Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq2296 316 2e-81 >seq2296 Length=1937 Score = 316 bits (350), Expect = 2e-81 Identities = 472/657 (72%), Gaps = 16/657 (2%) Strand=Plus/Plus Query 146917 TTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCC 146976 || |||||||| ||||||||| ||||||||| ||||| || ||| ||| | ||| ||| Sbjct 102 TTGAGGGGCTCGACGTGGTTGGCGTAGACGTGGGCGTCGCCGAGGACGTGAAAAAACTCC 161 Query 146977 CCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATG 147036 || || |||||| || ||||| | |||| |||||| || | |||| || ||| Sbjct 162 CCTGGGCGGAGGCCGCAGACCTGGGCGAGCATGCGGGTGAGGAGGGCGTAGGAAGCGATG 221 Query 147037 TTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCC 147096 |||||||| || |||||||| | ||| |||| | |||||||| ||| |||||||| Sbjct 222 TTGAAGGGCACGCCCAGGCCGAGGTCTGCCGAGCGCTGGTACATGGAGCAGGAGAGCTCT 281 Query 147097 CCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCA-TGGCGGGCAG 147155 || ||||||| | |||||| || | |||||| |||||||| |||| | ||||| | Sbjct 282 CCCCGGGCCACGAAGAACTGGGCGAGCACGTGGCAGGGCGGCAGGGCCATTTGCGGG-AT 340 Query 147156 GTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTC-GGGGTTCCTCTTAATCT 147214 | | | |||||||||||| ||| || ||| |||| | || | |||||| |||| || Sbjct 341 GGCGGTGGGGTTCCAGGCGCAGAGCAGCAGGCGCC-GGTCGCAGGGGTTGGTCTTGATGC 399 Query 147215 CTTCGA-TAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTC 147272 | || || | | | ||||||||||||||| || | ||| | | | ||| ||| Sbjct 400 GGTGGACTAGGTCGGC-AACCTGGTCCACGCCCTGCCCGGCATAG-TCGGCGTGCATGTC 457 Query 147273 CACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGG 147332 |||| ||| |||||||| | |||||| ||||||||||| ||||||| |||||| Sbjct 458 GGCGTAGGCGGCGCCAAAGTGGCGCCACTGAAAGCCGTACACGGGCCCCAAGTCGCCCTC 517 Query 147333 CTTTCTGTGCGAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGAT 147392 || | |||| | |||| | | ||||| || |||| |||| | ||||||| || Sbjct 518 CTCGCGGTGCTGCAGGCCCAGCGAGTCCAGAAAAGCGCGGGATCCGTTGCCGTCCCAAAT 577 Query 147393 GCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAG 147452 |||||| |||||||| ||| || | ||| ||||||||| | |||||||||||| Sbjct 578 GCCCACGCCCTTGGCCTTGAGTCTGTTGGCGTCGGTGGAGCCCGCCAGGAACCAGAGCAG 637 Query 147453 CTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGTCCCT 147512 ||| |||| || || | ||| || || | ||||||||| ||||| || || || || Sbjct 638 CTCTTCCACCACGCCGCGCCAGAACACGCGCTTGGTGGTAAGCAGCGGAAAGCTGTGCCG 697 Query 147513 CAG--CGAATACCTCGCCTGGTCC--CCAAACACAGACAGCGTGCCCGTGCCCGTCC 147565 ||| ||| ||| |||| | |||||||| | |||||| |||||||| |||| Sbjct 698 CAGGTTGAA----GCGCATGGTGCGACCAAACACCGCCAGCGTTCCCGTGCCGGTCC 750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583446674462400