Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq114 185 1e-41
seq81 154 2e-32
seq60 129 7e-25
seq2314 123 3e-23
>seq114
Length=7431
Score = 185 bits (204), Expect = 1e-41
Identities = 560/859 (65%), Gaps = 7/859 (1%)
Strand=Plus/Minus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
|| ||| ||||| | ||||||||| | || || || || ||| ||| | || || |
Sbjct 1688 CCGCAGCACATGCTGATGCGCGTGTCGATGGGCATCCACAAGGAGGACGTGGAGTCGGCG 1629
Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341
| ||||| ||| || | || ||| || ||||| ||||| | || || ||||||
Sbjct 1628 ATCGAGACGTACCACCTGCTGAGCCAGCGTTGGTTCACGCACGCGTCGCCGACGCTCTTC 1569
Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401
|| || || || || | || || || ||| ||||| | | |||| |||| |||
Sbjct 1568 AACGCGGGCACCCCCCGCCCGCAGCTGAGCAGCTGCTTTTTGGTGGCCATGAAGGGCGAC 1509
Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461
||| | || ||||| | || || | |||||| ||| ||| ||| | || ||
Sbjct 1508 AGCATCGAGGGCATCTACGACACGCTCAAGGAGTGCGCGGCCATCAGCAAGAGCGCGGGC 1449
Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAAT 104521
|| || ||| ||||||| || || | | |||| || || ||||| || ||
Sbjct 1448 GGCATCGGGCTGCACATGCACGACATCCGCGCCACGGGGTCGTACATCCGGGGCACCAAC 1389
Query 104522 GGT-CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580
|| | | || | || | | || ||||| ||||| || |||| ||| || || || ||
Sbjct 1388 GGCACGAGCA-ACGGCGTGGTGCCCATGCTGCGCGTGTTCAACGACACGGCTCGGTACGT 1330
Query 104581 AAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGC 104637
| || | || | || ||||| | | || || || || ||||| ||||||||
Sbjct 1329 GGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCGGTGTACCTGGAGCCCTGGCACGC 1270
Query 104638 GGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCG 104697
||| | ||||| | || || |||| ||||| || | |||||||| || |||
Sbjct 1269 GGACGTGATGGACTGGCTGGACCTGCGCAAGAACCACGGCAAGGAGGAGGCTCGCGCCCG 1210
Query 104698 CGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGG 104757
||| || |||| || || ||||| || || || || |||||| | || |||| | ||
Sbjct 1209 CGACCTGTTCTACGGGCTGTGGATCCCCGACCTGTTTATGAAGCGCGTCGAGGCGGACGG 1150
Query 104758 CAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGA 104817
| ||| || || || || || |||| || || || | || | ||| ||
Sbjct 1149 GCAGTGGAGCCTGTTCTGCCCCAACGAGGCGCCGGGCCTGGCGGACGTGTGGGGCCCCGA 1090
Query 104818 GTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGC 104877
|||||| | || ||| | ||||||| || || || ||| |||| ||| ||
Sbjct 1089 GTTTGAGTCGCTCTACGCGCGGTACGAGCGCGAGGGCCGCGCGCGCAAGACGATGCGCGC 1030
Query 104878 TGCCG-ATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGC 104936
|| | | ||||| || ||| | || | || || ||||| || || || |||||||
Sbjct 1029 -GCAGCAGCTGTGGTTCGCCATTTTGGAGGCGCAGACGGAGACGGGCACGCCCTACATGC 971
Query 104937 TTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTT 104996
| ||||| |||||||| ||| ||||| || || |||| |||| ||||||| |
Sbjct 970 TGTACAAGGACGCCTGCAACGCCAAGAGCAACCAGCAGAACCTGGGCACGATCAAGTGCA 911
Query 104997 CCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACC 105056
||| || || || || ||| | || | || | | || |||||||| ||||| ||||
Sbjct 910 GCAACCTGTGCACCGAGATCGTCGAGTACACGGCCCCCGACGAGACGGCCGTGTGCAACC 851
Query 105057 TCGCATCAATCGCTCTCCC 105075
|||| || ||||| || ||
Sbjct 850 TCGCCTCGATCGCGCTGCC 832
>seq81
Length=8194
Score = 154 bits (170), Expect = 2e-32
Identities = 300/437 (69%), Gaps = 7/437 (2%)
Strand=Plus/Plus
Query 169075 ACCTTTGGATGCCTTGATAATTGGTGTCACCATAGACACAACAAAACCC---AACTTGAG 169131
||| |||| || ||||| || || ||||| | ||| | ||| ||| | ||||||
Sbjct 946 ACCCTTGGTAGCTTTGATGATGGGGGTCACAAACTCCACCAAAAATCCCGGCAGCTTGAG 1005
Query 169132 AAGACTTGGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTC 169191
||||| || | ||| ||| | || | |||||||||||||||||||| |||||
