Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_028906.1 Length=75933 Score E Sequences producing significant alignments: (Bits) Value seq152 129 3e-25 >seq152 Length=7042 Score = 129 bits (142), Expect = 3e-25 Identities = 243/355 (68%), Gaps = 2/355 (1%) Strand=Plus/Plus Query 66509 GGGGGGTACCCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCA 66568 || || ||||| |||||| | ||||| ||||||||||| || || |||||| | Sbjct 4533 GGCGGCTACCCCGTGGGCCGCATCGTGGAGATCTACGGCCCCGAGTCGAGCGGGAAGACG 4592 Query 66569 ACTCTGTGTCTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATC 66628 || ||| || ||||| ||||| | | ||||| ||| ||||| || | ||| Sbjct 4593 ACGCTGGCGCTGCACGCCATGGCCGAGGTGCAGAGACGCGGAGGCAAGTGCGTTTTGATC 4652 Query 66629 GACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTG-TGGACCTCGACAA 66687 ||||| |||||| | | ||||| | | || | | ||| ||| | ||||| | ||| Sbjct 4653 GACGCCGAGCACGCGTTCGACCCGGTATTCG-CGCGTCGCGCGGGGCTGGACGTGGACGC 4711 Query 66688 CCTCGTGGTGGTTCAGCCCGATACCGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGT 66747 ||| || |||||||| ||||||| ||| |||||||||| ||| ||| | Sbjct 4712 GCTCTACCTGAGCCAGCCCGACTGCGGCGAGGCGGCGCTGGAGATCGCGGACAACCTGAT 4771 Query 66748 CAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCCGTGGCGGCCCTGGTGCCGCGCGC 66807 | || || | || ||| |||| ||| ||||| |||||||| ||||| ||||| || Sbjct 4772 CCGCTCCGGGGGCGTGGACATGGTCGCCGTCGACTCGGTGGCGGCGCTGGTCCCGCGAGC 4831 Query 66808 CGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATG 66862 |||| | || ||||| |||||| | || || ||| || |||||||| ||| Sbjct 4832 CGAGATAGAGGGCGAGATCGGGCAGCTGCAGGTGGGCGCCCAGGCGCGCCTGATG 4886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242844029399244