Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq114 215 6e-51
seq81 150 2e-31
seq60 118 1e-21
seq2314 100 4e-16
>seq114
Length=7431
Score = 215 bits (238), Expect = 6e-51
Identities = 568/861 (66%), Gaps = 11/861 (1%)
Strand=Plus/Plus
Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289
|| || ||||| || || | ||||| || |||||||| || | |||||||| |
Sbjct 832 GGCAGCGCGATCGAGGCGAGGTTGCACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACG 891
Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349
|| || || || | |||| | ||| ||||| |||| |||| ||||| ||||| |
Sbjct 892 ATCTCGGTGCACAGGTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCG 951
Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409
||||| || |||||||| |||||||||||||| |||||||||||||| | | | |||
Sbjct 952 TTGCAGGCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGCCTCCAAAATG 1011
Query 111410 GCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTG---GCCCGTCCCTCCGCCTCGTAC 111466
|| || ||| | || || | | || | ||| || || ||||| |||||||
Sbjct 1012 GCGAACC--ACAGCTGCTGCGCGCGC-ATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTAC 1068
Query 111467 TTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCT 111526
| |||||| | |||||||| ||| | |||| | || || || |||| ||
Sbjct 1069 CGCGCGTAGAGCGACTCAAACTCGGGGCCCCACACGTCCGCCAGGCCCGGCGCCTCGTTG 1128
Query 111527 GGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 111586
|| ||||| || ||| || || | |||| || |||||||| || ||||| || |||
Sbjct 1129 GGGCAGAACAGGCTCCACTGCCCGTCCGCCTCGACGCGCTTCATAAACAGGTCGGGGATC 1188
Query 111587 CACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC 111646
||||| | || || || | |||||||| || | || ||||| || |
Sbjct 1189 CACAGCCCGTAGAACAGGTCGCGGGCGCGAGCCTCCTCCTTGCCGTGGTTCTTGCGCAGG 1248
Query 111647 TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTT 111706
|| || | ||||| | ||||||||||| ||||| || || || || | | |||||
Sbjct 1249 TCCAGCCAGTCCATCACGTCCGCGTGCCAGGGCTCCAGGTACACCGCAAAGGCGCCCTTG 1308
Query 111707 CG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGA 111763
|| | || | || | || || || || ||| |||| || ||||| ||||| ||
Sbjct 1309 CGCTTGCCGCCGCCCTGGTCCACGTACCGAGCCGTGTCGTTGAACACGCGCAGCATGGGC 1368
Query 111764 ATAATACCATCTGATTG-ACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATC 111822
| | || | || | | || || || ||||| || || |||| | | ||
Sbjct 1369 ACCACGCCGT-TGCTCGTGCCGTTGGTGCCCCGGATGTACGACCCCGTGGCGCGGATGTC 1427
Query 111823 ATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGT 111882
|| ||||||| ||| || || || || | ||| ||| ||| |||||| | || ||
Sbjct 1428 GTGCATGTGCAGCCCGATGCCGCCCGCGCTCTTGCTGATGGCCGCGCACTCCTTGAGCGT 1487
Query 111883 TCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTG 111942
| ||||| || | ||| ||| |||| |||| | | ||||| ||| || |||
Sbjct 1488 GTCGTAGATGCCCTCGATGCTGTCGCCCTTCATGGCCACCAAAAAGCAGCTGCTCAGCTG 1547
Query 111943 CGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGA 112002
||| | || || || || |||||||| || || | ||||| ||||| || |||
Sbjct 1548 CGGGCGGGGGGTGCCCGCGTTGAAGAGCGTCGGCGACGCGTGCGTGAACCAACGCTGGCT 1607
Query 112003 CATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGAC 112062
|| | || ||| ||||| | | || || | ||| ||| ||||||||| || | ||
Sbjct 1608 CAGCAGGTGGTACGTCTCGATCGCCGACTCCACGTCCTCCTTGTGGATGCCCATCGACAC 1667
Query 112063 CCGCATGAACATGTACTGTGG 112083
||||| | ||||| ||| ||
Sbjct 1668 GCGCATCAGCATGTGCTGCGG 1688
>seq81
Length=8194
Score = 150 bits (166), Expect = 2e-31
Identities = 303/441 (69%), Gaps = 15/441 (3%)
Strand=Plus/Plus
Query 182423 ACCCTTGGAAGCCTTGATGATTGGTGTCACCATAGAAACCACGAAACCC---AACTTGAG 182479
|||||||| ||| |||||||| || ||||| | |||| || ||| | ||||||
Sbjct 946 ACCCTTGGTAGCTTTGATGATGGGGGTCACAAACTCCACCAAAAATCCCGGCAGCTTGAG 1005
Query 182480 GAGACTGGGCCAGAAGTAGTGGATCATATTTAGGATGAGACCCTTGATGTGAGAACCATC 182539
|||||||| | ||| ||| | || | |||||||||||||||||| || || ||
Sbjct 1006 CAGACTGGGATAAAAGGTGTGCAGGTAGTTCATGATGAGACCCTTGATGTGGGAGCCGTC 1065
Query 182540 ATTATCGGCATCTGTCATAATCATAAGACGACCATAGCGAA--GTTCAGAAACATCTTG- 182596
| || ||| ||||| ||||| ||| | || ||||| | || | | | |||
Sbjct 1066 GTGGTCCTGATCCGTCATGATCATGAGATGGCCGTAGCGCAGCGTGCCG----CTGTTGT 1121
Query 182597 -GTAGTCTTTTCCTTGTTGAAGACCAAGGATCTTCTTGAGATCATTGAA-CTCCTGGTTT 182654
||| || || || || || || || ||||||| ||||| | ||||| ||| |||
Sbjct 1122 TGTACTCCTTGCCGTGCTGCAGGCCCAGGATCTGCTTGATGT-TTTGAATCTCGGCGTTG 1180
Query 182655 GATGTAAGCTGTGCCACCGAAGCGTCCCGAACATTCTTACATTTACCGCGAAGTGGGAAC 182714
| | ||| ||| ||||||| || || || || || ||||| || ||||||
Sbjct 1181 CCCGAGATCTGAGCCGCCGAAGCATCTCGCACGTTGAGGAGCTTGCCGCGGAGCGGGAAC 1240
Query 182715 ACACCGTAGTGATCACGACCAACGACAGAGAGACCCGCAACCGCGAGGGTTTTCGCCGAA 182774
|| |||||| |||| || || || || || || ||||| || || || || || |||||
Sbjct 1241 ACTCCGTAGCGATCGCGGCCCACCACCGACAGGCCCGCCACGGCCAGAGTCTTGGCCGAG 1300
Query 182775 TCACCCTCCGTGACAATGAGAGTACACTTTCCAGA-TTGTGCCGTACCCGCCTTGTTCGC 182833
|| ||||| |||| ||||| || |||| || ||| ||| ||||| | ||| ||
Sbjct 1301 TCTCCCTCGGTGAGGATGAGGGTGCACTCGGAGGAGTTGCGCC-CGCCCGCGTCGTTTGC 1359
Query 182834 GTCATCCAACTTGGGAATACC 182854
||| || | ||||||||| ||
Sbjct 1360 GTCGTCGAGCTTGGGAATGCC 1380
>seq60
Length=8765
Score = 118 bits (130), Expect = 1e-21
Identities = 302/455 (66%), Gaps = 16/455 (4%)
Strand=Plus/Minus
Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430
||||| ||||| |||||||| || ||||||||||| || | || ||| |||||
Sbjct 3039 TAGTCTCCGACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATC 2980
Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA--TGGGTGGCACCC----CAACTTGTTTGAGG 122484
|||| || ||||| | ||||| | | | || |||||| | || |||
Sbjct 2979 CAGTCGAACGGATTGGTGGCGTTGTAGAGCTTGGGCGCACCCAGGGCGAC------GAGC 2926
Query 122485 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGG 122544
|| || || |||| |||||||||||| | |||| || |||||| ||||||||
Sbjct 2925 AGCCGGTCGCTCACAAACTCAATGTACTGGCTCATCAGCTTGCCGTTCATGCCGATGAGA 2866
Query 122545 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 122604
| || || || || ||| ||| | ||||| || || || ||||| |||||
Sbjct 2865 TCCACCGGCAGGGCATCGCAGACAAACTCCTTCTCGATTTCCACGGCCTCGCCCACGAGC 2806
Query 122605 GCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGA--AGAGCTCCACGGCAA 122662
|| | | ||| | | | | | | | | | | | || ||||| |||||
Sbjct 2805 TGGTTCAGACGCTCGATGGCGAG-CGGGTGCTCGA-GCATGGAGTAGAGCAGGCAGGCAA 2748
Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722
| || ||| || |||||||| || || || || || || || ||| || || ||||
Sbjct 2747 AGTCGGTGTGCAGGCCCTCATCACGAGAGATGAGCTCGTTGGAAAAGGTGAGGCCGGGCA 2688
Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782
||||||| |||||||| | ||| || || | |||||| ||| |||||| || ||||
Sbjct 2687 TGAGACCGCGCTTCTTGACCCAGTAGATGGAGCAGAAGCTGCCGCTGAAGAAAATGCCCT 2628
Query 122783 CCACACACGCAAACGCAAAAAGGCGTTCGGCGAAG 122817
|||| ||||||||||| | ||||| || || |||
Sbjct 2627 CCACGCACGCAAACGCCACCAGGCGCTCCGCAAAG 2593
>seq2314
Length=1923
Score = 100 bits (110), Expect = 4e-16
Identities = 120/163 (74%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717
|||||| || ||| || ||||| || || ||||| || || || || ||| || ||
Sbjct 1682 GGCAAAGTCGGTGTGCAGGCCCTCGTCCCGAGAAATGAGCTCGTTGGAAAAGGTGAGCCC 1741
Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777
|||||||| || ||||| || | ||| || || |||||||| | ||| |||| |||
Sbjct 1742 CGGCATGAGGCCGCGCTTTTTGAGCCAGTAGATGGCGCAGAAGGCGCCGCTGAAGTGGAT 1801
Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAG 122820
|||||||| ||||||||||| | ||||| | || ||||||
Sbjct 1802 GCCCTCCACGCACGCAAACGCCAGCAGGCGCTGCGCAAAGGAG 1844
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627987519633600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |