Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq114 259 6e-64 seq81 159 4e-34 seq60 104 3e-17 >seq114 Length=7431 Score = 259 bits (286), Expect = 6e-64 Identities = 570/852 (67%), Gaps = 7/852 (1%) Strand=Plus/Plus Query 118704 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 118763 || || ||||| || || || || ||||| | ||||| || | |||||||| | Sbjct 832 GGCAGCGCGATCGAGGCGAGGTTGCACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACG 891 Query 118764 ATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 118823 || || ||||||| ||| | ||| || ||||||| ||||| || || ||| | | Sbjct 892 ATCTCGGTGCACAGGTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCG 951 Query 118824 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 118883 || || || |||||||| |||||||| ||||| ||||||||||| || | || | ||| Sbjct 952 TTGCAGGCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGCCTCCAAAATG 1011 Query 118884 GCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGC--CCCTCTTCCTCGTACT 118941 || ||| || | || || || || | | | || ||| ||||| ||||||| Sbjct 1012 GCGAACCA--CAGCTGCTGCGCGCGCATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACC 1069 Query 118942 TTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTG 119001 | |||||| | |||||||| ||| | || | || || || |||| | | Sbjct 1070 GCGCGTAGAGCGACTCAAACTCGGGGCCCCACACGTCCGCCAGGCCCGGCGCCTCGTTGG 1129 Query 119002 GGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCC 119061 ||||||| || ||| || || || |||| || |||||||| || ||||| ||||||| Sbjct 1130 GGCAGAACAGGCTCCACTGCCCGTCCGCCTCGACGCGCTTCATAAACAGGTCGGGGATCC 1189 Query 119062 AGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACT 119121 | ||| | |||| || || || |||||| || || | || || || |||| | Sbjct 1190 ACAGCCCGTAGAACAGGTCGCGGGCGCGAGCCTCCTCCTTGCCGTGGTTCTTGCGCAGGT 1249 Query 119122 CCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTAC 119181 ||| ||||||| | ||||||||||| || |||||||||||||| | | ||||| | Sbjct 1250 CCAGCCAGTCCATCACGTCCGCGTGCCAGGGCTCCAGGTACACCGCAAAGGCGCCCTTGC 1309 Query 119182 G---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAA 119238 | | || |||||| || |||| || ||| |||| || || || ||||| || | Sbjct 1310 GCTTGCCGCCGCCCTGGTCCACGTACCGAGCCGTGTCGTTGAACACGCGCAGCATGGGCA 1369 Query 119239 TGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGT 119298 | || | | ||| || || ||||| || ||| |||| | || |||| Sbjct 1370 CCACGCCGTTGCTCGTGCCGTTGGTGCCCCGGATGTACGACCCCGTGGCGCGGATGTCGT 1429 Query 119299 GGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGC 119358 | ||||||| || || || || || | ||| ||| |||||||||| |||| || Sbjct 1430 GCATGTGCAGCCCGATGCCGCCCGCGCTCTTGCTGATGGCCGCGCACTCCTTGAGCGTGT 1489 Query 119359 CGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAG 119418 ||||||| || ||||| ||| ||||| | || | | |||||||| || || | Sbjct 1490 CGTAGATGCCCTCGATGCTGTCGCCCTTCATGGCCACCAAAAAGCAGCTGCTCAGCTGCG 1549 Query 119419 GCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACA 119478 | | ||| || || ||||||||||| || || | |||||| ||||| || ||| || Sbjct 1550 GGCGGGGGGTGCCCGCGTTGAAGAGCGTCGGCGACGCGTGCGTGAACCAACGCTGGCTCA 1609 Query 119479 TCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCC 119538 | || ||| ||||| | | | | ||| ||| ||| || || ||||| || | Sbjct 1610 GCAGGTGGTACGTCTCGATCGCCGACTCCACGTCCTCCTTGTGGATGCCCATCGACACGC 1669 Query 119539 GCATAAACATGT 119550 |||| | ||||| Sbjct 1670 GCATCAGCATGT 1681 >seq81 Length=8194 Score = 159 bits (176), Expect = 4e-34 Identities = 301/437 (69%), Gaps = 7/437 (2%) Strand=Plus/Plus Query 179682 ACCCTTGGAAGCCTTGATGATTGGTGTCACCATTGAGACCACAAACCCC---AACTTGAG 