Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micractinium_20conductrix_20[genbank_20GCA_5F002245815.1_202017-08- 10] 301 sequences; 61,020,757 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq286 116 2e-21 seq280 111 1e-19 seq242 111 1e-19 seq53 98.7 6e-16 >seq286 Length=1206827 Score = 116 bits (128), Expect = 2e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | |||||||||||| | || || ||||| ||||||||||| | | Sbjct 1113243 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCC 1113184 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| |||| ||||||||| ||||| || || |||||||||||| ||| Sbjct 1113183 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 1113124 Query 34283 ACGCTCTCCTTGTC 34296 | || ||||||||| Sbjct 1113123 ATGCCCTCCTTGTC 1113110 Score = 116 bits (128), Expect = 2e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | |||||||||||| | || || ||||| ||||||||||| | | Sbjct 1113748 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 1113689 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| |||| ||||||||| ||||| || || |||||||||||| ||| Sbjct 1113688 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 1113629 Query 34283 ACGCTCTCCTTGTC 34296 | || ||||||||| Sbjct 1113628 ATGCCCTCCTTGTC 1113615 >seq280 Length=4282644 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | |||||||||||| | || || ||||| ||||||||||| | | Sbjct 2001469 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 2001528 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| |||| ||||||||| ||||| || || |||||||||||| || Sbjct 2001529 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 2001588 Query 34283 ACGCTCTCCTTGTC 34296 | || ||||||||| Sbjct 2001589 ATGCCCTCCTTGTC 2001602 Score = 102 bits (112), Expect = 5e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | |||||||||||| | || || ||||| ||||||||||| | | Sbjct 2002024 CCACCGCGAAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 2002083 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| |||| ||||||||| ||||| || || |||||||||||| || Sbjct 2002084 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 2002143 Query 34283 ACGCTCTCCTTGTC 34296 | || ||||||||| Sbjct 2002144 ATGCCCTCCTTGTC 2002157 Score = 102 bits (112), Expect = 5e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | |||||||||||| | || || ||||| ||||||||||| | | Sbjct 2002579 CCACCGCGAAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 2002638 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| |||| ||||||||| ||||| || || |||||||||||| || Sbjct 2002639 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 2002698 Query 34283 ACGCTCTCCTTGTC 34296 | || ||||||||| Sbjct 2002699 ATGCCCTCCTTGTC 2002712 Score = 102 bits (112), Expect = 5e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | |||||||||||| | || || ||||| ||||||||||| | | Sbjct 2003134 CCACCGCGAAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 2003193 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| |||| ||||||||| ||||| || || |||||||||||| || Sbjct 2003194 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 2003253 Query 34283 ACGCTCTCCTTGTC 34296 | || ||||||||| Sbjct 2003254 ATGCCCTCCTTGTC 2003267 Score = 93.3 bits (102), Expect = 3e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | |||||||||||| | || || ||||| ||||||||||| | | Sbjct 2003694 CCACCGCGAAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 2003753 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCG 34276 ||| ||| |||| |||| ||||||||| ||||| || || |||||||||||| Sbjct 2003754 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCG 2003807 >seq242 Length=371688 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | |||||||||||| | || || ||||| ||||||||||| | | Sbjct 197795 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 197854 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| |||| ||||||||| ||||| || || ||||||||||| ||| Sbjct 197855 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 197914 Query 34283 ACGCTCTCCTTGTC 34296 | || ||||||||| Sbjct 197915 ATGCCCTCCTTGTC 197928 >seq53 Length=124359 Score = 98.7 bits (108), Expect = 6e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | |||||||||||| | || || ||||| ||||||||||| | | Sbjct 80672 CCTCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 80731 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCG 34276 ||| ||| |||| |||| ||||||||| ||||| || || |||||||||||| Sbjct 80732 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCG 80785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323070814830560