Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2724 127 5e-24 seq55 86.0 1e-11 >seq2724 Length=1646 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| |||||||| |||||||| || ||||||||||| |||| | ||| | ||||| Sbjct 1323 GAGGACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATC 1382 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || ||||| || || | ||||||||| | | || || ||||| || Sbjct 1383 CTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTC 1442 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || ||||| |||| | | |||| ||| ||| || || || || || || Sbjct 1443 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGT 1502 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || ||||| ||||||| |||||| Sbjct 1503 CTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 1535 >seq55 Length=8980 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || || || || ||||| || ||||||||||| ||||| | || | || || Sbjct 4026 GAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTC 4085 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||||||||| || | ||||||||| | | ||| || ||||| || Sbjct 4086 CTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 4145 Query 152012 TTGAATTTTTTGTTTGACAGTCTCT 152036 ||||| || |||||| ||||| Sbjct 4146 CTGAATCTTGGCCTTGACATTCTCT 4170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153737037657886