Sbjct 1006 CAGACTGGGATAAAAGGTGTGCAGGTAGTTCATGATGAGACCCTTGATGTGGGAGCCGTC 1065
Query 169192 GTTATCGGCATCCGTCATGATCATGAGACGACCATACCGAAGCTCGGAAACATCTTGATA 169251
|| || ||||||||||||||||||| | || || || ||| | | | ||
Sbjct 1066 GTGGTCCTGATCCGTCATGATCATGAGATGGCCGTAGCGCAGCGTGCCGCTGTTGTTGTA 1125
Query 169252 GTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAA-CTCTTGGTTTGATG 169310
||||| || || || || |||| ||||| ||||| | ||||| ||| ||| |
Sbjct 1126 CTCCTTGCCGTGCTGCAGGCCCAGGATCTGCTTGATGT-TTTGAATCTCGGCGTTGCCCG 1184
Query 169311 TGAGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACAC 169370
|| ||| | | || ||||| || || || ||| || || || ||||| || |
Sbjct 1185 AGATCTGAGCCGCCGAAGCATCTCGCACGTTGAGGAGCTTGCCGCGGAGCGGGAACACTC 1244
Query 169371 CGTAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCAC 169430
||||| |||| || || || || || || ||||| || || |||||||| |||||||| |
Sbjct 1245 CGTAGCGATCGCGGCCCACCACCGACAGGCCCGCCACGGCCAGAGTCTTGGCCGAGTCTC 1304
Query 169431 CCTCGGTGACGATGAGCGTACATTTTCCAGA-TTGTGCCGTACCCGCCTTGTTCGCATCA 169489
||||||||| |||||| || || | || ||| ||| ||||| | ||| || ||
Sbjct 1305 CCTCGGTGAGGATGAGGGTGCACTCGGAGGAGTTGCGCC-CGCCCGCGTCGTTTGCGTCG 1363
Query 169490 TCCAATTTGGGAATACC 169506
|| | |||||||| ||
Sbjct 1364 TCGAGCTTGGGAATGCC 1380
Score = 87.8 bits (96), Expect = 2e-12
Identities = 165/243 (68%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 168455 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 168514
|| ||||| || ||| || ||||| ||||||||||| |||| | || ||||
Sbjct 335 GCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTGACCCTGCGGCACCAGGTAGTTGACG 394
Query 168515 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCA 168574
||||| || |||| |||| | || | || || ||| || ||| ||| ||
Sbjct 395 TTGTTGGAGCCCACAAAGTCCTGGGCTAGGCCCACGATGGTGCCCATGAGGGAGGTCTCG 454
Query 168575 CCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCA 168634
||||| |||||||| |||||||| || || | |||||| |||||| || || || ||
Sbjct 455 CCGTGATGGTACGCGCTCTTCTCCGCCACGTAGCCCGCCAGCTGCGCGACCTTGATGTCC 514
Query 168635 TCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCA 168694
| ||| || || | |||||| || ||| | |||||| ||| || ||||| ||
Sbjct 515 TTCTTCAGGTTGCGCTTGAAGCAGGCAAACAGGATCTTGCGCTGCCCGGGTTTGAGCCCG 574
Query 168695 TCC 168697
|||
Sbjct 575 TCC 577
>seq60
Length=8765
Score = 129 bits (142), Expect = 7e-25
Identities = 124/159 (78%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856
|||||| ||||| || | || |||||||| || ||||| || |||||| || |||
Sbjct 2593 CTTTGCGGAGCGCCTGGTGGCGTTTGCGTGCGTGGAGGGCATTTTCTTCAGCGGCAGCTT 2652
Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916
|||| | || || ||| |||||||||| ||||||||||| || ||| ||| ||||||||
Sbjct 2653 CTGCTCCATCTACTGGGTCAAGAAGCGCGGTCTCATGCCCGGCCTCACCTTTTCCAACGA 2712
Query 94917 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
||| ||||||||||| ||||| || ||| || |||||
Sbjct 2713 GCTCATCTCTCGTGATGAGGGCCTGCACACCGACTTTGC 2751
>seq2314
Length=1923
Score = 123 bits (136), Expect = 3e-23
Identities = 124/161 (77%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854
|||||||| |||| || | || |||||||| || ||||| ||| |||| || ||
Sbjct 1843 TCCTTTGCGCAGCGCCTGCTGGCGTTTGCGTGCGTGGAGGGCATCCACTTCAGCGGCGCC 1784
Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914
|||||||| || || |||||||| ||||| || |||||||| || ||| ||| ||||||
Sbjct 1783 TTCTGCGCCATCTACTGGCTCAAAAAGCGCGGCCTCATGCCGGGGCTCACCTTTTCCAAC 1724
Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
||||| || ||||| |||||||| || ||| || |||||
Sbjct 1723 GAGCTCATTTCTCGGGACGAGGGCCTGCACACCGACTTTGC 1683
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583219490553840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |