Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq114 185 1e-41 seq81 154 2e-32 seq60 129 7e-25 seq2314 123 3e-23 >seq114 Length=7431 Score = 185 bits (204), Expect = 1e-41 Identities = 560/859 (65%), Gaps = 7/859 (1%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| | ||||||||| | || || || || ||| ||| | || || | Sbjct 1688 CCGCAGCACATGCTGATGCGCGTGTCGATGGGCATCCACAAGGAGGACGTGGAGTCGGCG 1629 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | ||||| ||| || | || ||| || ||||| ||||| | || || |||||| Sbjct 1628 ATCGAGACGTACCACCTGCTGAGCCAGCGTTGGTTCACGCACGCGTCGCCGACGCTCTTC 1569 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || || || || || | || || || ||| ||||| | | |||| |||| ||| Sbjct 1568 AACGCGGGCACCCCCCGCCCGCAGCTGAGCAGCTGCTTTTTGGTGGCCATGAAGGGCGAC 1509 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 ||| | || ||||| | || || | |||||| ||| ||| ||| | || || Sbjct 1508 AGCATCGAGGGCATCTACGACACGCTCAAGGAGTGCGCGGCCATCAGCAAGAGCGCGGGC 1449 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAAT 104521 || || ||| ||||||| || || | | |||| || || ||||| || || Sbjct 1448 GGCATCGGGCTGCACATGCACGACATCCGCGCCACGGGGTCGTACATCCGGGGCACCAAC 1389 Query 104522 GGT-CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 || | | || | || | | || ||||| ||||| || |||| ||| || || || || Sbjct 1388 GGCACGAGCA-ACGGCGTGGTGCCCATGCTGCGCGTGTTCAACGACACGGCTCGGTACGT 1330 Query 104581 AAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGC 104637 | || | || | || ||||| | | || || || || ||||| |||||||| Sbjct 1329 GGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCGGTGTACCTGGAGCCCTGGCACGC 1270 Query 104638 GGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCG 104697 ||| | ||||| | || || |||| ||||| || | |||||||| || ||| Sbjct 1269 GGACGTGATGGACTGGCTGGACCTGCGCAAGAACCACGGCAAGGAGGAGGCTCGCGCCCG 1210 Query 104698 CGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGG 104757 ||| || |||| || || ||||| || || || || |||||| | || |||| | || Sbjct 1209 CGACCTGTTCTACGGGCTGTGGATCCCCGACCTGTTTATGAAGCGCGTCGAGGCGGACGG 1150 Query 104758 CAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGA 104817 | ||| || || || || || |||| || || || | || | ||| || Sbjct 1149 GCAGTGGAGCCTGTTCTGCCCCAACGAGGCGCCGGGCCTGGCGGACGTGTGGGGCCCCGA 1090 Query 104818 GTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGC 104877 |||||| | || ||| | ||||||| || || || ||| |||| ||| || Sbjct 1089 GTTTGAGTCGCTCTACGCGCGGTACGAGCGCGAGGGCCGCGCGCGCAAGACGATGCGCGC 1030 Query 104878 TGCCG-ATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGC 104936 || | | ||||| || ||| | || | || || ||||| || || || ||||||| Sbjct 1029 -GCAGCAGCTGTGGTTCGCCATTTTGGAGGCGCAGACGGAGACGGGCACGCCCTACATGC 971 Query 104937 TTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTT 104996 | ||||| |||||||| ||| ||||| || || |||| |||| ||||||| | Sbjct 970 TGTACAAGGACGCCTGCAACGCCAAGAGCAACCAGCAGAACCTGGGCACGATCAAGTGCA 911 Query 104997 CCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACC 105056 ||| || || || || ||| | || | || | | || |||||||| ||||| |||| Sbjct 910 GCAACCTGTGCACCGAGATCGTCGAGTACACGGCCCCCGACGAGACGGCCGTGTGCAACC 851 Query 105057 TCGCATCAATCGCTCTCCC 105075 |||| || ||||| || || Sbjct 850 TCGCCTCGATCGCGCTGCC 832 >seq81 Length=8194 Score = 154 bits (170), Expect = 2e-32 Identities = 300/437 (69%), Gaps = 7/437 (2%) Strand=Plus/Plus Query 169075 ACCTTTGGATGCCTTGATAATTGGTGTCACCATAGACACAACAAAACCC---AACTTGAG 169131 ||| |||| || ||||| || || ||||| | ||| | ||| ||| | |||||| Sbjct 946 ACCCTTGGTAGCTTTGATGATGGGGGTCACAAACTCCACCAAAAATCCCGGCAGCTTGAG 1005 Query 169132 AAGACTTGGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTC 169191 ||||| || | ||| ||| | || | |||||||||||||||||||| ||||| Sbjct 1006 CAGACTGGGATAAAAGGTGTGCAGGTAGTTCATGATGAGACCCTTGATGTGGGAGCCGTC 1065 Query 169192 GTTATCGGCATCCGTCATGATCATGAGACGACCATACCGAAGCTCGGAAACATCTTGATA 169251 || || ||||||||||||||||||| | || || || ||| | | | || Sbjct 1066 GTGGTCCTGATCCGTCATGATCATGAGATGGCCGTAGCGCAGCGTGCCGCTGTTGTTGTA 1125 Query 169252 GTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAA-CTCTTGGTTTGATG 169310 ||||| || || || || |||| ||||| ||||| | ||||| ||| ||| | Sbjct 1126 CTCCTTGCCGTGCTGCAGGCCCAGGATCTGCTTGATGT-TTTGAATCTCGGCGTTGCCCG 1184 Query 169311 TGAGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACAC 169370 || ||| | | || ||||| || || || ||| || || || ||||| || | Sbjct 1185 AGATCTGAGCCGCCGAAGCATCTCGCACGTTGAGGAGCTTGCCGCGGAGCGGGAACACTC 1244 Query 169371 CGTAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCAC 169430 ||||| |||| || || || || || || ||||| || || |||||||| |||||||| | Sbjct 1245 CGTAGCGATCGCGGCCCACCACCGACAGGCCCGCCACGGCCAGAGTCTTGGCCGAGTCTC 1304 Query 169431 CCTCGGTGACGATGAGCGTACATTTTCCAGA-TTGTGCCGTACCCGCCTTGTTCGCATCA 169489 ||||||||| |||||| || || | || ||| ||| ||||| | ||| || || Sbjct 1305 CCTCGGTGAGGATGAGGGTGCACTCGGAGGAGTTGCGCC-CGCCCGCGTCGTTTGCGTCG 1363 Query 169490 TCCAATTTGGGAATACC 169506 || | |||||||| || Sbjct 1364 TCGAGCTTGGGAATGCC 1380 Score = 87.8 bits (96), Expect = 2e-12 Identities = 165/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 168455 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 168514 || ||||| || ||| || ||||| ||||||||||| |||| | || |||| Sbjct 335 GCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTGACCCTGCGGCACCAGGTAGTTGACG 394 Query 168515 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCA 168574 ||||| || |||| |||| | || | || || ||| || ||| ||| || Sbjct 395 TTGTTGGAGCCCACAAAGTCCTGGGCTAGGCCCACGATGGTGCCCATGAGGGAGGTCTCG 454 Query 168575 CCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCA 168634 ||||| |||||||| |||||||| || || | |||||| |||||| || || || || Sbjct 455 CCGTGATGGTACGCGCTCTTCTCCGCCACGTAGCCCGCCAGCTGCGCGACCTTGATGTCC 514 Query 168635 TCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCA 168694 | ||| || || | |||||| || ||| | |||||| ||| || ||||| || Sbjct 515 TTCTTCAGGTTGCGCTTGAAGCAGGCAAACAGGATCTTGCGCTGCCCGGGTTTGAGCCCG 574 Query 168695 TCC 168697 ||| Sbjct 575 TCC 577 >seq60 Length=8765 Score = 129 bits (142), Expect = 7e-25 Identities = 124/159 (78%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 |||||| ||||| || | || |||||||| || ||||| || |||||| || ||| Sbjct 2593 CTTTGCGGAGCGCCTGGTGGCGTTTGCGTGCGTGGAGGGCATTTTCTTCAGCGGCAGCTT 2652 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||| | || || ||| |||||||||| ||||||||||| || ||| ||| |||||||| Sbjct 2653 CTGCTCCATCTACTGGGTCAAGAAGCGCGGTCTCATGCCCGGCCTCACCTTTTCCAACGA 2712 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||| ||||||||||| ||||| || ||| || ||||| Sbjct 2713 GCTCATCTCTCGTGATGAGGGCCTGCACACCGACTTTGC 2751 >seq2314 Length=1923 Score = 123 bits (136), Expect = 3e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 |||||||| |||| || | || |||||||| || ||||| ||| |||| || || Sbjct 1843 TCCTTTGCGCAGCGCCTGCTGGCGTTTGCGTGCGTGGAGGGCATCCACTTCAGCGGCGCC 1784 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||||| || || |||||||| ||||| || |||||||| || ||| ||| |||||| Sbjct 1783 TTCTGCGCCATCTACTGGCTCAAAAAGCGCGGCCTCATGCCGGGGCTCACCTTTTCCAAC 1724 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||| || ||||| |||||||| || ||| || ||||| Sbjct 1723 GAGCTCATTTCTCGGGACGAGGGCCTGCACACCGACTTTGC 1683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583219490553840