Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq114 473 1e-128 seq2314 131 2e-25 seq60 105 7e-18 >seq114 Length=7431 Score = 473 bits (524), Expect = 1e-128 Identities = 1095/1634 (67%), Gaps = 116/1634 (7%) Strand=Plus/Minus Query 19165 CGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAA 19224 |||||| ||| ||||| |||||||| | |||||||||||| ||||||| || ||||| Sbjct 1626 CGAGACGTACCACCTGCTGAGCCAGCGTTGGTTCACGCACGCGTCGCCGACGCTCTTCAA 1567 Query 19225 CGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAG 19284 ||| || || | ||||||| || ||||| || | ||||| ||||||| ||||| Sbjct 1566 CGCGGGCACCCCCCGCCCGCAGCTGAGCAGCTGCTTTTTGGTGGCCATGAAGGGCGACAG 1507 Query 19285 CATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGG 19344 ||| |||||||||||||| |||||||||||||||||| |||| |||| | | || || Sbjct 1506 CATCGAGGGCATCTACGACACGCTCAAGGAGTGCGCGGCCATCAGCAAGAGCGCGGGCGG 1447 Query 19345 TATCGGGATCCAC-TGCTCGAATATCCGGTCGA----GTGGTACACGAATCAATGGGACG 19399 |||||| | ||| ||| ||| ||||| | | || ||||| || || || Sbjct 1446 CATCGGGCTGCACATGCACGAC-ATCCGCGCCACGGGGTCGTACA----TCCGGGGCACC 1392 Query 19400 AACGG-AGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTA 19458 ||||| | ||| |||| | || || ||||| ||||| |||||| ||||||| |||| Sbjct 1391 AACGGCACGAGCA-ACGGCGTGGTGCCCATGCTGCGCGTGTTCAACGACACGGCTCGGTA 1333 Query 19459 CGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCA 19518 ||| ||||||| |||||||| ||||||||| | || || | ||||| ||||| ||||| Sbjct 1332 CGTGGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCGGTGTACCTGGAGCCCTGGCA 1273 Query 19519 CGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTG 19578 ||||||||| ||||| | || || |||||| |||||| || | |||||| ||| Sbjct 1272 CGCGGACGTGATGGACTGGCTGGACCTGCGCAAGAACCACGGCAAGGAGGAGGCTCGCGC 1213 Query 19579 TCGCGACCTCTTC-ACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGG 19637 |||||||| ||| |||| | ||||||| || ||||| || ||| || || ||| || Sbjct 1212 CCGCGACCTGTTCTACGGGC-TGTGGATCCCCGACCTGTTTATGAAGCGCGTCGAGGCGG 1154 Query 19638 ACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCG 19697 ||| | ||| |||| | ||||| |||| || ||||| | ||||| | ||| Sbjct 1153 ACGGGCAGTGGAGCCTGTTCTGCCCCAACGAGGCGCCGGGCCTGGCGGACGTGTGGGGCC 1094 Query 19698 AGGCGTTCAATGAGT---TGTACCGGACTTACGTAGC-CCAGGGCCG---GTTCAAGAAG 19750 | ||| ||||| | ||| | |||| ||| | ||||||| | ||||| | Sbjct 1093 CCGAGTT---TGAGTCGCTCTACGCGCGGTACG-AGCGCGAGGGCCGCGCGCGCAAGACG 1038 Query 19751 GTGGTCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACA 19810 || || || | | | | ||| | | | | | ||| ||||| ||||| Sbjct 1037 ATG---CGCGCGCAGCAGCTGTGGTTCGCCATTTTGGAGGCGCAGACGGAGACGGGCACG 981 Query 19811 CCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCG 19870 || |||||| |||||||||||| ||||||||| || ||| ||||| | ||| || Sbjct 980 CCCTACATGCTGTACAAGGACGCCTGCAACGCCAAGAGCAACCAGCAGAACCTGGGCACG 921 Query 19871 ATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAG---CCGGACGAGACT 19927 ||||||| ||||||||| || || ||| | ||| | || | || |||||||| Sbjct 920 ATCAAGTGCAGCAACCTGTGCACCGAGATCGTCGAG---TACACGGCCCCCGACGAGACG 864 Query 19928 GCCGTGTGTAATCTGGCGTCCCTGTGCCTGCCGACTTTCGTCAA----------GGCCTC 19977 |||||||| || || || || | |||||| |||||||| |||| | Sbjct 863 GCCGTGTGCAACCTCGCCTCGATCGCGCTGCCGCGCTTCGTCAAGGACGGCCAGGGCCGC 804 Query 19978 --------------------CTCCTTCGACTTTGCCA------------AATTGTACGAG 20005 |||||| ||| |||| | || || | Sbjct 803 GAGGGCCGCAAGCTCGTGGGCTCCTTGGACGCGGCCACGCGCCGCTTCGACTTTGACCGG 744 Query 20006 GTGACCCGGGTCGT---------CACGCGTAATCTGAATCGCGTCATCGATCGGAACTTT 20056 || | |||||| ||||| || ||||| ||| ||||||| ||| Sbjct 743 CTGGCGGAGGTCGTGTCGGTGGCGACGCGCAACCTGAACCGCATCATCGACGTCAACCAC 684 Query 20057 TACCC---GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGC 20113 ||||| ||| ||| | ||||| || | || ||||| || |||| | ||| Sbjct 683 TACCCCGTCCCCGCGGCCGAGCGCA---GCAACCTCCGGCACCGCCCCATCGGCCTGGGC 627 Query 20114 GTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGG-C 20172 || |||||||||||||||| ||||| |||| ||| | | || |||| ||| ||| | Sbjct 626 GTGCAGGGCCTGGCCGACGCCTTCATCCTGCTGGGCATGCCCTTTGACGGGCCCGAGGCC 567 Query 20173 GCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTG 20232 |||| |||||||| | |||||||||| |||| ||| |||| || || | ||||| Sbjct 566 GCGC-AGCTCAACCGCGACATCTTCGAGACCGTCTACTACGCCGCGCTGCGCACCTCGTG 508 Query 20233 CGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGG 20292 ||| |||||| ||||| ||||||||||| | | ||||| || |||||| |||| Sbjct 507 CGAGCTCGCCCGCCGCGACGGGCCGTACGAGACCTACGCCGGGTCTCCGGCGTCCCAGGG 448 Query 20293 TATCCTCCAGCCGGACATGTGGGGCGT-----CACTGAG-----AATGAGTTTTGGAGCG 20342 | || |||| ||| |||||||||| | | ||| || | | |||| | Sbjct 447 CAAGCTGCAGCACGACCTGTGGGGCGTGACGCCCCAGAGCGGGCGGTGGGACTGGGAG-G 389 Query 20343 CCCT---CAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCA 20399 |||| | | | | | || |||||||| ||||||||| |||| || ||||||| Sbjct 388 CCCTGCGCGCGACCGTGCGCGAG---CACGGGCTGCGCAACTCGCTGCTGGTGGCGCCCA 332 Query 20400 TGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGA 20459 |||| || || ||| ||||||| |||| ||||||||| |||||||| ||||| | Sbjct 331 TGCCCACGGCGAGCACCAGCCAGATCTTGGGCAACAACGAGTGCTTCGAGCCCTACACCA 272 Query 20460 CCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTGG 20519 |||||||||| |||| || || | || |||||| | |||| ||| | |||||| Sbjct 271 GCAACATCTACGTGCGCCGCGTGCTCTCGGGCGAGTTCACCGTGGTCAACCACCACCTGC 212 Query 20520 TCCGCGACTTGCAGAAGATCGATATGTGGTCGCCCAAAATTAAGAATGAAAT--TGTCCG 20577 | | |||| | | | | | ||| || | | ||||| || | || || Sbjct 211 TGCACGACCTCACGCGCCTGGGGCTCTGGGACGCCGACCTCAAGAACGAGCTGGTGGCCC 152 Query 20578 AGCCGGCGGGAGCGTCCAGGCATTGGATATCCCCCAGAACCTCAAGGACATTTACAGGAC 20637 | ||||||| || ||| | || | ||| || ||||||||| | | |||| ||| Sbjct 151 A--CGGCGGGTCGGTGGCGGCCCTCGACGTGCCCGAGGACCTCAAGGGCCTGTACAAGAC 94 Query 20638 CGTATGGGAAATCCCACAG-AAGAGCATCATCGACATGGCGGCCGATCGCGGCGCCTACA 20696 || ||||| ||| ||| | || | |||||||||| ||||| ||||||||||||| Sbjct 93 GGTGTGGGAGATCAAGCAGCGCGTGC-TGGTCGACATGGCCGCCGACCGCGGCGCCTACA 35 Query 20697 TCGACCAGTCCCAG 20710 |||||||| |||| Sbjct 34 TCGACCAGAGCCAG 21 Score = 389 bits (430), Expect = 4e-103 Identities = 594/837 (71%), Gaps = 12/837 (1%) Strand=Plus/Plus Query 79056 CGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCA 79115 ||| || ||||||||||||||||||||||| ||| | ||||| ||| || ||||| Sbjct 843 CGAGGCGAGGTTGCACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACGATCTCGGTGCA 902 Query 79116 CAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTC 79175 || || ||||||| ||||| | ||||| |||||||||||| |||| |||||||| Sbjct 903 CAGGTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCGTTGCAGGCGTC 962 Query 79176 CTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGAT 79235 |||||| |||||| ||||| || ||||| ||| || | || | || ||| | Sbjct 963 CTTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGCCTCCAAAATGGCGAACCACAG 1022 Query 79236 GTCCCGGGCCCGGACAACCTTCTTGTAC---CGACCCTGTGCGA-CGTACGTCCGGTACA 79291 | | | || || | | ||||| | || |||| ||| ||||| | ||| | Sbjct 1023 CTGCTGCGCGCGCAT---CGTCTTGCGCGCGCGGCCCTC-GCGCTCGTACCGCGCGTAGA 1078 Query 79292 ACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCA 79351 | | || | || | || || | ||||||||| ||||| ||||| | || Sbjct 1079 GCGACTCAAACTCGGGGCCCCACACGTCCGCCAGGCCCGGCGCCTCGTTGGGGCAGAACA 1138 Query 79352 GGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCG 79411 || ||| | | ||||| ||| || || ||| || ||||| |||||||||| | ||| Sbjct 1139 GGCTCCACTGCCCGTCCGCCTCGACGCGCTTCATAAACAGGTCGGGGATCCACA-GCCCG 1197 Query 79412 T-GAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAG 79470 | ||| ||||||||| || |||||| | ||| |||||| ||||| || || || Sbjct 1198 TAGAACAGGTCGCGGGCGCGAGCCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCCAGCCAG 1257 Query 79471 TCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCG 79530 ||||| | ||| |||||||| |||||||| || | || || | ||||||||||||||| Sbjct 1258 TCCATCACGTCCGCGTGCCAGGGCTCCAGGTACACCGCAAAGGCGCCCTTGCGCTTGCCG 1317 Query 79531 CCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCG 79590 |||||||||| |||||||| ||||||| |||||| || || ||||||||||| | |||| Sbjct 1318 CCGCCCTGGTCCACGTACCGAGCCGTGTCGTTGAACACGCGCAGCATGGGCACCACGCCG 1377 Query 79591 TCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCA-GTG 79649 | | |||||| || || ||| | || | || || ||| ||| ||| ||| Sbjct 1378 TTGCTCGTGCCGTTGGTGCCCCGGATGTACGACCCCGTGGCGCGGATG-TCGTGCATGTG 1436 Query 79650 GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGAT 79709 | |||||||| || | | |||| |||| |||||||||||||||||| |||||||| Sbjct 1437 CAGCCCGATGCCGCCCGCGCTCTTGCTGATGGCCGCGCACTCCTTGAGCGTGTCGTAGAT 1496 Query 79710 GCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTT 79769 ||||||||| |||| ||||||| || |||| |||||||| || ||| ||| | Sbjct 1497 GCCCTCGATGCTGTCGCCCTTCATGGCCACCAAAAAGCAGCTGCTCAGCTGCGGGCGGGG 1556 Query 79770 CGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATC 79829 || || ||||||||||| ||||||| |||||||||||| | ||||||| ||| | Sbjct 1557 GGTGCCCGCGTTGAAGAGCGTCGGCGACGCGTGCGTGAACCAACGCTGGCTCAGCAGGTG 1616 Query 79830 GTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCAT 79886 ||||||||| | | | | ||| || ||||||||| | || |||||||| Sbjct 1617 GTACGTCTCGATCGCCGACTCCACGTCCTCCTTGTGGATGCCCATCGACACGCGCAT 1673 Score = 194 bits (214), Expect = 2e-44 Identities = 469/702 (67%), Gaps = 15/702 (2%) Strand=Plus/Plus Query 78294 CTGGGACTGGTCGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGG 78353 |||| |||||||||||| || ||||||||||| |||||||||| | | ||| Sbjct 21 CTGGCTCTGGTCGATGTAGGCGCCGCGGTCGGCGGCCATGTCGACCAGCACGCGCTGCTT 80 Query 78354 AATCTCCCAGATGGTCCGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGCGCTTGTAC 78413 |||||||| | ||| ||| | | |||| || || || | | ||| || || || Sbjct 81 GATCTCCCACACCGTCTTGTACAGGCCCTTGAGGTCCTCGGGCACGTCGAGGGCCGCCAC 140 Query 78414 GCTCCCACCGGCTCGCACAATTTCATTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTG 78473 ||| ||| ||| | || ||||| | | | || |||| | | | Sbjct 141 CGACCCGCCGTGGGCCACCAGCTCGTTCTTGAGGTCGGCGTCCCAGAGCCCCAGGCGCGT 200 Query 78474 AAGATCCCGGACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAG 78533 || || | | |||||| |||| | || | ||||||||| | || ||||||| Sbjct 201 GAGGTCGTGCAGCAGGTGGTGGTTGACCACGGTGAACTCGCCCGAGAGCACGCGGCGCAC 260 Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 |||||||||| | ||||| |||||||| ||||||||| |||| ||||||| ||| Sbjct 261 GTAGATGTTGCTGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGCTGGTGCT 320 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATC--TCG 78651 || || |||||||| || ||||| || || || || || || ||| || | | ||| Sbjct 321 CGCCGTGGGCATGGGCGCCACCAGCAGCGAGTTGCGCAGCCCGTGC-TCGCGCACGGTCG 379 Query 78652 ACCTTTAGGCC-----GTCCCAAAATTCATTC---GCCGCGATCCCCCACATGTCCGGTT 78703 | |||| |||||| | || | || | ||||||| ||| | | Sbjct 380 CGCGCAGGGCCTCCCAGTCCCACCGCCCGCTCTGGGGCGTCACGCCCCACAGGTCGTGCT 439 Query 78704 GAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGG 78763 | || | |||| ||||||||| ||||| | | |||||||| | || || || Sbjct 440 GCAGCTTGCCCTGGGACGCCGGAGACCCGGCGTAGGTCTCGTACGGCCCGTCGCGGCGGG 499 Query 78764 CGAGTTCGCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGA 78823 |||| ||||| || | |||| || |||| ||| || | |||||||||| | ||||| Sbjct 500 CGAGCTCGCACGAGGTGCGCAGCGCGGCGTAGTAGACGGTCTCGAAGATGTCGCGGTTGA 559 Query 78824 GCTCGCGCG-CCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGG 78882 ||| ||||| ||| || | |||| || | | ||| |||| |||||| | ||||||||| Sbjct 560 GCT-GCGCGGCCTCGGGCCCGTCAAAGGGCATGCCCAGCAGGATGAAGGCGTCGGCCAGG 618 Query 78883 CCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCT-CTTTCGGGCCGCCTCGGT 78941 ||||| ||||| | |||| || ||||| || | |||||| | || |||||| | Sbjct 619 CCCTGCACGCCCAGGCCGATGGGGCGGTGCCGGAGGTTGCTGCGCTC-GGCCGCGGGGAC 677 Query 78942 CGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGT 78983 ||||| ||| ||||||| |||||||||||| ||||| Sbjct 678 GGGGTAGTGGTTGACGTCGATGATGCGGTTCAGGTTGCGCGT 719 >seq2314 Length=1923 Score = 131 bits (144), Expect = 2e-25 Identities = 120/152 (79%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 59967 GCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGC 60026 || || ||||| || || || | || ||||| |||||||| || ||| |||| ||| Sbjct 1846 GCCTCCTTTGCGCAGCGCCTGCTGGCGTTTGCGTGCGTGGAGGGCATCCACTTCAGCGGC 1787 Query 60027 TCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCC 60086 | ||||| || || | ||||||||||||||| |||||||||||||| || | || ||| Sbjct 1786 GCCTTCTGCGCCATCTACTGGCTCAAAAAGCGCGGCCTCATGCCGGGGCTCACCTTTTCC 1727 Query 60087 AACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||||||| ||||| |||||||||||||| || Sbjct 1726 AACGAGCTCATTTCTCGGGACGAGGGCCTGCA 1695 >seq60 Length=8765 Score = 105 bits (116), Expect = 7e-18 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 59892 CTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAG 59951 || |||||||||| |||||| |||| || || | || || || ||||| ||| Sbjct 2513 CTCTTCCGTGCCACCGAGACGGTACCCGTGGTGAAGAAGAAGGCCGACTGGGCTCTGCGC 2572 Query 59952 TGGATGA--GTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAG 60009 ||||| | | | |||| | | ||||| | || || | || ||||| |||||||| | Sbjct 2573 TGGATCAACGGCTCGGAG-AGC-TTTGCGGAGCGCCTGGTGGCGTTTGCGTGCGTGGAGG 2630 Query 60010 GAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGC 60069 | || |||||| ||| ||||| | || | |||| |||| ||||| || ||||||| Sbjct 2631 GCATTTTCTTCAGCGGCAGCTTCTGCTCCATCTACTGGGTCAAGAAGCGCGGTCTCATGC 2690 Query 60070 CGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 | ||||| | || ||||||||||| || || || || |||||||| || Sbjct 2691 CCGGCCTCACCTTTTCCAACGAGCTCATCTCTCGTGATGAGGGCCTGCA 2739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548485950731040