Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq2724 176 9e-39
seq3257 134 3e-26
seq55 113 9e-20
seq81 105 1e-17
>seq2724
Length=1646
Score = 176 bits (194), Expect = 9e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| || ||||| || || |||||||| | || || || |||||||||||||| |
Sbjct 1309 CCGCCGCGCAGACGGAGGACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 1368
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||||||||| || || || || || || |||| || || ||||| |||
Sbjct 1369 AGAGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGA 1428
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||||||||| |||||||| || || ||| | ||||| |||||||||| || ||
Sbjct 1429 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAAGACTCCACC 1488
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| ||||||| ||||| ||||| ||||||||
Sbjct 1489 TCGAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 1535
>seq3257
Length=1341
Score = 134 bits (148), Expect = 3e-26
Identities = 128/164 (78%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| || |||||||||||||| | || |||||||||||||| || || || || || ||
Sbjct 22 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAA 81
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
|||| || || ||||| ||||| ||||||||||| |||||||| || || ||| |
Sbjct 82 ATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTT 141
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACC 283072
|| ||||||||||||| || || ||||| ||||| ||||| ||
Sbjct 142 TCAATAGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTGCC 185
>seq55
Length=8980
Score = 113 bits (124), Expect = 9e-20
Identities = 116/152 (76%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| || |||||||| || ||||| || | ||| || || |||||||||||||| ||
Sbjct 4012 CCGCCGCGCAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 4071
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||| ||||| || || || ||||| ||||||| || || |||||| ||
Sbjct 4072 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 4131
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024
|| ||||||||||| || ||||| || || ||
Sbjct 4132 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGAC 4163
>seq81
Length=8194
Score = 105 bits (116), Expect = 1e-17
Identities = 186/271 (69%), Gaps = 0/271 (0%)
Strand=Plus/Plus
Query 273779 CGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTG 273838
|||||| ||||| | || || || ||||||||| || ||||| | || ||||||||
Sbjct 310 CGTGAAGATGTAGCGCGCGCTGGCGGCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTG 369
Query 273839 ACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCAC 273898
||||| |||| || |||| | ||||||| || || | ||||| || | |||
Sbjct 370 ACCCTGCGGCACCAGGTAGTTGACGTTGTTGGAGCCCACAAAGTCCTGGGCTAGGCCCAC 429
Query 273899 GATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACC 273958
||| || ||| ||||| ||||||||| || || ||||| | || || | || ||
Sbjct 430 GATGGTGCCCATGAGGGAGGTCTCGCCGTGATGGTACGCGCTCTTCTCCGCCACGTAGCC 489
Query 273959 ACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACAC 274018
| ||| || ||||| | || || ||| ||| |||||||| || | ||| |
Sbjct 490 CGCCAGCTGCGCGACCTTGATGTCCTTCTTCAGGTTGCGCTTGAAGCAGGCAAACAGGAT 549
Query 274019 CTTCCGCTGCGAGGGCTTGAACCCATCAACG 274049
||| |||||| ||| |||| ||| || |||
Sbjct 550 CTTGCGCTGCCCGGGTTTGAGCCCGTCCACG 580
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046663211313564
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |