Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq114 187 3e-42 seq2724 102 8e-17 seq3257 98.7 1e-15 seq55 91.5 1e-13 >seq114 Length=7431 Score = 187 bits (206), Expect = 3e-42 Identities = 559/851 (66%), Gaps = 19/851 (2%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || ||||||||| |||||||| || ||||||| ||| || ||| | || | || | Sbjct 1685 CAGCACATGCTGATGCGCGTGTCGATGGGCATCCACAAGGAGGACGTGGAGTCGGCGATC 1626 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || |||||||| || || | ||| |||||||| ||||| || | || | Sbjct 1625 GAGACGTACCACCTGCTGAGCCAGCGTTGGTTCACGCACGCGTCGCCGACGCTCTTCAAC 1566 Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743 |||||||| | || || || | || |||||| | ||||| | |||||| Sbjct 1565 GCGGGCACCCCCCGCCCGCAGCTGAGCAGCTGCTTTTTGGTGGCCATGAAGGGCGACAGC 1506 Query 7744 ATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGA 7803 ||||| ||||| ||| ||||||| || ||||| || ||| || ||||| Sbjct 1505 ATCGAGGGCATCTACGACACGCTCAAGGAGTGCGCGGCCATCAGCAAGAGCGCGGGCGGC 1446 Query 7804 ATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCG--CATCGTGTCCACCAACG 7861 || || ||| || | ||||| | ||||||| || | || |||| | |||||||| Sbjct 1445 ATCGGGCTGCACATGCACGACATCCGCGCCACGGG--GTCGTACATCCGGGGCACCAACG 1388 Query 7862 GAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAG 7921 | | || ||| | | ||||||| ||||||||||||| || ||| || | || | Sbjct 1387 GCACGAGCAACGGCGTGGTGCCCATGCTGCGCGTGTTCAACGACACGGCTCGGTACGTGG 1328 Query 7922 ACCAG---GGGGGAAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGG 7978 ||||| || || |||||||| |||||| ||| | || ||||||| |||||||||| Sbjct 1327 ACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCGGTGTACCTGGAGCCCTGGCACGCGG 1268 Query 7979 ACATTTACGCAGT-GCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGC 8037 || | | | | | ||| | ||||| ||| || || || || ||| Sbjct 1267 AC-GTGATGGACTGGCTGGACCTGCGCAAGAACCACGGCAAGGAGGAGGCTCGCGCCCGC 1209 Query 8038 GATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCA 8097 || || |||| ||| ||||| | ||||| |||||||||| |||||| | |||| Sbjct 1208 GACCTGTTCTACGGGCTGTGGATCCCCGACCTGTTTATGAAGCGCGTCGAGGCGGACGGG 1149 Query 8098 CAATGGTCGCTCATGTGCCCCGATCGTTGC-CCTTTATTAAAAAACGTTTACGGTTCAAA 8156 || ||| || | |||||| | || || || | |||| | || | | Sbjct 1148 CAGTGGAGCCTGTTCTGCCCC-AACGAGGCGCCGGGCCTGGCGGACGTGTGGGGCCCCGA 1090 Query 8157 ATTTGAACAATTGTACAAACAATACGAACACGACGGCGCGTACGTGCGGCAAGTGAAAGC 8216 ||||| | ||| | ||||| | ||| ||| || || || ||||| | || Sbjct 1089 GTTTGAGTCGCTCTACGCGCGGTACGAGCGCGAGGGC-CG--CGCGC-GCAAGACGATGC 1034 Query 8217 GCGCG----ACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACA 8272 ||||| | ||| ||||||| | || || | || || || | ||| |||| Sbjct 1033 GCGCGCAGCAGCTGTGGTTCGCCATTTTGGAGGCGCAGACGGAGACGGGCACGCCCTACA 974 Query 8273 TGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTT 8332 |||||||||| ||||| ||||||||||| ||||| || ||| ||||||| || | Sbjct 973 TGCTGTACAAGGACGCCTGCAACGCCAAGAGCAACCAGCAGAACCTGGGCACGATCAAGT 914 Query 8333 GCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCA 8392 ||||||| |||||| | || || || |||||| || |||||||| |||||| |||| Sbjct 913 GCAGCAACCTGTGCACCGAGATCGTCGAGTACACGGCCCCCGACGAGACGGCCGTGTGCA 854 Query 8393 ATCTAGCGTCG 8403 | || || ||| Sbjct 853 ACCTCGCCTCG 843 >seq2724 Length=1646 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || || || || || ||||| || |||||||||||| | ||| | || || Sbjct 1327 ACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCC 1386 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || ||||||| |||||||| ||||| || ||||| || || || || Sbjct 1387 AGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGG 1446 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| || | ||||| || || ||||| ||||| || ||||| || Sbjct 1447 ATCTTGGCCTTGACGTTCTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTG 1506 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || || ||||| || ||||| Sbjct 1507 CCCGTCAGCGTCTTGACGAAGATCTGCAT 1535 >seq3257 Length=1341 Score = 98.7 bits (108), Expect = 1e-15 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || || || ||||| || |||||||||||| | ||| | || || Sbjct 4 ACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCC 63 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || ||||||| |||||||| ||||| || ||||| || || || || Sbjct 64 AGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGG 123 Query 134625 ATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 || || |||| || | |||| ||||| || || ||||| ||||| || ||||| || Sbjct 124 ATCTTGGCCTTGA-CGTTTTCAATAGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTT 182 Query 134684 ACC 134686 || Sbjct 183 GCC 185 >seq55 Length=8980 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || ||||| ||||| || |||||||||||| | | |||| | ||| || Sbjct 4030 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCC 4089 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || || |||| |||||||| || || || ||||| || || || ||| Sbjct 4090 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGA 4149 Query 134625 ATTTT 134629 || || Sbjct 4150 ATCTT 4154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505362605158320