Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq114 260 2e-64 seq81 168 7e-37 >seq114 Length=7431 Score = 260 bits (288), Expect = 2e-64 Identities = 499/726 (69%), Gaps = 12/726 (2%) Strand=Plus/Minus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||||||| || | ||||||| | || |||||||| |||| || || |||||| Sbjct 1625 GAGACGTACCACCTGCTGAGCCAGCGTTGGTTCACGCACGCGTCGCCGACGCTCTTCAAC 1566 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 || || || | ||| ||| || |||||||| ||||||| ||||||| ||| Sbjct 1565 GCGGGCACCCCCCGCCCGCAGCTGAGCAGCTGCTTTTTGGTGGCCATGAAGGGCGACAGC 1506 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 ||||| ||||||||||| |||||||||||||| || |||| |||| | |||| || Sbjct 1505 ATCGAGGGCATCTACGACACGCTCAAGGAGTGCGCGGCCATCAGCAAGAGCGCGGGCGGC 1446 Query 53423 ATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG 53481 ||||| | ||| ||| ||| | |||| || | || | ||| ||| || ||||| Sbjct 1445 ATCGGGCTGCACATGCACGA-CATCCGCGCCACGGGGTCGTACATCCGGGGCACCAACGG 1387 Query 53482 CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAA 53541 | | | || | ||||| ||||| ||||| |||||| ||||||| |||||||| | Sbjct 1386 CACGAGCAACGGCGTGGTGCCCATGCTGCGCGTGTTCAACGACACGGCTCGGTACGTGGA 1327 Query 53542 CCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGA 53601 |||||| || || ||||||||||| | || || | ||||| ||||| |||||||| || Sbjct 1326 CCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCGGTGTACCTGGAGCCCTGGCACGCGGA 1267 Query 53602 CATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGA 53661 | | ||||| | || || ||||| ||| || || | || ||| ||| ||| || Sbjct 1266 CGTGATGGACTGGCTGGACCTGCGCAAGAACCACGGCAAGGAGGAGGCTCGCGCCCGCGA 1207 Query 53662 CCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGG 53720 |||||| ||| | |||||||| || ||||| || ||| | || ||| ||||| | Sbjct 1206 CCTGTTCTAC-GGGCTGTGGATCCCCGACCTGTTTATGAAGCGCGTCGAGGCGGACGGGC 1148 Query 53721 AGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGT 53780 ||||| |||| | ||||| |||||| || ||||| || || | || |||| Sbjct 1147 AGTGGAGCCTGTTCTGCCCCAACGAGGCGCCGGGCCTGGCGGACGTGTGGGGCCCCGAGT 1088 Query 53781 TTAACGAGATGTATCGGACGTACGCAGTTC-AGGGCCGC---TACAAGAAGAAGGTCAAG 53836 || | | | || | ||||| || | |||||||| ||||| || | | Sbjct 1087 TTGAGTCGCTCTACGCGCGGTACG-AGCGCGAGGGCCGCGCGCGCAAGACGATGCGC--- 1032 Query 53837 GCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATG 53896 |||| || | ||| || || | || ||| ||||||||| ||||| |||||| Sbjct 1031 GCGCAGCAGCTGTGGTTCGCCATTTTGGAGGCGCAGACGGAGACGGGCACGCCCTACATG 972 Query 53897 TGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCG 53956 |||||||| | ||||| |||||||||||| ||||| | ||| ||||| | Sbjct 971 CTGTACAAGGACGCCTGCAACGCCAAGAGCAACCAGCAGAACCTGGGCACGATCAAGTGC 912 Query 53957 AGCAAC 53962 |||||| Sbjct 911 AGCAAC 906 Score = 111 bits (122), Expect = 2e-19 Identities = 340/515 (66%), Gaps = 28/515 (5%) Strand=Plus/Minus Query 55132 GACTCGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGC---GCG 55188 ||| || ||||||||||| |||||||| || ||||||| ||||| ||| Sbjct 720 GACGCGCAACCTGAACCGCATCATCGACGTCAACCACTACCCCGTCCCCGCGGCCGAGCG 661 Query 55189 CAAGTCCAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTT 55248 || ||||||||||||||| ||||||| | | || || |||||| |||||||| ||| Sbjct 660 CAG---CAACCTCCGGCACCGCCCCATCGGCCTGGGCGTGCAGGGCCTGGCCGACGCCTT 604 Query 55249 CATGATGCTCGGATTGCCCTTCGACTCGGAACCTGCTCGAGAAATT-AACCAGGACATCT 55307 ||| |||| || ||||||| ||| || | | || | | | |||| ||||||| Sbjct 603 CATCCTGCTGGGCATGCCCTTTGACG-GGCCCGAGGCCGCGCAGCTCAACCGCGACATCT 545 Query 55308 TC-AGTCGCATCTACTTTGCAGCGCTCGAGGAG-TCGTGTCATCTGGCTATGAGCGAGGG 55365 || || | | |||||| || ||||| | | | ||||| | || || |||| || Sbjct 544 TCGAGAC-CGTCTACTACGCCGCGCT-GCGCACCTCGTGCGAGCTCGCCCGCCGCGACGG 487 Query 55366 GACCTACGAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATG 55425 | | |||||||| | | | || || || | |||| || ||| ||| || || Sbjct 486 GCCGTACGAGACCTACGCCGGGTCTCCGGCGTCCCAGGGCAAGCTGCAGCACGACCTGTG 427 Query 55426 GGGCAAGTCTGACCCCAT--------GTTTGACAAGTTGAA-----GCATGACATT-CAC 55471 |||| | | ||||| || ||| | | || ||| | | | Sbjct 426 GGGCGTGACG--CCCCAGAGCGGGCGGTGGGACTGGGAGGCCCTGCGCGCGACCGTGCGC 369 Query 55472 TTGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAG 55531 | || || |||||||| ||||| |||||||| ||||| || ||| || ||| Sbjct 368 GAGCACGGGCTGCGCAACTCGCTGCTGGTGGCGCCCATGCCCACGGCGAGCACCAGCCAG 309 Query 55532 ATCATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACC 55591 ||| |||||||||||||| |||||||| ||||| | |||||||||| ||||||| Sbjct 308 ATCTTGGGCAACAACGAGTGCTTCGAGCCCTACACCAGCAACATCTACGTGCGCCGCGTG 249 Query 55592 CTAGCAGGTGAGTTTGTCATGATCAACAAGCACCT 55626 || | || ||||| | || ||||| | ||||| Sbjct 248 CTCTCGGGCGAGTTCACCGTGGTCAACCACCACCT 214 >seq81 Length=8194 Score = 168 bits (186), Expect = 7e-37 Identities = 340/498 (68%), Gaps = 16/498 (3%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || ||||||||||| || ||||||| ||| | | |||||| ||| || |||| || Sbjct 158 CCCGTGCCGATGCCCTCCGCGCCGTTGAGCAGCACCGTCGGCAGAATGGGCACGTACCAC 217 Query 151936 TCCGGCTCCA---CCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAA--TTGTCAG 151990 |||||||| | ||||| || || ||| || || | | | | | | | ||| | Sbjct 218 TCCGGCTCGATGACCTGT---CCCTCCTCCGCCAGGT--TGCGCAGCAGCACGTCGTCGG 272 Query 151991 CCGGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGG 152050 | | || | || || | || | || |||||||||||||| || | ||||| Sbjct 273 CGGCGGGAAAGAGGCGGCGCGCCACGGCGGCCAGGCGCGTGAAGATGTAGCGCGCGCTGG 332 Query 152051 CCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGA 152110 | || |||||||| || ||| ||||| |||||||| || ||| | ||| ||||| Sbjct 333 CGGCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTGACCCTGCGGCACCAGGTAGTTGA 392 Query 152111 GGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTT 152170 |||||||| |||||| || | ||| || | ||| || |||||| || | | Sbjct 393 CGTTGTTGGAGCCCACAAAGTCCTGGGCTAGGCCCACGATGGTGCCCATGAGGGAGGTCT 452 Query 152171 CACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGT 152230 | ||||| || ||||| ||| |||||| | ||| ||||||| |||||| ||||| |||| Sbjct 453 CGCCGTGATGGTACGCGCTCTTCTCCGCCACGTAGCCCGCCAGCTGCGCGACCTTGATGT 512 Query 152231 CCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAAC 152290 || || ||||||| ||||| ||||| | | | ||||||||| ||||| | | Sbjct 