Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2296 187 2e-42 >seq2296 Length=1937 Score = 187 bits (206), Expect = 2e-42 Identities = 395/583 (68%), Gaps = 6/583 (1%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 ||| || |||| |||| ||||| || ||||| ||| |||||||| ||||| || | Sbjct 179 GACCTGGGCGAGCATGCGGGTGAGGAGGGCGTAGGAAGCGATGTTGAAGGGCACGCCCAG 238 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 || | |||| |||| || || || | |||||| ||||| || || ||| |||| Sbjct 239 GCCGAGGTCTGCCGAGCGCTGGTACATGGAGCAGGAGAGCTCTCCCCGGGCCACGAAGAA 298 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGC 6795 ||| ||| |||||| || || || ||||| | |||| | | |||||||| || Sbjct 299 CTGGGCGAGCACGTGGCAGGGCGGCAGGGCCATTTGCGGGATGGCGGTGGGGTTCCAGGC 358 Query 6796 GCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAG 6855 ||| | || | | | ||| ||||| ||| | | || || | || | ||| Sbjct 359 GCAGAGCAGCAGGCGCCGGTCGCAGGGGTTGGTCTTGATGCGGTGGACTAGGT-CGGCAA 417 Query 6856 C-TGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGT 6914 | |||||| | ||||| || | |||||| || | | | || | || ||||||| Sbjct 418 CCTGGTCCACGCCCTGCCCGGCATAGTCGGCGTGCATGTCGGCGTAGGCGGCGCCAAAGT 477 Query 6915 GTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCC 6974 | | |||||| || ||||| || || ||||||||||||||||| || | | ||| Sbjct 478 GGCGCCACTGAAAGCCGTACACGGGCCCCAAGTCGCCCTCCTCGCGGTGCTGCAGGCCCA 537 Query 6975 GCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGA 7034 || ||||||||| | || || |||| ||||||| || ||| ||| || | || Sbjct 538 GCGAGTCCAGAAAAGCGCGGGATCCGTTGCCGTCCCAAATGCCCACGCCCTTGGCCTTGA 597 Query 7035 GCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCC 7094 | |||| || |||| ||| || |||||| |||||||| || |||||||| || Sbjct 598 GTCTGTTGGCGTCGGTGGAGCCCGCCAGGAACCAGAGCAGCTCTTCCACCACGCCGCGCC 657 Query 7095 AGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTATCGGGCCT-GT 7153 || |||| || || || || ||||||||||| | ||| |||||| | | || | || Sbjct 658 AGAACACGCGCTTGGTGGTAAGCAGCGGAAAGCTGTGCCGCAGGTTGAA--GCGCATGGT 715 Query 7154 GTG-CCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCC 7195 | | || ||||| | || || ||||| |||||||| || ||| Sbjct 716 GCGACCAAACACCGCCAGCGTTCCCGTGCCGGTCCGATCTCCC 758 Score = 187 bits (206), Expect = 2e-42 Identities = 395/583 (68%), Gaps = 6/583 (1%) Strand=Plus/Minus Query 34150 GGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGG-CACAC-AGGCCCGATACAAC 34207 ||| || |||||||| ||||| || || | ||||| || | ||| | || | | |||| Sbjct 758 GGGAGATCGGACCGGCACGGGAACGCTGGCGGTGTTTGGTCGCACCATGCGC--TTCAAC 701 Query 34208 CTTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAG 34267 || ||| | ||||||||||| || || || || |||| |||| |||||||| || Sbjct 700 CTGCGGCACAGCTTTCCGCTGCTTACCACCAAGCGCGTGTTCTGGCGCGGCGTGGTGGAA 641 Query 34268 GAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTG 34327 |||||||| |||||| || ||| |||| || |||| ||| | || ||| ||| Sbjct 640 GAGCTGCTCTGGTTCCTGGCGGGCTCCACCGACGCCAACAGACTCAAGGCCAAGGGCGTG 581 Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGG 34387 || ||||||| |||| || || | ||||||||| || ||| | | || Sbjct 580 GGCATTTGGGACGGCAACGGATCCCGCGCTTTTCTGGACTCGCTGGGCCTGCAGCACCGC 521 Query 34388 GAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447 ||||||||||||||||| || || ||||| || |||||| | |||||||| || | || Sbjct 520 GAGGAGGGCGACTTGGGGCCCGTGTACGGCTTTCAGTGGCGCCACTTTGGCGCCGCCTAC 461 Query 34448 CGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCA-GCTGCAGTACGTGATCGA 34506 | | | || |||||| | || ||||| | |||||| | ||| | || | || | Sbjct 460 GCCGACATGCACGCCGACTATGCCGGGCAGGGCGTGGACCAGGTTGCCG-ACCTAGTCCA 402 Query 34507 CACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGA 34566 | | | ||| ||||| ||| | | | || | ||||| |||||||| | | Sbjct 401 CCGCATCAAGACCAACCCCTGCGACCGGCGCCTGCTGCTCTGCGCCTGGAACCCCACCGC 342 Query 34567 TCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGG 34626 |||| | ||||| || || || |||||| ||| ||| |||| ||| || || Sbjct 341 CATCCCGCAAATGGCCCTGCCGCCCTGCCACGTGCTCGCCCAGTTCTTCGTGGCCCGGGG 282 Query 34627 GGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAA 34686 ||||| |||||| | || || || |||| |||| | || | || ||||| ||||| Sbjct 281 AGAGCTCTCCTGCTCCATGTACCAGCGCTCGGCAGACCTCGGCCTGGGCGTGCCCTTCAA 222 Query 34687 CATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 ||| ||| ||||| || ||||| |||| |||| || ||| Sbjct 221 CATCGCTTCCTACGCCCTCCTCACCCGCATGCTCGCCCAGGTC 179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448230651815520