Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq2296 159 3e-34
>seq2296
Length=1937
Score = 159 bits (176), Expect = 3e-34
Identities = 399/610 (65%), Gaps = 3/610 (0%)
Strand=Plus/Plus
Query 29631 TCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGG 29690
||| |||||| | | || || || ||||||| ||||||||| || || || |||
Sbjct 88 TCTGGAGCTGTTCCTTGAGGGGCTCGACGTGGTTGGCGTAGACGTGGGCGTCGCCGAGGA 147
Query 29691 TGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAG 29750
||| | |||||| || || || ||| ||| || || | |||| |||||||| |
Sbjct 148 CGTGAAAAAACTCCCCTGGGCGGAGGCCGCAGACCTGGGCGAGCATGCGGGTGAGGAGGG 207
Query 29751 AGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCT 29810
|||| |||||||| |||||||| || || || | ||| | || | |||||| |
Sbjct 208 CGTAGGAAGCGATGTTGAAGGGCACGCCCAGGCCGAGGTCTGCCGAGCGCTGGTACATGG 267
Query 29811 GGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGG 29870
||| ||||||||||| | |||| | ||||| | | ||||| || || ||||
Sbjct 268 AGCAGGAGAGCTCTCCCCGGGCCACGAAGAACTGGGCGAGCACGTGGCAGGGCGGCAGGG 327
Query 29871 CCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGT 29930
|||| | | | | ||||||||||||| || | | | ||||| ||| ||||
Sbjct 328 CCATTTGCGGGATGGCGGTGGGGTTCCAGGCGCAGAGCAGCAGGCGCCGGTCGCAGGGGT 387
Query 29931 TGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 29990
|| || ||||| ||| || || | ||| ||||| ||| ||| | ||||| |
Sbjct 388 TGGTCTTGATGCGGTGGACTAGGTCGGCAACCTGGTCCACGCCCTGCCCGGCATAGTCGG 447
Query 29991 NNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCA 30050
| || || | |||||| || |||||||| || ||||
Sbjct 448 CGTGCATGTCGGCGTAGGCGGCGCCAAAGTGGCGCCACTGAAAGCCGTACACGGGCCCCA 507
Query 30051 GGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 30110
||| ||||| || | ||||| | |||| | ||||| ||| | | ||| ||||||
Sbjct 508 AGTCGCCCTCCTCGCGGTGCTGCAGGCCCAGCGAGTCCAGAAAAGCGCGGGATCCGTTGC 567
Query 30111 CGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCT-TTGGAGTTTGTGGACCCTCTGACG 30169
||||||| || || ||||| | ||| ||| |||| || ||||| || | |
Sbjct 568 CGTCCCAAATGCCCACGCCCTTGGCCTTGAG-TCTGTTGGCGTCGGTGGAGCCCGCCAGG 626
Query 30170 AACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGA 30229
||||| |||||||| ||||| ||| | ||| || || | |||||| || || || |||
Sbjct 627 AACCAGAGCAGCTCTTCCACCACGCCGCGCCAGAACACGCGCTTGGTGGTAAGCAGCGGA 686
Query 30230 AA-CTGTCCC 30238
|| |||| ||
Sbjct 687 AAGCTGTGCC 696
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406135152654076
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |