Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2724 176 9e-39 seq3257 134 3e-26 seq55 113 9e-20 seq81 105 1e-17 >seq2724 Length=1646 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || ||||| || || |||||||| | || || || |||||||||||||| | Sbjct 1309 CCGCCGCGCAGACGGAGGACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 1368 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || || || |||| || || ||||| ||| Sbjct 1369 AGAGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGA 1428 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| |||||||||| || || Sbjct 1429 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAAGACTCCACC 1488 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| ||||||| ||||| ||||| |||||||| Sbjct 1489 TCGAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 1535 >seq3257 Length=1341 Score = 134 bits (148), Expect = 3e-26 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | || |||||||||||||| || || || || || || Sbjct 22 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAA 81 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| || || ||||| ||||| ||||||||||| |||||||| || || ||| | Sbjct 82 ATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTT 141 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACC 283072 || ||||||||||||| || || ||||| ||||| ||||| || Sbjct 142 TCAATAGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTGCC 185 >seq55 Length=8980 Score = 113 bits (124), Expect = 9e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | ||| || || |||||||||||||| || Sbjct 4012 CCGCCGCGCAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 4071 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| || || || ||||| ||||||| || || |||||| || Sbjct 4072 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 4131 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024 || ||||||||||| || ||||| || || || Sbjct 4132 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGAC 4163 >seq81 Length=8194 Score = 105 bits (116), Expect = 1e-17 Identities = 186/271 (69%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 273779 CGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTG 273838 |||||| ||||| | || || || ||||||||| || ||||| | || |||||||| Sbjct 310 CGTGAAGATGTAGCGCGCGCTGGCGGCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTG 369 Query 273839 ACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCAC 273898 ||||| |||| || |||| | ||||||| || || | ||||| || | ||| Sbjct 370 ACCCTGCGGCACCAGGTAGTTGACGTTGTTGGAGCCCACAAAGTCCTGGGCTAGGCCCAC 429 Query 273899 GATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACC 273958 ||| || ||| ||||| ||||||||| || || ||||| | || || | || || Sbjct 430 GATGGTGCCCATGAGGGAGGTCTCGCCGTGATGGTACGCGCTCTTCTCCGCCACGTAGCC 489 Query 273959 ACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACAC 274018 | ||| || ||||| | || || ||| ||| |||||||| || | ||| | Sbjct 490 CGCCAGCTGCGCGACCTTGATGTCCTTCTTCAGGTTGCGCTTGAAGCAGGCAAACAGGAT 549 Query 274019 CTTCCGCTGCGAGGGCTTGAACCCATCAACG 274049 ||| |||||| ||| |||| ||| || ||| Sbjct 550 CTTGCGCTGCCCGGGTTTGAGCCCGTCCACG 580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046663211313564