513 CCTTCTTCAGGTTGCGCTTGAAGCAGGCAAACAGGATCTTGCGCTGCCCGGGTTTGAGCC 572 Query 152291 CGTCCACCACGTGAGGAATCGAACGCTTGATGTCCTCTGCGC---TAAAGTTTGCCAGAT 152347 ||||||| || || || || |||| | ||| | |||| |||| || || | Sbjct 573 CGTCCACGGCGCTGGGGATGGAGCGCTCCAGGTCGGC-GCGCGAGAAAAGGATG--AGCT 629 Query 152348 CGCGATGCACAAAGTCGG 152365 |||||| ||| || |||| Sbjct 630 CGCGATTCACGAAATCGG 647 Score = 156 bits (172), Expect = 5e-33 Identities = 219/306 (72%), Gaps = 1/306 (0%) Strand=Plus/Plus Query 117289 CCACGGTG-CTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAA 117347 |||||| | | ||||| ||||| ||||| || | ||| || || |||||||| || | Sbjct 294 CCACGGCGGCCAGGCGCGTGAAGATGTAGCGCGCGCTGGCGGCGTCCTTGCCGCCCTGCA 353 Query 117348 GACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGT 117407 | ||||| || || || || |||| ||| | ||| | |||||||| ||||||||||| Sbjct 354 GGCGCGTGCCAAACTGACCCTGCGGCACCAGGTAGTTGACGTTGTTGGAGCCCACAAAGT 413 Query 117408 TTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCT 117467 || || | | || || || || |||| | ||| || || || ||||| ||| Sbjct 414 CCTGGGCTAGGCCCACGATGGTGCCCATGAGGGAGGTCTCGCCGTGATGGTACGCGCTCT 473 Query 117468 GCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGA 117527 |||||||||||||||||||||||| || ||||| ||||| | ||||||| ||||| Sbjct 474 TCTCCGCCACGTAGCCCGCCAGCTGCGCGACCTTGATGTCCTTCTTCAGGTTGCGCTTGA 533 Query 117528 GGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCG 117587 ||||||| | | | ||||||||| | || || || || ||| | || ||||| | Sbjct 534 AGCAGGCAAACAGGATCTTGCGCTGCCCGGGTTTGAGCCCGTCCACGGCGCTGGGGATGG 593 Query 117588 AACGCT 117593 | |||| Sbjct 594 AGCGCT 599 Score = 105 bits (116), Expect = 7e-18 Identities = 233/342 (68%), Gaps = 12/342 (4%) Strand=Plus/Plus Query 152782 CCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTCATGATCATCAGACGACCGTAGCGC 152841 ||||||||||| || ||||| | ||| || ||||||||||| ||| | ||||||||| Sbjct 1046 CCCTTGATGTGGGAGCCGTCGTGGTCCTGATCCGTCATGATCATGAGATGGCCGTAGCGC 1105 Query 152842 AG-GTCACGTAGTGACCCGTAGACCTTTCCATGTTGAAGCCCGAGGATCTTTTTGAGGTT 152900 || || || || ||| |||| || || || || || ||||||| |||| ||| Sbjct 1106 AGCGTGCCGCTGT-TGTTGTACTCCTTGCCGTGCTGCAGGCCCAGGATCTGCTTGATGTT 1164 Query 152901 GGAAAATTCCTCATTATCGGTCACCTGTTTCACCGTGGCATCCCGAACATTGCGCGGCTT 152960 || || | || | | | ||| | ||| ||||| || || ||| | |||| Sbjct 1165 TTGAATCTCGGCGTTGCCCGAGATCTGAGCCGCCGAAGCATCTCGCACGTTGAGGAGCTT 1224 Query 152961 TCCCCGGAGTGGAAACACGCCGAACGCG-TTGCGGCCTACAACGCTCAGACCGGCAATAG 153019 || ||||| || ||||| ||| | ||| | |||||| || || ||| || || | | Sbjct 1225 GCCGCGGAGCGGGAACACTCCGTA-GCGATCGCGGCCCACCACCGACAGGCCCGCCACGG 1283 Query 153020 CAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAGCGTACAGTCGTGAGACCGATGAG 153079 | || | || |||||||| |||||||||| || || || || ||| ||| || | Sbjct 1284 CCAGAGTCTTGGCCGAGTCTCCCTCGGTGAGGATGAGGGTGCACTCG-GAG---GAGTTG 1339 Query 153080 TACCGGCCC----AGTTGGCGTCGTCAAGCTTGGGGATTCCC 153117 || |||| ||| |||||||| |||||||| || ||| Sbjct 1340 CGCCCGCCCGCGTCGTTTGCGTCGTCGAGCTTGGGAATGCCC 1381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547177243426800