Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq2296 159 3e-34 >seq2296 Length=1937 Score = 159 bits (176), Expect = 3e-34 Identities = 399/610 (65%), Gaps = 3/610 (0%) Strand=Plus/Plus Query 29631 TCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGG 29690 ||| |||||| | | || || || ||||||| ||||||||| || || || ||| Sbjct 88 TCTGGAGCTGTTCCTTGAGGGGCTCGACGTGGTTGGCGTAGACGTGGGCGTCGCCGAGGA 147 Query 29691 TGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAG 29750 ||| | |||||| || || || ||| ||| || || | |||| |||||||| | Sbjct 148 CGTGAAAAAACTCCCCTGGGCGGAGGCCGCAGACCTGGGCGAGCATGCGGGTGAGGAGGG 207 Query 29751 AGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCT 29810 |||| |||||||| |||||||| || || || | ||| | || | |||||| | Sbjct 208 CGTAGGAAGCGATGTTGAAGGGCACGCCCAGGCCGAGGTCTGCCGAGCGCTGGTACATGG 267 Query 29811 GGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGG 29870 ||| ||||||||||| | |||| | ||||| | | ||||| || || |||| Sbjct 268 AGCAGGAGAGCTCTCCCCGGGCCACGAAGAACTGGGCGAGCACGTGGCAGGGCGGCAGGG 327 Query 29871 CCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGT 29930 |||| | | | | ||||||||||||| || | | | ||||| ||| |||| Sbjct 328 CCATTTGCGGGATGGCGGTGGGGTTCCAGGCGCAGAGCAGCAGGCGCCGGTCGCAGGGGT 387 Query 29931 TGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 29990 || || ||||| ||| || || | ||| ||||| ||| ||| | ||||| | Sbjct 388 TGGTCTTGATGCGGTGGACTAGGTCGGCAACCTGGTCCACGCCCTGCCCGGCATAGTCGG 447 Query 29991 NNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCA 30050 | || || | |||||| || |||||||| || |||| Sbjct 448 CGTGCATGTCGGCGTAGGCGGCGCCAAAGTGGCGCCACTGAAAGCCGTACACGGGCCCCA 507 Query 30051 GGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 30110 ||| ||||| || | ||||| | |||| | ||||| ||| | | ||| |||||| Sbjct 508 AGTCGCCCTCCTCGCGGTGCTGCAGGCCCAGCGAGTCCAGAAAAGCGCGGGATCCGTTGC 567 Query 30111 CGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCT-TTGGAGTTTGTGGACCCTCTGACG 30169 ||||||| || || ||||| | ||| ||| |||| || ||||| || | | Sbjct 568 CGTCCCAAATGCCCACGCCCTTGGCCTTGAG-TCTGTTGGCGTCGGTGGAGCCCGCCAGG 626 Query 30170 AACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGA 30229 ||||| |||||||| ||||| ||| | ||| || || | |||||| || || || ||| Sbjct 627 AACCAGAGCAGCTCTTCCACCACGCCGCGCCAGAACACGCGCTTGGTGGTAAGCAGCGGA 686 Query 30230 AA-CTGTCCC 30238 || |||| || Sbjct 687 AAGCTGTGCC 696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406135152654076