Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq114 113 1e-19 seq60 102 3e-16 >seq114 Length=7431 Score = 113 bits (124), Expect = 1e-19 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 256133 GAGCACGGACTGCGCAACTCGCAACGATTGGCGCCCATGCCAACCGCCAGCACCGCTCAA 256192 |||||||| ||||||||||||| | ||||||||||||| || || |||||| || Sbjct 368 GAGCACGGGCTGCGCAACTCGCTGCTGGTGGCGCCCATGCCCACGGCGAGCACCAGCCAG 309 Query 256193 ATCCTGGGTAACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCGCGCCGCGTT 256252 ||| |||| ||| || || |||| ||| || | |||| ||| | ||||||||| Sbjct 308 ATCTTGGGCAACAACGAGTGCTTCGAGCCCTACACCAGCAACATCTACGTGCGCCGCGTG 249 Query 256253 CGCTCCGGCGAGTTCGCCGTGGTGAACCAGTACTTGGTGGACGAC 256297 | ||| ||||||||| ||||||| ||||| || || || ||||| Sbjct 248 CTCTCGGGCGAGTTCACCGTGGTCAACCACCACCTGCTGCACGAC 204 Score = 100 bits (110), Expect = 9e-16 Identities = 489/769 (64%), Gaps = 12/769 (2%) Strand=Plus/Minus Query 254751 GGTACACGCATGCGACCCCGACTCTCTTCACGGCCGGTCTGAAGCGCCAAACCTTGGCCA 254810 ||| |||||| ||| | ||||| ||||||| || || |||| || || Sbjct 1597 GGTTCACGCACGCGTCGCCGACGCTCTTCAACGCGGGCACCCCCCGCCCGCAGCTGAGCA 1538 Query 254811 GCTGCTACCTACTGACCATCAGTGAAGACAGTATCCAAGGCATCTTCGAAACGCTATCGC 254870 |||||| | || |||| | | ||||| ||| | ||||||| ||| ||||| | Sbjct 1537 GCTGCTTTTTGGTGGCCATGAAGGGCGACAGCATCGAGGGCATCTACGACACGCTCAAGG 1478 Query 254871 GATGCGCATTCGTGAGTCAATCGAGCGG-CGGCGTGGGACTCAACATCTCCAACGTGCGC 254929 ||||| | | || ||| | |||| |||| | || || |||| | || | ||| Sbjct 1477 AGTGCGCGGCCATCAG-CAAGAGCGCGGGCGGCATCGGGCTGCACATGCACGACATCCGC 1419 Query 254930 GCCAGCGGCACACCGATTCGCTCGACGAACGGACGGAGCGGCGGCATTATACCAATGATC 254989 |||| || | || || || ||||| |||| |||| | | || ||| | Sbjct 1418 GCCACGGGGTCGTACATCCGGGGCACCAACGGCACGAGCAACGGCGTGGTGCCCATGCTG 1359 Query 254990 CGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGCCCAGGAGCG 255049 || ||||||||| || |||||| ||||| || || || |||||||| ||| || || Sbjct 1358 CGCGTGTTCAACGACACGGCTCGGTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCGCC 1299 Query 255050 TTCACCATCTACCTGGAGCCGTGGCACGCCGACAT--TGAACGGTTTTTACTGCTGTCCG 255107 || | | ||||||||||| |||||||| ||| | || || | | || ||| | Sbjct 1298 TTTGCGGTGTACCTGGAGCCCTGGCACGCGGACGTGATGGACTGGCTGGAC--CTGCGCA 1241 Query 255108 ACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTGTCTGGTGCTGCG 255167 | || ||||| |||||| |||||||||| | | | || | ||| | || Sbjct 1240 AGAACCACGGCAAGGAGGAGGCTCGCGCCCGCGACCTGTTCTACGGGCTGTGGATCCCCG 1181 Query 255168 ATCTGTTTATGCGACGCGTGGAACGAGACGAGACCTGGAGCCTCATGTGTCCCAACTTAT 255227 | ||||||||| ||||| || |||| | |||||||| | || |||||| Sbjct 1180 ACCTGTTTATGAAGCGCGTCGAGGCGGACGGGCAGTGGAGCCTGTTCTGCCCCAACGAGG 1121 Query 255228 CGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTGTATCTGGAGTACGAGC 255287 |||| || || | ||| ||||| ||||||||| || || | |||||||| Sbjct 1120 CGCCGGGCCTGGCGGACGTGTGGGGCCCCGAGTTTGAGTCGCTCTACGCGCGGTACGAGC 1061 Query 255288 GTGCCGGCCG-GTTCGTACGCCAAGTGCCCGCGAAGAAGATCTGGAACACGATGGTGCGC 255346 | | ||||| | || | | | | ||| |||| || || | ||| | | || || Sbjct 1060 GCGAGGGCCGCGCGCGCAAGACGA-TGCGCGCGCAGCAGCTGTGGTTCGCCATTTTGGAG 1002 Query 255347 ATGCAGCTGGAAACCGGAATGCCGTTCCTATTGCACAAAGACCACATAAACGCACGGTCG 255406 |||| ||| || || | ||| | | | || |||| ||| | ||||| | Sbjct 1001 GCGCAGACGGAGACGGGCACGCCCTACATGCTGTACAAGGACGCCTGCAACGCCAAGAGC 942 Query 255407 AACCAACGCCACCGCGGTACGATACGCGGCTCGAACCTGTGCACCGAGATTACGT--TGC 255464 ||||| | ||| || ||||| || ||||||||||||||||| ||| | Sbjct 941 AACCAGCAGAACCTGGGCACGATCAAGTGCAGCAACCTGTGCACCGAGAT--CGTCGAGT 884 Query 255465 ACACGTCAGCGCAAGAGGTGGCCGTTTGCAACTTGGCGTCCATCTCGCT 255513 ||||| | | | ||| |||||| |||||| | || || ||| |||| Sbjct 883 ACACGGCCCCCGACGAGACGGCCGTGTGCAACCTCGCCTCGATCGCGCT 835 >seq60 Length=8765 Score = 102 bits (112), Expect = 3e-16 Identities = 133/180 (74%), Gaps = 3/180 (2%) Strand=Plus/Plus Query 443697 AGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTG-GTCGAAGGACTGTTGTTTAGCGGCAG 443755 ||||| | ||||| || || || ||||| ||| || || || | || || |||||||| Sbjct 2591 AGCTTTGCGGAGCGCCTGGTGGCGTTTGC-GTGCGTGGAGGGCATTTTCTTCAGCGGCAG 2649 Query 443756 CTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTA 443815 ||| | |||||||| |||| | || ||||| || || |||| ||| || |||||| | Sbjct 2650 CTTCTG-CTCCATCTACTGGGTCAAGAAGCGCGGTCTCATGCCCGGCCTCACCTTTTCCA 2708 Query 443816 ACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCA 443875 |||| || ||| ||| || ||||| |||| |||||| ||||| || |||||| ||| Sbjct 2709 ACGAGCTCATCTCTCGTGATGAGGGCCTGCACACCGACTTTGCCTGCCTGCTCTACTCCA 2768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588220693755370