCACAGC 1194 Query 147817 GCGTACATAAGATCGCGCGCTTTGCAA------TCCTCGGCGCCCATGTTGCGTTTCAAA 147870 |||| | || ||||| || || | |||| | || | ||||| || Sbjct 1195 CCGTAGAACAGGTCGCGGGC---GCGAGCCTCCTCCTTGCCGTGGTTCTTGCG---CAGG 1248 Query 147871 TTAAG-CACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTT 147929 | || || | || | ||| ||||||||||| || | ||| || || | || || || Sbjct 1249 TCCAGCCAGTCCAT-CACGTCCGCGTGCCAGGGCTCCAGGTACACCGCAAAGGCGCCCTT 1307 Query 147930 ACGCTT---TCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGG 147986 ||||| ||||||||||| || | || || ||| ||| |||||||||| |||||| Sbjct 1308 GCGCTTGCCGCCGCCCTGGTCCACGTACCGAGCCGTGTCGTTGAACACGCGCAGCATGGG 1367 Query 147987 TTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCG-GGCTCGCACTT 148045 ||| |||| | |||||||||||| ||| | | || || ||| || | | Sbjct 1368 CACCACGCCGTTGCTCGTGCCGTTGGTGCCCCGGAT-GTACGACCCCGTGGCGCGGATGT 1426 Query 148046 CGTGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATG 148105 |||||| || | || |||||||| || ||| ||||| ||||| || | | Sbjct 1427 CGTGCATGTGCAGCCCGATGCCGCCCGCGCTCTTGCTGATGGCCGCGCACTCCTTGAGCG 1486 Query 148106 TCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTT 148165 | ||||||||| |||||||||||| || | | | | |||||| || | || | Sbjct 1487 TGTCGTAGATGCCCTCGATGCTGTCGCCCTTCATGGCCACCAAAAAGCAGCTGCTCAGCT 1546 Query 148166 GCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGAC 148225 |||| | || ||||| ||| || || || ||||||||| ||| | || | Sbjct 1547 GCGGGCGGGGGGTGCCCGCGTTGAAGAGCGTCGGCGACGCGTGCGTGAACCAACGCTGGC 1606 Query 148226 TCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGA 148285 ||| || | | |||||||| || || || | ||| || ||| ||||||| || | Sbjct 1607 TCAGCAGGTGGTACGTCTCGATCGCCGACTCCACGTCCTCCTTGTGGATGCCCATCGACA 1666 Query 148286 CGCGCATGAGCATGTGCTGTGGTCGTTC 148313 ||||||| ||||||||||| || || || Sbjct 1667 CGCGCATCAGCATGTGCTGCGGACGCTC 1694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476577444011760