Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq114 210 2e-49 seq2724 176 5e-39 seq81 161 1e-34 seq3257 132 5e-26 seq55 118 1e-21 seq2314 87.8 2e-12 >seq114 Length=7431 Score = 210 bits (232), Expect = 2e-49 Identities = 509/765 (67%), Gaps = 17/765 (2%) Strand=Plus/Plus Query 80908 GACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCAC 80967 || || || |||||||||||| ||| || | | || |||||||||| || |||||| Sbjct 844 GAGGCGAGGTTGCACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACGATCTCGGTGCAC 903 Query 80968 AAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCC 81027 | || |||| || || |||||||| | |||||| |||||||||||| |||||| Sbjct 904 AGGTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCGTTGCAGGCGTCC 963 Query 81028 TTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATC 81087 ||||| |||||| || || || ||||| ||| | || | |||||| ||| | | Sbjct 964 TTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGCCTCCAAAATGGCGAACCACAGC 1023 Query 81088 T----CGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AG 81142 | ||||||| | | | ||||| ||| ||| | | ||| ||||| || Sbjct 1024 TGCTGCGCGCGCATCGTC----TTGCGCGCGCGGCCCTCGCGCTCGTACCGCGCGTAGAG 1079 Query 81143 CTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCA 81202 | | || |||| || || | || | ||| | || |||||| ||||| | || Sbjct 1080 CGAC-TCAAACTCGGGGCCCCACACGTCCGCCAGGCCCGGCGCCTCGTTGGGGCAGAACA 1138 Query 81203 GGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGG 81262 || ||| | ||| ||| || |||||| || ||| |||||||| || || Sbjct 1139 GGCTCCACTGCCCGTCCGCCTCGACGCGCTTCATAAACAGGTCGGGGATCCACAGCCCGT 1198 Query 81263 TGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGT 81322 ||||||||||||| ||| |||||||| | || ||||| ||||| || || ||| Sbjct 1199 AGAACAGGTCGCGGGCGCGAGCCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCCAGCCAGT 1258 Query 81323 CCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGC 81379 |||| | |||||| ||||| |||||||| ||||| || | | |||||||| | || Sbjct 1259 CCATCACGTCCGCGTGCCAGGGCTCCAGGTACACCGCAAAGGCGCCCTTGCGCTTGCCGC 1318 Query 81380 CACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCAT 81439 | ||||||| ||||| || || || |||| || || |||| ||| || | | || | Sbjct 1319 CGCCCTGGTCCACGTACCGAGCCGTGTCGTTGAACACGCGCAGCATGGGCACCACGCCGT 1378 Query 81440 CTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAA 81499 | ||||| || ||| ||| ||||||| ||||||| | | | || | Sbjct 1379 TGCTCGTGCCGTTGGTGCCCCGGATGTACGACCCCGTGGCGCGGATGTCGTGCATGTGCA 1438 Query 81500 GACCGATGCCACCTGACCACTT--TGAAATCTGAGCACACCGGTTCATGGTCTCATAAAT 81557 | |||||||| || | | ||| ||| | | |||| || || | || || || || Sbjct 1439 GCCCGATGCCGCCCGCGCTCTTGCTGATGGCCGCGCACTCC--TTGAGCGTGTCGTAGAT 1496 Query 81558 TCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTT 81617 ||||||||||| || |||||| | | ||| || ||||| || ||| |||| Sbjct 1497 GCCCTCGATGCTGTCGCCCTTCATGGCCACCAAAAAGCAGCTGCTCAGCTGCGGGCGGGG 1556 Query 81618 TGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACG 81662 | ||| || ||||| || || || | |||||| |||| |||| Sbjct 1557 GGTGCCCGCGTTGAAGAGCGTCGGCGACGCGTGCGTGAACCAACG 1601 Score = 172 bits (190), Expect = 6e-38 Identities = 368/541 (68%), Gaps = 14/541 (3%) Strand=Plus/Plus Query 80304 CCAGA-CACCAAGCTTGTGCAGATCTTTCACAAGGTGCTTGTTAATCATGACAAACTCTC 80362 ||||| | ||| || ||| || || | || ||||| | ||| | || | ||||| | Sbjct 183 CCAGAGCCCCAGGCGCGTG-AGGTCGTGCAGCAGGTGGTGGTTGACCACGGTGAACTCGC 241 Query 80363 CCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTC 80422 ||| ||| ||| |||| || | ||| | ||||| ||||| || ||||||||| | Sbjct 242 CCGAGAGCACGCGGCGCACGTAGATGTTGCTGGTGTAGGGCTCGAAGCACTCGTTGTTGC 301 Query 80423 CGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGC 80482 | | |||||| ||||||||||| ||||| || | |||| ||| || || ||||| | Sbjct 302 CCAAGATCTGGCTGGTGCTCGCCGTGGGCATGGGCGCCACCAGCAGCGAGTTGCGCAGCC 361 Query 80483 CGTGCTTCTTGATATCCTCGCGCAAATCTGACCAAAAATCAACCCCAACGCTGTGAC--- 80539 |||||| | | |||||| | ||| || | || | ||| | | Sbjct 362 CGTGCTCGCGCACGGTCGCGCGCAGGGCCTCCCAGTCC-CACCGCCCGCTCTGGGGCGTC 420 Query 80540 ----CCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCG 80595 |||||| ||||||||||| |||||| |||||||||||||| ||| | |||||| Sbjct 421 ACGCCCCACAGGTCGTGCTGCAGCTTGCCCTGGGACGCCGGAGACCCGGCGTAGGTCTCG 480 Query 80596 TACGGGCCCTC-CGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCA 80654 ||||| || || || | ||| ||||| ||||| || || |||| || | | Sbjct 481 TACGGCCCGTCGCGGCG-GGCGAGCTCGCACGAGGTGCGCAGCGCGGCGTAGTAGACGGT 539 Query 80655 CTCAAAGACGCCCTTGTTCACACCGCGCG-CCTGTGGGTCGTCGAACGACAAGCCCATCA 80713 ||| |||| | | ||| | | ||||| ||| || |||| || | || ||||| || Sbjct 540 CTCGAAGATGTCGCGGTTGAG-CTGCGCGGCCTCGGGCCCGTCAAAGGGCATGCCCAGCA 598 Query 80714 TCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCG 80773 ||||| |||| ||||||||||| ||||| | | |||| |||||||| || ||| Sbjct 599 GGATGAAGGCGTCGGCCAGGCCCTGCACGCCCAGGCCGATGGGGCGGTGCCGGAGGTTGC 658 Query 80774 ATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTG 80833 ||||||||| | || | ||||| ||| ||||||| ||||||||||||||| | Sbjct 659 TGCGCTCGGCCGCGGGGACGGGGTAGTGGTTGACGTCGATGATGCGGTTCAGGTTGCGCG 718 Query 80834 T 80834 | Sbjct 719 T 719 >seq2724 Length=1646 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||||||| || |||||||| || || || ||||| ||||| Sbjct 1535 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCG 1476 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || |||||||||||||| |||||||| |||||| Sbjct 1475 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAG 1416 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| || || ||||| || ||||||| || || || | ||||| || Sbjct 1415 CAGCGCCTGATTTTCGCGGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAAC 1356 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || |||||||| ||| | ||||| ||||| || Sbjct 1355 ATCCAGAAGGAGTCTACCCTTCATCTGGTCCTCCGTCTGCGCGGCGG 1309 >seq81 Length=8194 Score = 161 bits (178), Expect = 1e-34 Identities = 307/448 (69%), Gaps = 8/448 (2%) Strand=Plus/Minus Query 31961 AGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACG 32020 |||| ||||| || || | |||||| ||||| || ||||||||| | | | | Sbjct 599 AGCGCTCCATCCCCAGCGCCGTGGACGGGCTCAAACCCGGGCAGCGCAAGATCCTGTTTG 540 Query 32021 CCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGG 32080 ||||| ||||| |||||| || ||||| ||||| ||||||||| |||||||||||| Sbjct 539 CCTGCTTCAAGCGCAACCTGAAGAAGGACATCAAGGTCGCGCAGCTGGCGGGCTACGTGG 480 Query 32081 CAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTG 32140 | ||| | | || || || ||||||||| | || ||| ||||||||| || ||| | Sbjct 479 CGGAGAAGAGCGCGTACCATCACGGCGAGACCTCCCTCATGGGCACCATCGTGGGCCTAG 420 Query 32141 CTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGA 32200 | ||| ||||||| || | || ||| | |||| || | ||| || |||||||| | Sbjct 419 CCCAGGACTTTGTGGGCTCCAACAACGTCAACTACCTGGTGCCGCAGGGTCAGTTTGGCA 360 Query 32201 CCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGCAC 32260 | || || || |||||||| || || ||| | || ||||||||||| || || || Sbjct 359 CGCGCCTGCAGGGCGGCAAGGACGCCGCCAGCGCGCGCTACATCTTCACGCGCCTGGCCG 300 Query 32261 CTTCGACGCGCAAGAT-TTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTT---T 32316 | | ||||| | |||| ||| | ||||| | | |||| | ||| | Sbjct 299 CCGTGGCGCGCCGCCTCTTTCCCGCCG-CCGACGACGTGCTGCT---GCGCAACCTGGCG 244 Query 32317 GATGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTG 32376 || || || ||| ||||||||| || ||| || | || |||| | | || | Sbjct 243 GAGGAGGGACAGGTCATCGAGCCGGAGTGGTACGTGCCCATTCTGCCGACGGTGCTGCTC 184 Query 32377 AACGGTGCAGAAGGCATCGGAACGGGGT 32404 ||||| || || |||||||| ||||||| Sbjct 183 AACGGCGCGGAGGGCATCGGCACGGGGT 156 Score = 131 bits (144), Expect = 2e-25 Identities = 259/381 (68%), Gaps = 2/381 (1%) Strand=Plus/Minus Query 31159 GAGCTCAAGAAAACAGATGGGTCCAAAAAGTCTCGAATTACGGGAATTCCGAAGCTCGAC 31218 ||||| ||||| || ||| |||| ||||| | ||| ||||| ||||||||| Sbjct 1422 GAGCTGAAGAAGGGCGACGGGGCCAAGCGCTCTCGCGTGCTGGGCATTCCCAAGCTCGAC 1363 Query 31219 GACGCCAACTGGGCCGGTACCCACAAGTCGCACGAGTGCACGCTTATTATTACCGAGGGT 31278 ||||| ||| || || | ||| || ||||||||| || || | |||||||| Sbjct 1362 GACGCAAACGACGCGGGCGGGCGCAACTCCTCCGAGTGCACCCTCATCCTCACCGAGGGA 1303 Query 31279 GACTCGGCAAAGGCGCTTGCTATTGCTGGCTTGAGTGTTGTGGGGCGCAATGCGTTCGGG 31338 |||||||| ||| | || || | || ||| || || ||||| ||| || | ||| Sbjct 1302 GACTCGGCCAAGACTCTGGCCGTGGCGGGCCTGTCGGTGGTGGGCCGCGATCGCTACGGA 1243 Query 31339 GTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGACGCCTCCGTTAAACAGGTTACG 31398 ||||| |||||||| ||||||| | ||||| || || || || | ||| | || Sbjct 1242 GTGTTCCCGCTCCGCGGCAAGCTCCTCAACGTGCGAGATGCTTCGGCGGCTCAGATCTCG 1183 Query 31399 GATAATGAAGAGTTTTCCAACCTGAAAAAGATCCTCGGGCTTCAGCATGGCAAGGTATAT 31458 | || | ||| || ||| | || ||||||| || || ||||| ||||||| || Sbjct 1182 GGCAACGCCGAGATTCAAAACATCAAGCAGATCCTGGGCCTGCAGCACGGCAAGGAGTAC 1123 Query 31459 AATTCACTGAGAGA-ATTGCGGTACGGTCGCCTCATGATTATGACCGACGCAGATCTCGA 31517 || || | | | |||| ||||| | |||||||| ||||| || || | ||| Sbjct 1122 AA-CAACAGCGGCACGCTGCGCTACGGCCATCTCATGATCATGACGGATCAGGACCACGA 1064 Query 31518 CGGCAGTCACATCAAGGGTCT 31538 |||| |||||||||||||| Sbjct 1063 CGGCTCCCACATCAAGGGTCT 1043 >seq3257 Length=1341 Score = 132 bits (146), Expect = 5e-26 Identities = 139/183 (76%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 |||||||| || || || ||||| ||||| || | |||| ||| | ||||| || Sbjct 185 GGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACTATTGAAAACGTCAAGGCCAAG 126 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || |||||||||||||| |||||||| ||||||||||| || ||||| || || ||||| Sbjct 125 ATCCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGCCTGATTTTCGCGGGCAAGCAG 66 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 || ||||||| || || || | ||||| || |||| ||||| || || ||||| || Sbjct 65 CTGGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCTACCCTTCACCTG 6 Query 27613 GTC 27615 ||| Sbjct 5 GTC 3 >seq55 Length=8980 Score = 118 bits (130), Expect = 1e-21 Identities = 125/164 (76%), Gaps = 3/164 (2%) Strand=Plus/Minus Query 27472 ATTGCA---AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAG 27528 |||||| ||| | ||||| || ||||||||||||||||| || || || ||||||||| Sbjct 4175 ATTGCAGAGAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 4116 Query 27529 CGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTC 27588 || || || || || || ||||| || ||||| | || ||||| || ||||| || || Sbjct 4115 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCCGACTACAACATC 4056 Query 27589 CAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||| ||||| || || || ||| | || || ||||| || Sbjct 4055 CAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTGCGCGGCGG 4012 >seq2314 Length=1923 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 64705 TCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCA 64764 || |||| ||||| || || ||||| || ||||| || || ||| || | Sbjct 1843 TCCTTTGCGCAGCGCCTGCTGGCGTTTGCGTGCGTGGAGGGCATCCACTTCAGCGGCGCC 1784 Query 64765 TTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAAC 64824 ||||| | || | |||||| |||||||| ||||| ||||| || || | ||||| ||| Sbjct 1783 TTCTGCGCCATCTACTGGCTCAAAAAGCGCGGCCTCATGCCGGGGCTCACCTTTTCCAAC 1724 Query 64825 GAGCTGATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGC 64865 ||||| || |||||||||||||| || ||| || ||||| Sbjct 1723 GAGCTCATTTCTCGGGACGAGGGCCTGCACACCGACTTTGC 1683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570270007765920