Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq114 260 2e-64
seq81 168 7e-37
>seq114
Length=7431
Score = 260 bits (288), Expect = 2e-64
Identities = 499/726 (69%), Gaps = 12/726 (2%)
Strand=Plus/Minus
Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302
||||||||| || | ||||||| | || |||||||| |||| || || ||||||
Sbjct 1625 GAGACGTACCACCTGCTGAGCCAGCGTTGGTTCACGCACGCGTCGCCGACGCTCTTCAAC 1566
Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362
|| || || | ||| ||| || |||||||| ||||||| ||||||| |||
Sbjct 1565 GCGGGCACCCCCCGCCCGCAGCTGAGCAGCTGCTTTTTGGTGGCCATGAAGGGCGACAGC 1506
Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422
||||| ||||||||||| |||||||||||||| || |||| |||| | |||| ||
Sbjct 1505 ATCGAGGGCATCTACGACACGCTCAAGGAGTGCGCGGCCATCAGCAAGAGCGCGGGCGGC 1446
Query 53423 ATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG 53481
||||| | ||| ||| ||| | |||| || | || | ||| ||| || |||||
Sbjct 1445 ATCGGGCTGCACATGCACGA-CATCCGCGCCACGGGGTCGTACATCCGGGGCACCAACGG 1387
Query 53482 CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAA 53541
| | | || | ||||| ||||| ||||| |||||| ||||||| |||||||| |
Sbjct 1386 CACGAGCAACGGCGTGGTGCCCATGCTGCGCGTGTTCAACGACACGGCTCGGTACGTGGA 1327
Query 53542 CCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGA 53601
|||||| || || ||||||||||| | || || | ||||| ||||| |||||||| ||
Sbjct 1326 CCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCGGTGTACCTGGAGCCCTGGCACGCGGA 1267
Query 53602 CATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGA 53661
| | ||||| | || || ||||| ||| || || | || ||| ||| ||| ||
Sbjct 1266 CGTGATGGACTGGCTGGACCTGCGCAAGAACCACGGCAAGGAGGAGGCTCGCGCCCGCGA 1207
Query 53662 CCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGG 53720
|||||| ||| | |||||||| || ||||| || ||| | || ||| ||||| |
Sbjct 1206 CCTGTTCTAC-GGGCTGTGGATCCCCGACCTGTTTATGAAGCGCGTCGAGGCGGACGGGC 1148
Query 53721 AGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGT 53780
||||| |||| | ||||| |||||| || ||||| || || | || ||||
Sbjct 1147 AGTGGAGCCTGTTCTGCCCCAACGAGGCGCCGGGCCTGGCGGACGTGTGGGGCCCCGAGT 1088
Query 53781 TTAACGAGATGTATCGGACGTACGCAGTTC-AGGGCCGC---TACAAGAAGAAGGTCAAG 53836
|| | | | || | ||||| || | |||||||| ||||| || | |
Sbjct 1087 TTGAGTCGCTCTACGCGCGGTACG-AGCGCGAGGGCCGCGCGCGCAAGACGATGCGC--- 1032
Query 53837 GCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATG 53896
|||| || | ||| || || | || ||| ||||||||| ||||| ||||||
Sbjct 1031 GCGCAGCAGCTGTGGTTCGCCATTTTGGAGGCGCAGACGGAGACGGGCACGCCCTACATG 972
Query 53897 TGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCG 53956
|||||||| | ||||| |||||||||||| ||||| | ||| ||||| |
Sbjct 971 CTGTACAAGGACGCCTGCAACGCCAAGAGCAACCAGCAGAACCTGGGCACGATCAAGTGC 912
Query 53957 AGCAAC 53962
||||||
Sbjct 911 AGCAAC 906
Score = 111 bits (122), Expect = 2e-19
Identities = 340/515 (66%), Gaps = 28/515 (5%)
Strand=Plus/Minus
Query 55132 GACTCGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGC---GCG 55188
||| || ||||||||||| |||||||| || ||||||| ||||| |||
Sbjct 720 GACGCGCAACCTGAACCGCATCATCGACGTCAACCACTACCCCGTCCCCGCGGCCGAGCG 661
Query 55189 CAAGTCCAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTT 55248
|| ||||||||||||||| ||||||| | | || || |||||| |||||||| |||
Sbjct 660 CAG---CAACCTCCGGCACCGCCCCATCGGCCTGGGCGTGCAGGGCCTGGCCGACGCCTT 604
Query 55249 CATGATGCTCGGATTGCCCTTCGACTCGGAACCTGCTCGAGAAATT-AACCAGGACATCT 55307
||| |||| || ||||||| ||| || | | || | | | |||| |||||||
Sbjct 603 CATCCTGCTGGGCATGCCCTTTGACG-GGCCCGAGGCCGCGCAGCTCAACCGCGACATCT 545
Query 55308 TC-AGTCGCATCTACTTTGCAGCGCTCGAGGAG-TCGTGTCATCTGGCTATGAGCGAGGG 55365
|| || | | |||||| || ||||| | | | ||||| | || || |||| ||
Sbjct 544 TCGAGAC-CGTCTACTACGCCGCGCT-GCGCACCTCGTGCGAGCTCGCCCGCCGCGACGG 487
Query 55366 GACCTACGAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATG 55425
| | |||||||| | | | || || || | |||| || ||| ||| || ||
Sbjct 486 GCCGTACGAGACCTACGCCGGGTCTCCGGCGTCCCAGGGCAAGCTGCAGCACGACCTGTG 427
Query 55426 GGGCAAGTCTGACCCCAT--------GTTTGACAAGTTGAA-----GCATGACATT-CAC 55471
|||| | | ||||| || ||| | | || ||| | | |
Sbjct 426 GGGCGTGACG--CCCCAGAGCGGGCGGTGGGACTGGGAGGCCCTGCGCGCGACCGTGCGC 369
Query 55472 TTGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAG 55531
| || || |||||||| ||||| |||||||| ||||| || ||| || |||
Sbjct 368 GAGCACGGGCTGCGCAACTCGCTGCTGGTGGCGCCCATGCCCACGGCGAGCACCAGCCAG 309
Query 55532 ATCATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACC 55591
||| |||||||||||||| |||||||| ||||| | |||||||||| |||||||
Sbjct 308 ATCTTGGGCAACAACGAGTGCTTCGAGCCCTACACCAGCAACATCTACGTGCGCCGCGTG 249
Query 55592 CTAGCAGGTGAGTTTGTCATGATCAACAAGCACCT 55626
|| | || ||||| | || ||||| | |||||
Sbjct 248 CTCTCGGGCGAGTTCACCGTGGTCAACCACCACCT 214
>seq81
Length=8194
Score = 168 bits (186), Expect = 7e-37
Identities = 340/498 (68%), Gaps = 16/498 (3%)
Strand=Plus/Plus
Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935
|| || ||||||||||| || ||||||| ||| | | |||||| ||| || |||| ||
Sbjct 158 CCCGTGCCGATGCCCTCCGCGCCGTTGAGCAGCACCGTCGGCAGAATGGGCACGTACCAC 217
Query 151936 TCCGGCTCCA---CCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAA--TTGTCAG 151990
|||||||| | ||||| || || ||| || || | | | | | | | ||| |
Sbjct 218 TCCGGCTCGATGACCTGT---CCCTCCTCCGCCAGGT--TGCGCAGCAGCACGTCGTCGG 272
Query 151991 CCGGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGG 152050
| | || | || || | || | || |||||||||||||| || | |||||
Sbjct 273 CGGCGGGAAAGAGGCGGCGCGCCACGGCGGCCAGGCGCGTGAAGATGTAGCGCGCGCTGG 332
Query 152051 CCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGA 152110
| || |||||||| || ||| ||||| |||||||| || ||| | ||| |||||
Sbjct 333 CGGCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTGACCCTGCGGCACCAGGTAGTTGA 392
Query 152111 GGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTT 152170
|||||||| |||||| || | ||| || | ||| || |||||| || | |
Sbjct 393 CGTTGTTGGAGCCCACAAAGTCCTGGGCTAGGCCCACGATGGTGCCCATGAGGGAGGTCT 452
Query 152171 CACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGT 152230
| ||||| || ||||| ||| |||||| | ||| ||||||| |||||| ||||| ||||
Sbjct 453 CGCCGTGATGGTACGCGCTCTTCTCCGCCACGTAGCCCGCCAGCTGCGCGACCTTGATGT 512
Query 152231 CCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAAC 152290
|| || ||||||| ||||| ||||| | | | ||||||||| ||||| | |
Sbjct 513 CCTTCTTCAGGTTGCGCTTGAAGCAGGCAAACAGGATCTTGCGCTGCCCGGGTTTGAGCC 572
Query 152291 CGTCCACCACGTGAGGAATCGAACGCTTGATGTCCTCTGCGC---TAAAGTTTGCCAGAT 152347
||||||| || || || || |||| | ||| | |||| |||| || || |
Sbjct 573 CGTCCACGGCGCTGGGGATGGAGCGCTCCAGGTCGGC-GCGCGAGAAAAGGATG--AGCT 629
Query 152348 CGCGATGCACAAAGTCGG 152365
|||||| ||| || ||||
Sbjct 630 CGCGATTCACGAAATCGG 647
Score = 156 bits (172), Expect = 5e-33
Identities = 219/306 (72%), Gaps = 1/306 (0%)
Strand=Plus/Plus
Query 117289 CCACGGTG-CTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAA 117347
|||||| | | ||||| ||||| ||||| || | ||| || || |||||||| || |
Sbjct 294 CCACGGCGGCCAGGCGCGTGAAGATGTAGCGCGCGCTGGCGGCGTCCTTGCCGCCCTGCA 353
Query 117348 GACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGT 117407
| ||||| || || || || |||| ||| | ||| | |||||||| |||||||||||
Sbjct 354 GGCGCGTGCCAAACTGACCCTGCGGCACCAGGTAGTTGACGTTGTTGGAGCCCACAAAGT 413
Query 117408 TTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCT 117467
|| || | | || || || || |||| | ||| || || || ||||| |||
Sbjct 414 CCTGGGCTAGGCCCACGATGGTGCCCATGAGGGAGGTCTCGCCGTGATGGTACGCGCTCT 473
Query 117468 GCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGA 117527
|||||||||||||||||||||||| || ||||| ||||| | ||||||| |||||
Sbjct 474 TCTCCGCCACGTAGCCCGCCAGCTGCGCGACCTTGATGTCCTTCTTCAGGTTGCGCTTGA 533
Query 117528 GGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCG 117587
||||||| | | | ||||||||| | || || || || ||| | || ||||| |
Sbjct 534 AGCAGGCAAACAGGATCTTGCGCTGCCCGGGTTTGAGCCCGTCCACGGCGCTGGGGATGG 593
Query 117588 AACGCT 117593
| ||||
Sbjct 594 AGCGCT 599
Score = 105 bits (116), Expect = 7e-18
Identities = 233/342 (68%), Gaps = 12/342 (4%)
Strand=Plus/Plus
Query 152782 CCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTCATGATCATCAGACGACCGTAGCGC 152841
||||||||||| || ||||| | ||| || ||||||||||| ||| | |||||||||
Sbjct 1046 CCCTTGATGTGGGAGCCGTCGTGGTCCTGATCCGTCATGATCATGAGATGGCCGTAGCGC 1105
Query 152842 AG-GTCACGTAGTGACCCGTAGACCTTTCCATGTTGAAGCCCGAGGATCTTTTTGAGGTT 152900
|| || || || ||| |||| || || || || || ||||||| |||| |||
Sbjct 1106 AGCGTGCCGCTGT-TGTTGTACTCCTTGCCGTGCTGCAGGCCCAGGATCTGCTTGATGTT 1164
Query 152901 GGAAAATTCCTCATTATCGGTCACCTGTTTCACCGTGGCATCCCGAACATTGCGCGGCTT 152960
|| || | || | | | ||| | ||| ||||| || || ||| | ||||
Sbjct 1165 TTGAATCTCGGCGTTGCCCGAGATCTGAGCCGCCGAAGCATCTCGCACGTTGAGGAGCTT 1224
Query 152961 TCCCCGGAGTGGAAACACGCCGAACGCG-TTGCGGCCTACAACGCTCAGACCGGCAATAG 153019
|| ||||| || ||||| ||| | ||| | |||||| || || ||| || || | |
Sbjct 1225 GCCGCGGAGCGGGAACACTCCGTA-GCGATCGCGGCCCACCACCGACAGGCCCGCCACGG 1283
Query 153020 CAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAGCGTACAGTCGTGAGACCGATGAG 153079
| || | || |||||||| |||||||||| || || || || ||| ||| || |
Sbjct 1284 CCAGAGTCTTGGCCGAGTCTCCCTCGGTGAGGATGAGGGTGCACTCG-GAG---GAGTTG 1339
Query 153080 TACCGGCCC----AGTTGGCGTCGTCAAGCTTGGGGATTCCC 153117
|| |||| ||| |||||||| |||||||| || |||
Sbjct 1340 CGCCCGCCCGCGTCGTTTGCGTCGTCGAGCTTGGGAATGCCC 1381
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547177243426800
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