Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq2724 150 4e-31
seq3257 125 2e-23
seq55 100 7e-16
>seq2724
Length=1646
Score = 150 bits (166), Expect = 4e-31
Identities = 157/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || || || || || || ||||||||||||||||| || |||
Sbjct 1532 CAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGAC 1473
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||||||||||||||| ||||| |||||||| || || || ||||| ||||||||
Sbjct 1472 ACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAGCAG 1413
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || ||||| || || ||||| || ||||| | ||||| |||| || ||| ||
Sbjct 1412 CGCCTGATTTTCGCGGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAACATC 1353
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || ||||| ||
Sbjct 1352 CAGAAGGAGTCTACCCTTCATCTGGT 1327
>seq3257
Length=1341
Score = 125 bits (138), Expect = 2e-23
Identities = 138/184 (75%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 177946 CAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAA 178005
|||| || || ||||||||||||||||| || ||||| || || |||||||| |
Sbjct 187 CAGGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACTATTGAAAACGTCAAGGCCA 128
Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065
|||| |||||||| || || || ||||| |||||||| || || || ||||| || || |
Sbjct 127 AGATCCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGCCTGATTTTCGCGGGCAAGC 68
Query 178066 AGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATC 178125
|||| || ||||| | ||||| |||| || ||| |||| || || || || || || |
Sbjct 67 AGCTGGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCTACCCTTCACC 8
Query 178126 TTGT 178129
| ||
Sbjct 7 TGGT 4
>seq55
Length=8980
Score = 100 bits (110), Expect = 7e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049
||||| ||||| |||||||||||||| || || ||||| || |||||||| || ||
Sbjct 4169 GAGAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTG 4110
Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAA 178109
||||||||||| || ||||| || || || | || || ||||| || ||| |||| ||
Sbjct 4109 ATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCCGACTACAACATCCAGAAG 4050
Query 178110 GAATCAACACTGCATCTTGT 178129
|| || || || || || ||
Sbjct 4049 GAGTCCACCCTCCACCTGGT 4030
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203643814381204
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |