Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq2296 214 1e-50 seq74 91.5 1e-13 >seq2296 Length=1937 Score = 214 bits (236), Expect = 1e-50 Identities = 459/679 (68%), Gaps = 14/679 (2%) Strand=Plus/Plus Query 29859 TCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGT 29918 ||| |||||| ||| || || || |||| | ||||||||| ||||| || ||| Sbjct 88 TCTGGAGCTGTTCCTTGAGGGGCTCGACGTGGTTGGCGTAGACGTGGGCGTCGCCGAGGA 147 Query 29919 TGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAG 29978 ||| | |||||| || || || ||| ||| || || | |||| |||||||| | Sbjct 148 CGTGAAAAAACTCCCCTGGGCGGAGGCCGCAGACCTGGGCGAGCATGCGGGTGAGGAGGG 207 Query 29979 AGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCT 30038 |||| |||||||| ||||| || || || || | ||| |||| | |||||| | Sbjct 208 CGTAGGAAGCGATGTTGAAGGGCACGCCCAGGCCGAGGTCTGCCGAGCGCTGGTACATGG 267 Query 30039 GACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAG 30098 || ||||||||||| | |||| | ||||| | ||||||| || || || | Sbjct 268 AGCAGGAGAGCTCTCCCCGGGCCACGAAGAACTGGGCGAGCACGTGGCAGGGCGGCAGGG 327 Query 30099 CCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGT 30158 |||| | | | | |||||||||||||||| | | | ||||| ||| |||| Sbjct 328 CCATTTGCGGGATGGCGGTGGGGTTCCAGGCGCAGAGCAGCAGGCGCCGGTCGCAGGGGT 387 Query 30159 TGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 30218 || || ||||| ||| || || | ||| ||||| ||| ||| | ||||| | Sbjct 388 TGGTCTTGATGCGGTGGACTAGGTCGGCAACCTGGTCCACGCCCTGCCCGGCATAGTCGG 447 Query 30219 CCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCA 30278 | |||||| | ||| | || || || || | |||||| || |||||||| || |||| Sbjct 448 CGTGCATGTCGGCGTAGGCGGCGCCAAAGTGGCGCCACTGAAAGCCGTACACGGGCCCCA 507 Query 30279 GGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 30338 ||| ||||| || | ||||| | |||| | ||||| ||| | | ||| |||||| Sbjct 508 AGTCGCCCTCCTCGCGGTGCTGCAGGCCCAGCGAGTCCAGAAAAGCGCGGGATCCGTTGC 567 Query 30339 CGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCT-TTGGAGTTTGTGGACCCTCTGACG 30397 ||||||| || || ||||| | ||| ||| |||| || ||||| || | | Sbjct 568 CGTCCCAAATGCCCACGCCCTTGGCCTTGAG-TCTGTTGGCGTCGGTGGAGCCCGCCAGG 626 Query 30398 AACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGA 30457 ||||| |||||||| ||||| ||| | ||| || || | |||||| || || || ||| Sbjct 627 AACCAGAGCAGCTCTTCCACCACGCCGCGCCAGAACACGCGCTTGGTGGTAAGCAGCGGA 686 Query 30458 AA-CTGTCCC-----TTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCCC 30511 || |||| || |||| || | ||| || | ||||||||| | || |||| Sbjct 687 AAGCTGTGCCGCAGGTTGAAGC---GCATGG--TGCG-ACCAAACACCGCCAGCGTTCCC 740 Query 30512 GTGCCCGTCCTGTCTCCCC 30530 ||||| |||| ||||||| Sbjct 741 GTGCCGGTCCGATCTCCCC 759 >seq74 Length=8418 Score = 91.5 bits (100), Expect = 1e-13 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 52770 GGCGACAAGTTTGCGTCGTT-CACGGCGCAAAAGGGGACGTGCGGAGCCGTCCTGACCCA 52828 |||||||||||||| ||| ||||| |||||||| || ||| | | ||||| Sbjct 6366 GGCGACAAGTTTGCCTCGAGACACGGA-CAAAAGGGCACCATCGGCATCACCTACACCCA 6424 Query 52829 GGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGC 52888 |||||||||||| || | | | || | ||||||||||||||||||||||||||||| Sbjct 6425 GGAGGACATGCCTTTTTCCGCGCAGGGCATCGTGCCCGACCTCATCATCAACCCCCACGC 6484 Query 52889 CTTTCCCTCCAGGATGACC 52907 | | ||||| | |||||| Sbjct 6485 CATCCCCTCGCGCATGACC 6503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406282342489272