Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micractinium_20conductrix_20[genbank_20GCA_5F002245815.1_202017-08- 10] 301 sequences; 61,020,757 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq286 136 4e-27 seq242 136 4e-27 seq280 131 2e-25 seq53 114 1e-20 >seq286 Length=1206827 Score = 136 bits (150), Expect = 4e-27 Identities = 111/135 (82%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||||||| | |||||||| || || |||| ||||||||| |||||||| Sbjct 1113110 GACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAG 1113169 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| ||||| || ||||||||||||||||||||| |||| ||||| || ||| || Sbjct 1113170 GACGGCCGCACGCTGGCAGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 1113229 Query 40903 CGCTTGAGGGGCGGC 40917 ||| || | |||||| Sbjct 1113230 CGCCTGCGCGGCGGC 1113244 Score = 136 bits (150), Expect = 4e-27 Identities = 111/135 (82%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||||||| | |||||||| || || |||| ||||||||| |||||||| Sbjct 1113615 GACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAG 1113674 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| ||||| || ||||||||||||||||||||| |||| ||||| || ||| || Sbjct 1113675 GACGGCCGCACGCTGGCGGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 1113734 Query 40903 CGCTTGAGGGGCGGC 40917 ||| || | |||||| Sbjct 1113735 CGCCTGCGCGGCGGC 1113749 >seq242 Length=371688 Score = 136 bits (150), Expect = 4e-27 Identities = 111/135 (82%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||||||| | |||||||| || || |||| ||||||||| |||||||| Sbjct 197928 GACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAG 197869 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| ||||| || ||||||||||||||||||||| |||| ||||| || ||| || Sbjct 197868 GACGGCCGCACGCTGGCGGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 197809 Query 40903 CGCTTGAGGGGCGGC 40917 ||| || | |||||| Sbjct 197808 CGCCTGCGCGGCGGC 197794 >seq280 Length=4282644 Score = 131 bits (144), Expect = 2e-25 Identities = 110/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||||||||| | |||||||| || || |||| ||||||||| |||||||| Sbjct 2001602 GACAAGGAGGGCATCCCGCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAG 2001543 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| ||||| || ||||||||||||||||||||| |||| ||||| || ||| || Sbjct 2001542 GACGGCCGCACGCTGGCGGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 2001483 Query 40903 CGCTTGAGGGGCGGC 40917 ||| || | |||||| Sbjct 2001482 CGCCTGCGCGGCGGC 2001468 Score = 123 bits (136), Expect = 3e-23 Identities = 101/123 (82%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||||||||| | |||||||| || || |||| ||||||||| |||||||| Sbjct 2002157 GACAAGGAGGGCATCCCGCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAG 2002098 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| ||||| || ||||||||||||||||||||| |||| ||||| || ||| || Sbjct 2002097 GACGGCCGCACGCTGGCGGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 2002038 Query 40903 CGC 40905 ||| Sbjct 2002037 CGC 2002035 Score = 123 bits (136), Expect = 3e-23 Identities = 101/123 (82%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||||||||| | |||||||| || || |||| ||||||||| |||||||| Sbjct 2002712 GACAAGGAGGGCATCCCGCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAG 2002653 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| ||||| || ||||||||||||||||||||| |||| ||||| || ||| || Sbjct 2002652 GACGGCCGCACGCTGGCGGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 2002593 Query 40903 CGC 40905 ||| Sbjct 2002592 CGC 2002590 Score = 123 bits (136), Expect = 3e-23 Identities = 101/123 (82%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||||||||| | |||||||| || || |||| ||||||||| |||||||| Sbjct 2003267 GACAAGGAGGGCATCCCGCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAG 2003208 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| ||||| || ||||||||||||||||||||| |||| ||||| || ||| || Sbjct 2003207 GACGGCCGCACGCTGGCGGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 2003148 Query 40903 CGC 40905 ||| Sbjct 2003147 CGC 2003145 Score = 111 bits (122), Expect = 2e-19 Identities = 93/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 |||||||| | |||||||| || || |||| ||||||||| |||||||| |||| ||| Sbjct 2003818 GGCATCCCGCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCCGC 2003759 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 || || ||||||||||||||||||||| |||| ||||| || ||| ||||| Sbjct 2003758 ACGCTGGCGGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGC 2003705 >seq53 Length=124359 Score = 114 bits (126), Expect = 1e-20 Identities = 106/133 (80%), Gaps = 1/133 (1%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 |||||||| | |||||||| || || |||| ||||||||| |||||||| |||| ||| Sbjct 80796 GGCATCCCGCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCCGC 80737 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || ||||||||||||||||||||| |||| ||||| || ||| ||||| || | Sbjct 80736 ACGCTGGCGGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGC 80677 Query 40912 GGCGGCG-GCTTG 40923 || || | ||||| Sbjct 80676 GGAGGTGCGCTTG 80664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217261487760