Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq114 259 6e-64
seq81 159 4e-34
seq60 104 3e-17
>seq114
Length=7431
Score = 259 bits (286), Expect = 6e-64
Identities = 570/852 (67%), Gaps = 7/852 (1%)
Strand=Plus/Plus
Query 118704 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 118763
|| || ||||| || || || || ||||| | ||||| || | |||||||| |
Sbjct 832 GGCAGCGCGATCGAGGCGAGGTTGCACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACG 891
Query 118764 ATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 118823
|| || ||||||| ||| | ||| || ||||||| ||||| || || ||| | |
Sbjct 892 ATCTCGGTGCACAGGTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCG 951
Query 118824 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 118883
|| || || |||||||| |||||||| ||||| ||||||||||| || | || | |||
Sbjct 952 TTGCAGGCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGCCTCCAAAATG 1011
Query 118884 GCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGC--CCCTCTTCCTCGTACT 118941
|| ||| || | || || || || | | | || ||| ||||| |||||||
Sbjct 1012 GCGAACCA--CAGCTGCTGCGCGCGCATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACC 1069
Query 118942 TTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTG 119001
| |||||| | |||||||| ||| | || | || || || |||| | |
Sbjct 1070 GCGCGTAGAGCGACTCAAACTCGGGGCCCCACACGTCCGCCAGGCCCGGCGCCTCGTTGG 1129
Query 119002 GGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCC 119061
||||||| || ||| || || || |||| || |||||||| || ||||| |||||||
Sbjct 1130 GGCAGAACAGGCTCCACTGCCCGTCCGCCTCGACGCGCTTCATAAACAGGTCGGGGATCC 1189
Query 119062 AGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACT 119121
| ||| | |||| || || || |||||| || || | || || || |||| |
Sbjct 1190 ACAGCCCGTAGAACAGGTCGCGGGCGCGAGCCTCCTCCTTGCCGTGGTTCTTGCGCAGGT 1249
Query 119122 CCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTAC 119181
||| ||||||| | ||||||||||| || |||||||||||||| | | ||||| |
Sbjct 1250 CCAGCCAGTCCATCACGTCCGCGTGCCAGGGCTCCAGGTACACCGCAAAGGCGCCCTTGC 1309
Query 119182 G---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAA 119238
| | || |||||| || |||| || ||| |||| || || || ||||| || |
Sbjct 1310 GCTTGCCGCCGCCCTGGTCCACGTACCGAGCCGTGTCGTTGAACACGCGCAGCATGGGCA 1369
Query 119239 TGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGT 119298
| || | | ||| || || ||||| || ||| |||| | || ||||
Sbjct 1370 CCACGCCGTTGCTCGTGCCGTTGGTGCCCCGGATGTACGACCCCGTGGCGCGGATGTCGT 1429
Query 119299 GGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGC 119358
| ||||||| || || || || || | ||| ||| |||||||||| |||| ||
Sbjct 1430 GCATGTGCAGCCCGATGCCGCCCGCGCTCTTGCTGATGGCCGCGCACTCCTTGAGCGTGT 1489
Query 119359 CGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAG 119418
||||||| || ||||| ||| ||||| | || | | |||||||| || || |
Sbjct 1490 CGTAGATGCCCTCGATGCTGTCGCCCTTCATGGCCACCAAAAAGCAGCTGCTCAGCTGCG 1549
Query 119419 GCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACA 119478
| | ||| || || ||||||||||| || || | |||||| ||||| || ||| ||
Sbjct 1550 GGCGGGGGGTGCCCGCGTTGAAGAGCGTCGGCGACGCGTGCGTGAACCAACGCTGGCTCA 1609
Query 119479 TCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCC 119538
| || ||| ||||| | | | | ||| ||| ||| || || ||||| || |
Sbjct 1610 GCAGGTGGTACGTCTCGATCGCCGACTCCACGTCCTCCTTGTGGATGCCCATCGACACGC 1669
Query 119539 GCATAAACATGT 119550
|||| | |||||
Sbjct 1670 GCATCAGCATGT 1681
>seq81
Length=8194
Score = 159 bits (176), Expect = 4e-34
Identities = 301/437 (69%), Gaps = 7/437 (2%)
Strand=Plus/Plus
Query 179682 ACCCTTGGAAGCCTTGATGATTGGTGTCACCATTGAGACCACAAACCCC---AACTTGAG 179738
|||||||| ||| |||||||| || ||||| | |||| ||| ||| | ||||||
Sbjct 946 ACCCTTGGTAGCTTTGATGATGGGGGTCACAAACTCCACCAAAAATCCCGGCAGCTTGAG 1005
Query 179739 GAGCGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGAACCATC 179798
|| || | ||| ||| | || | |||||||||||| ||||| || || ||
Sbjct 1006 CAGACTGGGATAAAAGGTGTGCAGGTAGTTCATGATGAGACCCTTGATGTGGGAGCCGTC 1065
Query 179799 GTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAGCTCGGAAACATCTTGATA 179858
|| ||| ||||||||| ||||| || | || ||||| ||| | | | ||
Sbjct 1066 GTGGTCCTGATCCGTCATGATCATGAGATGGCCGTAGCGCAGCGTGCCGCTGTTGTTGTA 1125
Query 179859 ATCCTTACCTTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAA-CTCTTGGTTTGATG 179917
||||| || || || || |||| ||||| ||||| | ||||| ||| ||| |
Sbjct 1126 CTCCTTGCCGTGCTGCAGGCCCAGGATCTGCTTGATGTT-TTGAATCTCGGCGTTGCCCG 1184
Query 179918 TGAGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACAC 179977
|| || ||| | ||||||||||| || || ||| || ||||| |||||||| |
Sbjct 1185 AGATCTGAGCCGCCGAAGCATCTCGCACGTTGAGGAGCTTGCCGCGGAGCGGGAACACTC 1244
Query 179978 CGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCAC 180037
||||| |||| || || ||||| || || || || || || || ||||| || || || |
Sbjct 1245 CGTAGCGATCGCGGCCCACCACCGACAGGCCCGCCACGGCCAGAGTCTTGGCCGAGTCTC 1304
Query 180038 CCTCCGTCACGATGAGCGTACACTTTCCAGA-TTGTGCCGTCCCTGCCTTGTTCGCGTCG 180096
|||| || | |||||| || |||| || ||| ||| ||| || | ||| ||||||
Sbjct 1305 CCTCGGTGAGGATGAGGGTGCACTCGGAGGAGTTGCGCCCGCCC-GCGTCGTTTGCGTCG 1363
Query 180097 TCCAACTTGGGAATACC 180113
|| | ||||||||| ||
Sbjct 1364 TCGAGCTTGGGAATGCC 1380
Score = 95.1 bits (104), Expect = 1e-14
Identities = 203/302 (67%), Gaps = 6/302 (2%)
Strand=Plus/Plus
Query 179038 GTGAAGATGTACCTCGTTTGAGACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGA 179097
||||||||||| | || | || || ||||| ||| || ||||| ||||| |||
Sbjct 311 GTGAAGATGTAGCGCGCGCTGGCGGCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTGA 370
Query 179098 CCACATGGCTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACA 179157
|| ||| | ||| |||| ||||| || |||| |||| | ||| | ||
Sbjct 371 CCCTGCGGCACCAGGTAGTTGACGTTGTTGGAGCCCACAAAGTCCTGGGCTAGGCCCACG 430
Query 179158 ATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAAGCCGACTTGTCCGCCACATATGCC 179217
|| || || ||||||| || ||||||||||| || ||| |||||||| || ||
Sbjct 431 ATGGTGCCCATGAGGGAGGTCTCGCCGTGATGGTACGCGCTCTTCTCCGCCACGTAGCCC 490
Query 179218 GCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATCACC 179277
|||| |||||| ||||| || || | ||| ||||| | |||||| ||| ||| | |
Sbjct 491 GCCAGCTGCGCGACCTTGATGTCCTTCTTCAGGTTGCGCTTGAAGCAGGCAAACAGGATC 550
Query 179278 TTTCTTTGTGAAGGCTTGAGGCCGT---CGGCCATGTGCGCGATGGAACGCTTCAAGTCT 179334
|| | || || ||||| |||| |||| || | |||||| |||| || |||
Sbjct 551 TTGCGCTGCCCGGGTTTGAGCCCGTCCACGGCGCTG---GGGATGGAGCGCTCCAGGTCG 607
Query 179335 GC 179336
||
Sbjct 608 GC 609
>seq60
Length=8765
Score = 104 bits (114), Expect = 3e-17
Identities = 119/160 (74%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074
|||||| || ||| || ||||| ||||| |||||||| || || || ||| || ||
Sbjct 2752 GGCAAAGTCGGTGTGCAGGCCCTCATCACGAGAGATGAGCTCGTTGGAAAAGGTGAGGCC 2693
Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134
||||||||||| |||||||| | |||| | || | || || ||| |||||| ||
Sbjct 2692 GGGCATGAGACCGCGCTTCTTGACCCAGTAGATGGAGCAGAAGCTGCCGCTGAAGAAAAT 2633
Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174
|||||||| ||||| ||||| | || ||||| ||||||
Sbjct 2632 GCCCTCCACGCACGCAAACGCCACCAGGCGCTCCGCAAAG 2593
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618391399326960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |