Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq114 113 1e-19
seq60 102 3e-16
>seq114
Length=7431
Score = 113 bits (124), Expect = 1e-19
Identities = 124/165 (75%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 256133 GAGCACGGACTGCGCAACTCGCAACGATTGGCGCCCATGCCAACCGCCAGCACCGCTCAA 256192
|||||||| ||||||||||||| | ||||||||||||| || || |||||| ||
Sbjct 368 GAGCACGGGCTGCGCAACTCGCTGCTGGTGGCGCCCATGCCCACGGCGAGCACCAGCCAG 309
Query 256193 ATCCTGGGTAACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCGCGCCGCGTT 256252
||| |||| ||| || || |||| ||| || | |||| ||| | |||||||||
Sbjct 308 ATCTTGGGCAACAACGAGTGCTTCGAGCCCTACACCAGCAACATCTACGTGCGCCGCGTG 249
Query 256253 CGCTCCGGCGAGTTCGCCGTGGTGAACCAGTACTTGGTGGACGAC 256297
| ||| ||||||||| ||||||| ||||| || || || |||||
Sbjct 248 CTCTCGGGCGAGTTCACCGTGGTCAACCACCACCTGCTGCACGAC 204
Score = 100 bits (110), Expect = 9e-16
Identities = 489/769 (64%), Gaps = 12/769 (2%)
Strand=Plus/Minus
Query 254751 GGTACACGCATGCGACCCCGACTCTCTTCACGGCCGGTCTGAAGCGCCAAACCTTGGCCA 254810
||| |||||| ||| | ||||| ||||||| || || |||| || ||
Sbjct 1597 GGTTCACGCACGCGTCGCCGACGCTCTTCAACGCGGGCACCCCCCGCCCGCAGCTGAGCA 1538
Query 254811 GCTGCTACCTACTGACCATCAGTGAAGACAGTATCCAAGGCATCTTCGAAACGCTATCGC 254870
|||||| | || |||| | | ||||| ||| | ||||||| ||| ||||| |
Sbjct 1537 GCTGCTTTTTGGTGGCCATGAAGGGCGACAGCATCGAGGGCATCTACGACACGCTCAAGG 1478
Query 254871 GATGCGCATTCGTGAGTCAATCGAGCGG-CGGCGTGGGACTCAACATCTCCAACGTGCGC 254929
||||| | | || ||| | |||| |||| | || || |||| | || | |||
Sbjct 1477 AGTGCGCGGCCATCAG-CAAGAGCGCGGGCGGCATCGGGCTGCACATGCACGACATCCGC 1419
Query 254930 GCCAGCGGCACACCGATTCGCTCGACGAACGGACGGAGCGGCGGCATTATACCAATGATC 254989
|||| || | || || || ||||| |||| |||| | | || ||| |
Sbjct 1418 GCCACGGGGTCGTACATCCGGGGCACCAACGGCACGAGCAACGGCGTGGTGCCCATGCTG 1359
Query 254990 CGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGCCCAGGAGCG 255049
|| ||||||||| || |||||| ||||| || || || |||||||| ||| || ||
Sbjct 1358 CGCGTGTTCAACGACACGGCTCGGTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCGCC 1299
Query 255050 TTCACCATCTACCTGGAGCCGTGGCACGCCGACAT--TGAACGGTTTTTACTGCTGTCCG 255107
|| | | ||||||||||| |||||||| ||| | || || | | || ||| |
Sbjct 1298 TTTGCGGTGTACCTGGAGCCCTGGCACGCGGACGTGATGGACTGGCTGGAC--CTGCGCA 1241
Query 255108 ACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTGTCTGGTGCTGCG 255167
| || ||||| |||||| |||||||||| | | | || | ||| | ||
Sbjct 1240 AGAACCACGGCAAGGAGGAGGCTCGCGCCCGCGACCTGTTCTACGGGCTGTGGATCCCCG 1181
Query 255168 ATCTGTTTATGCGACGCGTGGAACGAGACGAGACCTGGAGCCTCATGTGTCCCAACTTAT 255227
| ||||||||| ||||| || |||| | |||||||| | || ||||||
Sbjct 1180 ACCTGTTTATGAAGCGCGTCGAGGCGGACGGGCAGTGGAGCCTGTTCTGCCCCAACGAGG 1121
Query 255228 CGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTGTATCTGGAGTACGAGC 255287
|||| || || | ||| ||||| ||||||||| || || | ||||||||
Sbjct 1120 CGCCGGGCCTGGCGGACGTGTGGGGCCCCGAGTTTGAGTCGCTCTACGCGCGGTACGAGC 1061
Query 255288 GTGCCGGCCG-GTTCGTACGCCAAGTGCCCGCGAAGAAGATCTGGAACACGATGGTGCGC 255346
| | ||||| | || | | | | ||| |||| || || | ||| | | || ||
Sbjct 1060 GCGAGGGCCGCGCGCGCAAGACGA-TGCGCGCGCAGCAGCTGTGGTTCGCCATTTTGGAG 1002
Query 255347 ATGCAGCTGGAAACCGGAATGCCGTTCCTATTGCACAAAGACCACATAAACGCACGGTCG 255406
|||| ||| || || | ||| | | | || |||| ||| | ||||| |
Sbjct 1001 GCGCAGACGGAGACGGGCACGCCCTACATGCTGTACAAGGACGCCTGCAACGCCAAGAGC 942
Query 255407 AACCAACGCCACCGCGGTACGATACGCGGCTCGAACCTGTGCACCGAGATTACGT--TGC 255464
||||| | ||| || ||||| || ||||||||||||||||| ||| |
Sbjct 941 AACCAGCAGAACCTGGGCACGATCAAGTGCAGCAACCTGTGCACCGAGAT--CGTCGAGT 884
Query 255465 ACACGTCAGCGCAAGAGGTGGCCGTTTGCAACTTGGCGTCCATCTCGCT 255513
||||| | | | ||| |||||| |||||| | || || ||| ||||
Sbjct 883 ACACGGCCCCCGACGAGACGGCCGTGTGCAACCTCGCCTCGATCGCGCT 835
>seq60
Length=8765
Score = 102 bits (112), Expect = 3e-16
Identities = 133/180 (74%), Gaps = 3/180 (2%)
Strand=Plus/Plus
Query 443697 AGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTG-GTCGAAGGACTGTTGTTTAGCGGCAG 443755
||||| | ||||| || || || ||||| ||| || || || | || || ||||||||
Sbjct 2591 AGCTTTGCGGAGCGCCTGGTGGCGTTTGC-GTGCGTGGAGGGCATTTTCTTCAGCGGCAG 2649
Query 443756 CTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTA 443815
||| | |||||||| |||| | || ||||| || || |||| ||| || |||||| |
Sbjct 2650 CTTCTG-CTCCATCTACTGGGTCAAGAAGCGCGGTCTCATGCCCGGCCTCACCTTTTCCA 2708
Query 443816 ACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCA 443875
|||| || ||| ||| || ||||| |||| |||||| ||||| || |||||| |||
Sbjct 2709 ACGAGCTCATCTCTCGTGATGAGGGCCTGCACACCGACTTTGCCTGCCTGCTCTACTCCA 2768
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1588220693755370
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