179738 |||||||| ||| |||||||| || ||||| | |||| ||| ||| | |||||| Sbjct 946 ACCCTTGGTAGCTTTGATGATGGGGGTCACAAACTCCACCAAAAATCCCGGCAGCTTGAG 1005 Query 179739 GAGCGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGAACCATC 179798 || || | ||| ||| | || | |||||||||||| ||||| || || || Sbjct 1006 CAGACTGGGATAAAAGGTGTGCAGGTAGTTCATGATGAGACCCTTGATGTGGGAGCCGTC 1065 Query 179799 GTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAGCTCGGAAACATCTTGATA 179858 || ||| ||||||||| ||||| || | || ||||| ||| | | | || Sbjct 1066 GTGGTCCTGATCCGTCATGATCATGAGATGGCCGTAGCGCAGCGTGCCGCTGTTGTTGTA 1125 Query 179859 ATCCTTACCTTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAA-CTCTTGGTTTGATG 179917 ||||| || || || || |||| ||||| ||||| | ||||| ||| ||| | Sbjct 1126 CTCCTTGCCGTGCTGCAGGCCCAGGATCTGCTTGATGTT-TTGAATCTCGGCGTTGCCCG 1184 Query 179918 TGAGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACAC 179977 || || ||| | ||||||||||| || || ||| || ||||| |||||||| | Sbjct 1185 AGATCTGAGCCGCCGAAGCATCTCGCACGTTGAGGAGCTTGCCGCGGAGCGGGAACACTC 1244 Query 179978 CGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCAC 180037 ||||| |||| || || ||||| || || || || || || || ||||| || || || | Sbjct 1245 CGTAGCGATCGCGGCCCACCACCGACAGGCCCGCCACGGCCAGAGTCTTGGCCGAGTCTC 1304 Query 180038 CCTCCGTCACGATGAGCGTACACTTTCCAGA-TTGTGCCGTCCCTGCCTTGTTCGCGTCG 180096 |||| || | |||||| || |||| || ||| ||| ||| || | ||| |||||| Sbjct 1305 CCTCGGTGAGGATGAGGGTGCACTCGGAGGAGTTGCGCCCGCCC-GCGTCGTTTGCGTCG 1363 Query 180097 TCCAACTTGGGAATACC 180113 || | ||||||||| || Sbjct 1364 TCGAGCTTGGGAATGCC 1380 Score = 95.1 bits (104), Expect = 1e-14 Identities = 203/302 (67%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 179038 GTGAAGATGTACCTCGTTTGAGACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGA 179097 ||||||||||| | || | || || ||||| ||| || ||||| ||||| ||| Sbjct 311 GTGAAGATGTAGCGCGCGCTGGCGGCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTGA 370 Query 179098 CCACATGGCTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACA 179157 || ||| | ||| |||| ||||| || |||| |||| | ||| | || Sbjct 371 CCCTGCGGCACCAGGTAGTTGACGTTGTTGGAGCCCACAAAGTCCTGGGCTAGGCCCACG 430 Query 179158 ATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAAGCCGACTTGTCCGCCACATATGCC 179217 || || || ||||||| || ||||||||||| || ||| |||||||| || || Sbjct 431 ATGGTGCCCATGAGGGAGGTCTCGCCGTGATGGTACGCGCTCTTCTCCGCCACGTAGCCC 490 Query 179218 GCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATCACC 179277 |||| |||||| ||||| || || | ||| ||||| | |||||| ||| ||| | | Sbjct 491 GCCAGCTGCGCGACCTTGATGTCCTTCTTCAGGTTGCGCTTGAAGCAGGCAAACAGGATC 550 Query 179278 TTTCTTTGTGAAGGCTTGAGGCCGT---CGGCCATGTGCGCGATGGAACGCTTCAAGTCT 179334 || | || || ||||| |||| |||| || | |||||| |||| || ||| Sbjct 551 TTGCGCTGCCCGGGTTTGAGCCCGTCCACGGCGCTG---GGGATGGAGCGCTCCAGGTCG 607 Query 179335 GC 179336 || Sbjct 608 GC 609 >seq60 Length=8765 Score = 104 bits (114), Expect = 3e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| || ||||| ||||| |||||||| || || || ||| || || Sbjct 2752 GGCAAAGTCGGTGTGCAGGCCCTCATCACGAGAGATGAGCTCGTTGGAAAAGGTGAGGCC 2693 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||||||||| |||||||| | |||| | || | || || ||| |||||| || Sbjct 2692 GGGCATGAGACCGCGCTTCTTGACCCAGTAGATGGAGCAGAAGCTGCCGCTGAAGAAAAT 2633 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 |||||||| ||||| ||||| | || ||||| |||||| Sbjct 2632 GCCCTCCACGCACGCAAACGCCACCAGGCGCTCCGCAAAG 2593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618391399326960