Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micractinium_20conductrix_20[genbank_20GCA_5F002245815.1_202017-08- 10] 301 sequences; 61,020,757 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq271 122 2e-22 seq225 86.0 1e-11 >seq271 Length=1385635 Score = 122 bits (134), Expect = 2e-22 Identities = 228/331 (69%), Gaps = 7/331 (2%) Strand=Plus/Minus Query 320401 TTCGCCATGTTCCTGATGATAACACATGTCTTACGCCGAACGGGGGTGGTGCGATCGGCA 320460 || |||||||| | |||||| || || | ||| || || | |||||||||||| || | Sbjct 1109260 TTGGCCATGTTGCGGATGATGACGCAGGCCTTGCGGCGGATGGGGGTGGTGCGGTCAGTG 1109201 Query 320461 AGCCCGCGGACGAGTAGCGGGGTCAGGATAGACAGGGTCTTCGCGTCAACCGACTGGACG 320520 || ||||| || || || || |||||| |||||||| |||||| || ||||| ||| Sbjct 1109200 AGACCGCGCACCAGCAGGGGCACCAGGATGGACAGGGTGCGCGCGTCCACAGACTGCACG 1109141 Query 320521 AACGTGGTCGCAGATAGGTTGTGGACACACTCGGGGACGTCCTGAGGAGAACCAATACTC 320580 ||||||||||| || || ||||| || || ||||| || || || | || || | Sbjct 1109140 AACGTGGTCGCCGACAGCTTGTGCACGCAGTCGGGCACCTCGCCGGGTGCGCCGATGCAG 1109081 Query 320581 TTCACGAGATGGGGAATGAAGGGTTCGATGTCTTTGTTATCAAT----TTGACAACACGC 320636 | || ||||| | ||||| || ||||| ||| |||| || || ||| Sbjct 1109080 CGGATCAGGTGGGGCACAAAGGGCTCAATGTCGCGGTTGCCAATGGCGGTG-CAGCACTT 1109022 Query 320637 GATAAGAGCCTTCGTGGC-ACTGTCCTTTACCACTTGCTTCAGGTCAATCATACAATCTG 320695 | | || || | ||||| | || | || |||| ||||| | ||| || | | Sbjct 1109021 GGTGAGCGCTTCTGTGGCGGCGGTGC-GCACGGTGGGCTTGAGGTCCACCATGCAGTTGG 1108963 Query 320696 TCACCACCGGTACAATTTCGGGAAGGTAGAC 320726 |||| ||||| ||||| ||||| |||||||| Sbjct 1108962 TCACGACCGGCACAATCTCGGGCAGGTAGAC 1108932 >seq225 Length=1776192 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 1653611 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1653670 Query 165770 CCCAC 165774 ||||| Sbjct 1653671 CCCAC 1653675 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 1683506 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1683447 Query 165770 CCCAC 165774 ||||| Sbjct 1683446 CCCAC 1683442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057819920435630