Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq2296 187 2e-42
>seq2296
Length=1937
Score = 187 bits (206), Expect = 2e-42
Identities = 395/583 (68%), Gaps = 6/583 (1%)
Strand=Plus/Plus
Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675
||| || |||| |||| ||||| || ||||| ||| |||||||| ||||| || |
Sbjct 179 GACCTGGGCGAGCATGCGGGTGAGGAGGGCGTAGGAAGCGATGTTGAAGGGCACGCCCAG 238
Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735
|| | |||| |||| || || || | |||||| ||||| || || ||| ||||
Sbjct 239 GCCGAGGTCTGCCGAGCGCTGGTACATGGAGCAGGAGAGCTCTCCCCGGGCCACGAAGAA 298
Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGC 6795
||| ||| |||||| || || || ||||| | |||| | | |||||||| ||
Sbjct 299 CTGGGCGAGCACGTGGCAGGGCGGCAGGGCCATTTGCGGGATGGCGGTGGGGTTCCAGGC 358
Query 6796 GCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAG 6855
||| | || | | | ||| ||||| ||| | | || || | || | |||
Sbjct 359 GCAGAGCAGCAGGCGCCGGTCGCAGGGGTTGGTCTTGATGCGGTGGACTAGGT-CGGCAA 417
Query 6856 C-TGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGT 6914
| |||||| | ||||| || | |||||| || | | | || | || |||||||
Sbjct 418 CCTGGTCCACGCCCTGCCCGGCATAGTCGGCGTGCATGTCGGCGTAGGCGGCGCCAAAGT 477
Query 6915 GTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCC 6974
| | |||||| || ||||| || || ||||||||||||||||| || | | |||
Sbjct 478 GGCGCCACTGAAAGCCGTACACGGGCCCCAAGTCGCCCTCCTCGCGGTGCTGCAGGCCCA 537
Query 6975 GCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGA 7034
|| ||||||||| | || || |||| ||||||| || ||| ||| || | ||
Sbjct 538 GCGAGTCCAGAAAAGCGCGGGATCCGTTGCCGTCCCAAATGCCCACGCCCTTGGCCTTGA 597
Query 7035 GCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCC 7094
| |||| || |||| ||| || |||||| |||||||| || |||||||| ||
Sbjct 598 GTCTGTTGGCGTCGGTGGAGCCCGCCAGGAACCAGAGCAGCTCTTCCACCACGCCGCGCC 657
Query 7095 AGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTATCGGGCCT-GT 7153
|| |||| || || || || ||||||||||| | ||| |||||| | | || | ||
Sbjct 658 AGAACACGCGCTTGGTGGTAAGCAGCGGAAAGCTGTGCCGCAGGTTGAA--GCGCATGGT 715
Query 7154 GTG-CCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCC 7195
| | || ||||| | || || ||||| |||||||| || |||
Sbjct 716 GCGACCAAACACCGCCAGCGTTCCCGTGCCGGTCCGATCTCCC 758
Score = 187 bits (206), Expect = 2e-42
Identities = 395/583 (68%), Gaps = 6/583 (1%)
Strand=Plus/Minus
Query 34150 GGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGG-CACAC-AGGCCCGATACAAC 34207
||| || |||||||| ||||| || || | ||||| || | ||| | || | | ||||
Sbjct 758 GGGAGATCGGACCGGCACGGGAACGCTGGCGGTGTTTGGTCGCACCATGCGC--TTCAAC 701
Query 34208 CTTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAG 34267
|| ||| | ||||||||||| || || || || |||| |||| |||||||| ||
Sbjct 700 CTGCGGCACAGCTTTCCGCTGCTTACCACCAAGCGCGTGTTCTGGCGCGGCGTGGTGGAA 641
Query 34268 GAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTG 34327
|||||||| |||||| || ||| |||| || |||| ||| | || ||| |||
Sbjct 640 GAGCTGCTCTGGTTCCTGGCGGGCTCCACCGACGCCAACAGACTCAAGGCCAAGGGCGTG 581
Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGG 34387
|| ||||||| |||| || || | ||||||||| || ||| | | ||
Sbjct 580 GGCATTTGGGACGGCAACGGATCCCGCGCTTTTCTGGACTCGCTGGGCCTGCAGCACCGC 521
Query 34388 GAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447
||||||||||||||||| || || ||||| || |||||| | |||||||| || | ||
Sbjct 520 GAGGAGGGCGACTTGGGGCCCGTGTACGGCTTTCAGTGGCGCCACTTTGGCGCCGCCTAC 461
Query 34448 CGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCA-GCTGCAGTACGTGATCGA 34506
| | | || |||||| | || ||||| | |||||| | ||| | || | || |
Sbjct 460 GCCGACATGCACGCCGACTATGCCGGGCAGGGCGTGGACCAGGTTGCCG-ACCTAGTCCA 402
Query 34507 CACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGA 34566
| | | ||| ||||| ||| | | | || | ||||| |||||||| | |
Sbjct 401 CCGCATCAAGACCAACCCCTGCGACCGGCGCCTGCTGCTCTGCGCCTGGAACCCCACCGC 342
Query 34567 TCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGG 34626
|||| | ||||| || || || |||||| ||| ||| |||| ||| || ||
Sbjct 341 CATCCCGCAAATGGCCCTGCCGCCCTGCCACGTGCTCGCCCAGTTCTTCGTGGCCCGGGG 282
Query 34627 GGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAA 34686
||||| |||||| | || || || |||| |||| | || | || ||||| |||||
Sbjct 281 AGAGCTCTCCTGCTCCATGTACCAGCGCTCGGCAGACCTCGGCCTGGGCGTGCCCTTCAA 222
Query 34687 CATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729
||| ||| ||||| || ||||| |||| |||| || |||
Sbjct 221 CATCGCTTCCTACGCCCTCCTCACCCGCATGCTCGCCCAGGTC 179
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448230651815520
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