Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq2296 205 7e-48 >seq2296 Length=1937 Score = 205 bits (226), Expect = 7e-48 Identities = 457/679 (67%), Gaps = 14/679 (2%) Strand=Plus/Plus Query 27125 TCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGG 27184 ||| |||||| ||| || || || ||||| | ||||||||| ||||| || ||| Sbjct 88 TCTGGAGCTGTTCCTTGAGGGGCTCGACGTGGTTGGCGTAGACGTGGGCGTCGCCGAGGA 147 Query 27185 TGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAG 27244 ||| | |||||| || || || ||| ||| || || | |||| |||||||| | Sbjct 148 CGTGAAAAAACTCCCCTGGGCGGAGGCCGCAGACCTGGGCGAGCATGCGGGTGAGGAGGG 207 Query 27245 AGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCT 27304 |||| |||||||| ||||| || || || || | ||| |||| | |||||| | Sbjct 208 CGTAGGAAGCGATGTTGAAGGGCACGCCCAGGCCGAGGTCTGCCGAGCGCTGGTACATGG 267 Query 27305 GACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAG 27364 || ||||||||||| | ||| | ||||| | ||||||| || || || | Sbjct 268 AGCAGGAGAGCTCTCCCCGGGCCACGAAGAACTGGGCGAGCACGTGGCAGGGCGGCAGGG 327 Query 27365 CCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGT 27424 |||| | | | | |||||||||||||||| | | | ||||| ||| |||| Sbjct 328 CCATTTGCGGGATGGCGGTGGGGTTCCAGGCGCAGAGCAGCAGGCGCCGGTCGCAGGGGT 387 Query 27425 TGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTA 27484 || || ||||| ||| || || | ||| ||||| ||| ||| | ||||| Sbjct 388 TGGTCTTGATGCGGTGGACTAGGTCGGCAACCTGGTCCACGCCCTGCCCGGCATAGTCGG 447 Query 27485 CCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCA 27544 | |||||| | ||| | || || || || | ||| || || |||||||| || |||| Sbjct 448 CGTGCATGTCGGCGTAGGCGGCGCCAAAGTGGCGCCACTGAAAGCCGTACACGGGCCCCA 507 Query 27545 GGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 27604 ||| ||||| || | ||||| | |||| | ||||| ||| | | ||| |||||| Sbjct 508 AGTCGCCCTCCTCGCGGTGCTGCAGGCCCAGCGAGTCCAGAAAAGCGCGGGATCCGTTGC 567 Query 27605 CGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCT-TTGGAGTTTGTGGACCCTCTGACG 27663 ||||||| || || ||||| | ||| ||| |||| || ||||| || | | Sbjct 568 CGTCCCAAATGCCCACGCCCTTGGCCTTGAG-TCTGTTGGCGTCGGTGGAGCCCGCCAGG 626 Query 27664 AACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGA 27723 ||||| |||||||| ||||| ||| | ||| || || | |||||| || || || ||| Sbjct 627 AACCAGAGCAGCTCTTCCACCACGCCGCGCCAGAACACGCGCTTGGTGGTAAGCAGCGGA 686 Query 27724 AA-CTGTCCC-----TTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCCC 27777 || |||| || |||| || | ||| || | ||||||||| | || |||| Sbjct 687 AAGCTGTGCCGCAGGTTGAAGC---GCATGG--TGCG-ACCAAACACCGCCAGCGTTCCC 740 Query 27778 GTGCCCGTCCTGTCTCCCC 27796 ||||| |||| ||||||| Sbjct 741 GTGCCGGTCCGATCTCCCC 759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369481683911246