Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq114 215 6e-51 seq81 150 2e-31 seq60 118 1e-21 seq2314 100 4e-16 >seq114 Length=7431 Score = 215 bits (238), Expect = 6e-51 Identities = 568/861 (66%), Gaps = 11/861 (1%) Strand=Plus/Plus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || || ||||| || || | ||||| || |||||||| || | |||||||| | Sbjct 832 GGCAGCGCGATCGAGGCGAGGTTGCACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACG 891 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || || || | |||| | ||| ||||| |||| |||| ||||| ||||| | Sbjct 892 ATCTCGGTGCACAGGTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCG 951 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||||| || |||||||| |||||||||||||| |||||||||||||| | | | ||| Sbjct 952 TTGCAGGCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGCCTCCAAAATG 1011 Query 111410 GCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTG---GCCCGTCCCTCCGCCTCGTAC 111466 || || ||| | || || | | || | ||| || || ||||| ||||||| Sbjct 1012 GCGAACC--ACAGCTGCTGCGCGCGC-ATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTAC 1068 Query 111467 TTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCT 111526 | |||||| | |||||||| ||| | |||| | || || || |||| || Sbjct 1069 CGCGCGTAGAGCGACTCAAACTCGGGGCCCCACACGTCCGCCAGGCCCGGCGCCTCGTTG 1128 Query 111527 GGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 111586 || ||||| || ||| || || | |||| || |||||||| || ||||| || ||| Sbjct 1129 GGGCAGAACAGGCTCCACTGCCCGTCCGCCTCGACGCGCTTCATAAACAGGTCGGGGATC 1188 Query 111587 CACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC 111646 ||||| | || || || | |||||||| || | || ||||| || | Sbjct 1189 CACAGCCCGTAGAACAGGTCGCGGGCGCGAGCCTCCTCCTTGCCGTGGTTCTTGCGCAGG 1248 Query 111647 TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTT 111706 || || | ||||| | ||||||||||| ||||| || || || || | | ||||| Sbjct 1249 TCCAGCCAGTCCATCACGTCCGCGTGCCAGGGCTCCAGGTACACCGCAAAGGCGCCCTTG 1308 Query 111707 CG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGA 111763 || | || | || | || || || || ||| |||| || ||||| ||||| || Sbjct 1309 CGCTTGCCGCCGCCCTGGTCCACGTACCGAGCCGTGTCGTTGAACACGCGCAGCATGGGC 1368 Query 111764 ATAATACCATCTGATTG-ACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATC 111822 | | || | || | | || || || ||||| || || |||| | | || Sbjct 1369 ACCACGCCGT-TGCTCGTGCCGTTGGTGCCCCGGATGTACGACCCCGTGGCGCGGATGTC 1427 Query 111823 ATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGT 111882 || ||||||| ||| || || || || | ||| ||| ||| |||||| | || || Sbjct 1428 GTGCATGTGCAGCCCGATGCCGCCCGCGCTCTTGCTGATGGCCGCGCACTCCTTGAGCGT 1487 Query 111883 TCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTG 111942 | ||||| || | ||| ||| |||| |||| | | ||||| ||| || ||| Sbjct 1488 GTCGTAGATGCCCTCGATGCTGTCGCCCTTCATGGCCACCAAAAAGCAGCTGCTCAGCTG 1547 Query 111943 CGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGA 112002 ||| | || || || || |||||||| || || | ||||| ||||| || ||| Sbjct 1548 CGGGCGGGGGGTGCCCGCGTTGAAGAGCGTCGGCGACGCGTGCGTGAACCAACGCTGGCT 1607 Query 112003 CATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGAC 112062 || | || ||| ||||| | | || || | ||| ||| ||||||||| || | || Sbjct 1608 CAGCAGGTGGTACGTCTCGATCGCCGACTCCACGTCCTCCTTGTGGATGCCCATCGACAC 1667 Query 112063 CCGCATGAACATGTACTGTGG 112083 ||||| | ||||| ||| || Sbjct 1668 GCGCATCAGCATGTGCTGCGG 1688 >seq81 Length=8194 Score = 150 bits (166), Expect = 2e-31 Identities = 303/441 (69%), Gaps = 15/441 (3%) Strand=Plus/Plus Query 182423 ACCCTTGGAAGCCTTGATGATTGGTGTCACCATAGAAACCACGAAACCC---AACTTGAG 182479 |||||||| ||| |||||||| || ||||| | |||| || ||| | |||||| Sbjct 946 ACCCTTGGTAGCTTTGATGATGGGGGTCACAAACTCCACCAAAAATCCCGGCAGCTTGAG 1005 Query 182480 GAGACTGGGCCAGAAGTAGTGGATCATATTTAGGATGAGACCCTTGATGTGAGAACCATC 182539 |||||||| | ||| ||| | || | |||||||||||||||||| || || || Sbjct 1006 CAGACTGGGATAAAAGGTGTGCAGGTAGTTCATGATGAGACCCTTGATGTGGGAGCCGTC 1065 Query 182540 ATTATCGGCATCTGTCATAATCATAAGACGACCATAGCGAA--GTTCAGAAACATCTTG- 182596 | || ||| ||||| ||||| ||| | || ||||| | || | | | ||| Sbjct 1066 GTGGTCCTGATCCGTCATGATCATGAGATGGCCGTAGCGCAGCGTGCCG----CTGTTGT 1121 Query 182597 -GTAGTCTTTTCCTTGTTGAAGACCAAGGATCTTCTTGAGATCATTGAA-CTCCTGGTTT 182654 ||| || || || || || || || ||||||| ||||| | ||||| ||| ||| Sbjct 1122 TGTACTCCTTGCCGTGCTGCAGGCCCAGGATCTGCTTGATGT-TTTGAATCTCGGCGTTG 1180 Query 182655 GATGTAAGCTGTGCCACCGAAGCGTCCCGAACATTCTTACATTTACCGCGAAGTGGGAAC 182714 | | ||| ||| ||||||| || || || || || ||||| || |||||| Sbjct 1181 CCCGAGATCTGAGCCGCCGAAGCATCTCGCACGTTGAGGAGCTTGCCGCGGAGCGGGAAC 1240 Query 182715 ACACCGTAGTGATCACGACCAACGACAGAGAGACCCGCAACCGCGAGGGTTTTCGCCGAA 182774 || |||||| |||| || || || || || || ||||| || || || || || ||||| Sbjct 1241 ACTCCGTAGCGATCGCGGCCCACCACCGACAGGCCCGCCACGGCCAGAGTCTTGGCCGAG 1300 Query 182775 TCACCCTCCGTGACAATGAGAGTACACTTTCCAGA-TTGTGCCGTACCCGCCTTGTTCGC 182833 || ||||| |||| ||||| || |||| || ||| ||| ||||| | ||| || Sbjct 1301 TCTCCCTCGGTGAGGATGAGGGTGCACTCGGAGGAGTTGCGCC-CGCCCGCGTCGTTTGC 1359 Query 182834 GTCATCCAACTTGGGAATACC 182854 ||| || | ||||||||| || Sbjct 1360 GTCGTCGAGCTTGGGAATGCC 1380 >seq60 Length=8765 Score = 118 bits (130), Expect = 1e-21 Identities = 302/455 (66%), Gaps = 16/455 (4%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| ||||| |||||||| || ||||||||||| || | || ||| ||||| Sbjct 3039 TAGTCTCCGACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATC 2980 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA--TGGGTGGCACCC----CAACTTGTTTGAGG 122484 |||| || ||||| | ||||| | | | || |||||| | || ||| Sbjct 2979 CAGTCGAACGGATTGGTGGCGTTGTAGAGCTTGGGCGCACCCAGGGCGAC------GAGC 2926 Query 122485 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGG 122544 || || || |||| |||||||||||| | |||| || |||||| |||||||| Sbjct 2925 AGCCGGTCGCTCACAAACTCAATGTACTGGCTCATCAGCTTGCCGTTCATGCCGATGAGA 2866 Query 122545 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 122604 | || || || || ||| ||| | ||||| || || || ||||| ||||| Sbjct 2865 TCCACCGGCAGGGCATCGCAGACAAACTCCTTCTCGATTTCCACGGCCTCGCCCACGAGC 2806 Query 122605 GCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGA--AGAGCTCCACGGCAA 122662 || | | ||| | | | | | | | | | | | || ||||| ||||| Sbjct 2805 TGGTTCAGACGCTCGATGGCGAG-CGGGTGCTCGA-GCATGGAGTAGAGCAGGCAGGCAA 2748 Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722 | || ||| || |||||||| || || || || || || || ||| || || |||| Sbjct 2747 AGTCGGTGTGCAGGCCCTCATCACGAGAGATGAGCTCGTTGGAAAAGGTGAGGCCGGGCA 2688 Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782 ||||||| |||||||| | ||| || || | |||||| ||| |||||| || |||| Sbjct 2687 TGAGACCGCGCTTCTTGACCCAGTAGATGGAGCAGAAGCTGCCGCTGAAGAAAATGCCCT 2628 Query 122783 CCACACACGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 |||| ||||||||||| | ||||| || || ||| Sbjct 2627 CCACGCACGCAAACGCCACCAGGCGCTCCGCAAAG 2593 >seq2314 Length=1923 Score = 100 bits (110), Expect = 4e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| || ||||| || || ||||| || || || || ||| || || Sbjct 1682 GGCAAAGTCGGTGTGCAGGCCCTCGTCCCGAGAAATGAGCTCGTTGGAAAAGGTGAGCCC 1741 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 |||||||| || ||||| || | ||| || || |||||||| | ||| |||| ||| Sbjct 1742 CGGCATGAGGCCGCGCTTTTTGAGCCAGTAGATGGCGCAGAAGGCGCCGCTGAAGTGGAT 1801 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAG 122820 |||||||| ||||||||||| | ||||| | || |||||| Sbjct 1802 GCCCTCCACGCACGCAAACGCCAGCAGGCGCTGCGCAAAGGAG 1844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627987519633600