Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2724 150 4e-31 seq3257 125 2e-23 seq55 100 7e-16 >seq2724 Length=1646 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || ||||||||||||||||| || ||| Sbjct 1532 CAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGAC 1473 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| |||||||| || || || ||||| |||||||| Sbjct 1472 ACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAGCAG 1413 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || ||||| || ||||| | ||||| |||| || ||| || Sbjct 1412 CGCCTGATTTTCGCGGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAACATC 1353 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 1352 CAGAAGGAGTCTACCCTTCATCTGGT 1327 >seq3257 Length=1341 Score = 125 bits (138), Expect = 2e-23 Identities = 138/184 (75%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 177946 CAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAA 178005 |||| || || ||||||||||||||||| || ||||| || || |||||||| | Sbjct 187 CAGGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACTATTGAAAACGTCAAGGCCA 128 Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 |||| |||||||| || || || ||||| |||||||| || || || ||||| || || | Sbjct 127 AGATCCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGCCTGATTTTCGCGGGCAAGC 68 Query 178066 AGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATC 178125 |||| || ||||| | ||||| |||| || ||| |||| || || || || || || | Sbjct 67 AGCTGGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCTACCCTTCACC 8 Query 178126 TTGT 178129 | || Sbjct 7 TGGT 4 >seq55 Length=8980 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 ||||| ||||| |||||||||||||| || || ||||| || |||||||| || || Sbjct 4169 GAGAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTG 4110 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAA 178109 ||||||||||| || ||||| || || || | || || ||||| || ||| |||| || Sbjct 4109 ATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCCGACTACAACATCCAGAAG 4050 Query 178110 GAATCAACACTGCATCTTGT 178129 || || || || || || || Sbjct 4049 GAGTCCACCCTCCACCTGGT 4030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203643814381204