Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq114 210 2e-49
seq2724 176 5e-39
seq81 161 1e-34
seq3257 132 5e-26
seq55 118 1e-21
seq2314 87.8 2e-12
>seq114
Length=7431
Score = 210 bits (232), Expect = 2e-49
Identities = 509/765 (67%), Gaps = 17/765 (2%)
Strand=Plus/Plus
Query 80908 GACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCAC 80967
|| || || |||||||||||| ||| || | | || |||||||||| || ||||||
Sbjct 844 GAGGCGAGGTTGCACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACGATCTCGGTGCAC 903
Query 80968 AAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCC 81027
| || |||| || || |||||||| | |||||| |||||||||||| ||||||
Sbjct 904 AGGTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCGTTGCAGGCGTCC 963
Query 81028 TTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATC 81087
||||| |||||| || || || ||||| ||| | || | |||||| ||| | |
Sbjct 964 TTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGCCTCCAAAATGGCGAACCACAGC 1023
Query 81088 T----CGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AG 81142
| ||||||| | | | ||||| ||| ||| | | ||| ||||| ||
Sbjct 1024 TGCTGCGCGCGCATCGTC----TTGCGCGCGCGGCCCTCGCGCTCGTACCGCGCGTAGAG 1079
Query 81143 CTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCA 81202
| | || |||| || || | || | ||| | || |||||| ||||| | ||
Sbjct 1080 CGAC-TCAAACTCGGGGCCCCACACGTCCGCCAGGCCCGGCGCCTCGTTGGGGCAGAACA 1138
Query 81203 GGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGG 81262
|| ||| | ||| ||| || |||||| || ||| |||||||| || ||
Sbjct 1139 GGCTCCACTGCCCGTCCGCCTCGACGCGCTTCATAAACAGGTCGGGGATCCACAGCCCGT 1198
Query 81263 TGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGT 81322
||||||||||||| ||| |||||||| | || ||||| ||||| || || |||
Sbjct 1199 AGAACAGGTCGCGGGCGCGAGCCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCCAGCCAGT 1258
Query 81323 CCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGC 81379
|||| | |||||| ||||| |||||||| ||||| || | | |||||||| | ||
Sbjct 1259 CCATCACGTCCGCGTGCCAGGGCTCCAGGTACACCGCAAAGGCGCCCTTGCGCTTGCCGC 1318
Query 81380 CACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCAT 81439
| ||||||| ||||| || || || |||| || || |||| ||| || | | || |
Sbjct 1319 CGCCCTGGTCCACGTACCGAGCCGTGTCGTTGAACACGCGCAGCATGGGCACCACGCCGT 1378
Query 81440 CTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAA 81499
| ||||| || ||| ||| ||||||| ||||||| | | | || |
Sbjct 1379 TGCTCGTGCCGTTGGTGCCCCGGATGTACGACCCCGTGGCGCGGATGTCGTGCATGTGCA 1438
Query 81500 GACCGATGCCACCTGACCACTT--TGAAATCTGAGCACACCGGTTCATGGTCTCATAAAT 81557
| |||||||| || | | ||| ||| | | |||| || || | || || || ||
Sbjct 1439 GCCCGATGCCGCCCGCGCTCTTGCTGATGGCCGCGCACTCC--TTGAGCGTGTCGTAGAT 1496
Query 81558 TCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTT 81617
||||||||||| || |||||| | | ||| || ||||| || ||| ||||
Sbjct 1497 GCCCTCGATGCTGTCGCCCTTCATGGCCACCAAAAAGCAGCTGCTCAGCTGCGGGCGGGG 1556
Query 81618 TGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACG 81662
| ||| || ||||| || || || | |||||| |||| ||||
Sbjct 1557 GGTGCCCGCGTTGAAGAGCGTCGGCGACGCGTGCGTGAACCAACG 1601
Score = 172 bits (190), Expect = 6e-38
Identities = 368/541 (68%), Gaps = 14/541 (3%)
Strand=Plus/Plus
Query 80304 CCAGA-CACCAAGCTTGTGCAGATCTTTCACAAGGTGCTTGTTAATCATGACAAACTCTC 80362
||||| | ||| || ||| || || | || ||||| | ||| | || | ||||| |
Sbjct 183 CCAGAGCCCCAGGCGCGTG-AGGTCGTGCAGCAGGTGGTGGTTGACCACGGTGAACTCGC 241
Query 80363 CCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTC 80422
||| ||| ||| |||| || | ||| | ||||| ||||| || ||||||||| |
Sbjct 242 CCGAGAGCACGCGGCGCACGTAGATGTTGCTGGTGTAGGGCTCGAAGCACTCGTTGTTGC 301
Query 80423 CGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGC 80482
| | |||||| ||||||||||| ||||| || | |||| ||| || || ||||| |
Sbjct 302 CCAAGATCTGGCTGGTGCTCGCCGTGGGCATGGGCGCCACCAGCAGCGAGTTGCGCAGCC 361
Query 80483 CGTGCTTCTTGATATCCTCGCGCAAATCTGACCAAAAATCAACCCCAACGCTGTGAC--- 80539
|||||| | | |||||| | ||| || | || | ||| | |
Sbjct 362 CGTGCTCGCGCACGGTCGCGCGCAGGGCCTCCCAGTCC-CACCGCCCGCTCTGGGGCGTC 420
Query 80540 ----CCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCG 80595
|||||| ||||||||||| |||||| |||||||||||||| ||| | ||||||
Sbjct 421 ACGCCCCACAGGTCGTGCTGCAGCTTGCCCTGGGACGCCGGAGACCCGGCGTAGGTCTCG 480
Query 80596 TACGGGCCCTC-CGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCA 80654
||||| || || || | ||| ||||| ||||| || || |||| || | |
Sbjct 481 TACGGCCCGTCGCGGCG-GGCGAGCTCGCACGAGGTGCGCAGCGCGGCGTAGTAGACGGT 539
Query 80655 CTCAAAGACGCCCTTGTTCACACCGCGCG-CCTGTGGGTCGTCGAACGACAAGCCCATCA 80713
||| |||| | | ||| | | ||||| ||| || |||| || | || ||||| ||
Sbjct 540 CTCGAAGATGTCGCGGTTGAG-CTGCGCGGCCTCGGGCCCGTCAAAGGGCATGCCCAGCA 598
Query 80714 TCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCG 80773
||||| |||| ||||||||||| ||||| | | |||| |||||||| || |||
Sbjct 599 GGATGAAGGCGTCGGCCAGGCCCTGCACGCCCAGGCCGATGGGGCGGTGCCGGAGGTTGC 658
Query 80774 ATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTG 80833
||||||||| | || | ||||| ||| ||||||| ||||||||||||||| |
Sbjct 659 TGCGCTCGGCCGCGGGGACGGGGTAGTGGTTGACGTCGATGATGCGGTTCAGGTTGCGCG 718
Query 80834 T 80834
|
Sbjct 719 T 719
>seq2724
Length=1646
Score = 176 bits (194), Expect = 5e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| ||||||||||| || |||||||| || || || ||||| |||||
Sbjct 1535 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCG 1476
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || | ||||| || || |||||||||||||| |||||||| ||||||
Sbjct 1475 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAG 1416
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || ||||| || || ||||| || ||||||| || || || | ||||| ||
Sbjct 1415 CAGCGCCTGATTTTCGCGGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAAC 1356
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || |||||||| ||| | ||||| ||||| ||
Sbjct 1355 ATCCAGAAGGAGTCTACCCTTCATCTGGTCCTCCGTCTGCGCGGCGG 1309
>seq81
Length=8194
Score = 161 bits (178), Expect = 1e-34
Identities = 307/448 (69%), Gaps = 8/448 (2%)
Strand=Plus/Minus
Query 31961 AGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACG 32020
|||| ||||| || || | |||||| ||||| || ||||||||| | | | |
Sbjct 599 AGCGCTCCATCCCCAGCGCCGTGGACGGGCTCAAACCCGGGCAGCGCAAGATCCTGTTTG 540
Query 32021 CCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGG 32080
||||| ||||| |||||| || ||||| ||||| ||||||||| ||||||||||||
Sbjct 539 CCTGCTTCAAGCGCAACCTGAAGAAGGACATCAAGGTCGCGCAGCTGGCGGGCTACGTGG 480
Query 32081 CAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTG 32140
| ||| | | || || || ||||||||| | || ||| ||||||||| || ||| |
Sbjct 479 CGGAGAAGAGCGCGTACCATCACGGCGAGACCTCCCTCATGGGCACCATCGTGGGCCTAG 420
Query 32141 CTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGA 32200
| ||| ||||||| || | || ||| | |||| || | ||| || |||||||| |
Sbjct 419 CCCAGGACTTTGTGGGCTCCAACAACGTCAACTACCTGGTGCCGCAGGGTCAGTTTGGCA 360
Query 32201 CCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGCAC 32260
| || || || |||||||| || || ||| | || ||||||||||| || || ||
Sbjct 359 CGCGCCTGCAGGGCGGCAAGGACGCCGCCAGCGCGCGCTACATCTTCACGCGCCTGGCCG 300
Query 32261 CTTCGACGCGCAAGAT-TTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTT---T 32316
| | ||||| | |||| ||| | ||||| | | |||| | ||| |
Sbjct 299 CCGTGGCGCGCCGCCTCTTTCCCGCCG-CCGACGACGTGCTGCT---GCGCAACCTGGCG 244
Query 32317 GATGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTG 32376
|| || || ||| ||||||||| || ||| || | || |||| | | || |
Sbjct 243 GAGGAGGGACAGGTCATCGAGCCGGAGTGGTACGTGCCCATTCTGCCGACGGTGCTGCTC 184
Query 32377 AACGGTGCAGAAGGCATCGGAACGGGGT 32404
||||| || || |||||||| |||||||
Sbjct 183 AACGGCGCGGAGGGCATCGGCACGGGGT 156
Score = 131 bits (144), Expect = 2e-25
Identities = 259/381 (68%), Gaps = 2/381 (1%)
Strand=Plus/Minus
Query 31159 GAGCTCAAGAAAACAGATGGGTCCAAAAAGTCTCGAATTACGGGAATTCCGAAGCTCGAC 31218
||||| ||||| || ||| |||| ||||| | ||| ||||| |||||||||
Sbjct 1422 GAGCTGAAGAAGGGCGACGGGGCCAAGCGCTCTCGCGTGCTGGGCATTCCCAAGCTCGAC 1363
Query 31219 GACGCCAACTGGGCCGGTACCCACAAGTCGCACGAGTGCACGCTTATTATTACCGAGGGT 31278
||||| ||| || || | ||| || ||||||||| || || | ||||||||
Sbjct 1362 GACGCAAACGACGCGGGCGGGCGCAACTCCTCCGAGTGCACCCTCATCCTCACCGAGGGA 1303
Query 31279 GACTCGGCAAAGGCGCTTGCTATTGCTGGCTTGAGTGTTGTGGGGCGCAATGCGTTCGGG 31338
|||||||| ||| | || || | || ||| || || ||||| ||| || | |||
Sbjct 1302 GACTCGGCCAAGACTCTGGCCGTGGCGGGCCTGTCGGTGGTGGGCCGCGATCGCTACGGA 1243
Query 31339 GTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGACGCCTCCGTTAAACAGGTTACG 31398
||||| |||||||| ||||||| | ||||| || || || || | ||| | ||
Sbjct 1242 GTGTTCCCGCTCCGCGGCAAGCTCCTCAACGTGCGAGATGCTTCGGCGGCTCAGATCTCG 1183
Query 31399 GATAATGAAGAGTTTTCCAACCTGAAAAAGATCCTCGGGCTTCAGCATGGCAAGGTATAT 31458
| || | ||| || ||| | || ||||||| || || ||||| ||||||| ||
Sbjct 1182 GGCAACGCCGAGATTCAAAACATCAAGCAGATCCTGGGCCTGCAGCACGGCAAGGAGTAC 1123
Query 31459 AATTCACTGAGAGA-ATTGCGGTACGGTCGCCTCATGATTATGACCGACGCAGATCTCGA 31517
|| || | | | |||| ||||| | |||||||| ||||| || || | |||
Sbjct 1122 AA-CAACAGCGGCACGCTGCGCTACGGCCATCTCATGATCATGACGGATCAGGACCACGA 1064
Query 31518 CGGCAGTCACATCAAGGGTCT 31538
|||| ||||||||||||||
Sbjct 1063 CGGCTCCCACATCAAGGGTCT 1043
>seq3257
Length=1341
Score = 132 bits (146), Expect = 5e-26
Identities = 139/183 (76%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492
|||||||| || || || ||||| ||||| || | |||| ||| | ||||| ||
Sbjct 185 GGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACTATTGAAAACGTCAAGGCCAAG 126
Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552
|| |||||||||||||| |||||||| ||||||||||| || ||||| || || |||||
Sbjct 125 ATCCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGCCTGATTTTCGCGGGCAAGCAG 66
Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612
|| ||||||| || || || | ||||| || |||| ||||| || || ||||| ||
Sbjct 65 CTGGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCTACCCTTCACCTG 6
Query 27613 GTC 27615
|||
Sbjct 5 GTC 3
>seq55
Length=8980
Score = 118 bits (130), Expect = 1e-21
Identities = 125/164 (76%), Gaps = 3/164 (2%)
Strand=Plus/Minus
Query 27472 ATTGCA---AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAG 27528
|||||| ||| | ||||| || ||||||||||||||||| || || || |||||||||
Sbjct 4175 ATTGCAGAGAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 4116
Query 27529 CGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTC 27588
|| || || || || || ||||| || ||||| | || ||||| || ||||| || ||
Sbjct 4115 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCCGACTACAACATC 4056
Query 27589 CAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||||| ||||| || || || ||| | || || ||||| ||
Sbjct 4055 CAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTGCGCGGCGG 4012
>seq2314
Length=1923
Score = 87.8 bits (96), Expect = 2e-12
Identities = 116/161 (72%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 64705 TCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCA 64764
|| |||| ||||| || || ||||| || ||||| || || ||| || |
Sbjct 1843 TCCTTTGCGCAGCGCCTGCTGGCGTTTGCGTGCGTGGAGGGCATCCACTTCAGCGGCGCC 1784
Query 64765 TTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAAC 64824
||||| | || | |||||| |||||||| ||||| ||||| || || | ||||| |||
Sbjct 1783 TTCTGCGCCATCTACTGGCTCAAAAAGCGCGGCCTCATGCCGGGGCTCACCTTTTCCAAC 1724
Query 64825 GAGCTGATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGC 64865
||||| || |||||||||||||| || ||| || |||||
Sbjct 1723 GAGCTCATTTCTCGGGACGAGGGCCTGCACACCGACTTTGC 1683
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570270007765920
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