Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micractinium_20conductrix_20[genbank_20GCA_5F002245815.1_202017-08- 10] 301 sequences; 61,020,757 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq52 710 0.0 >seq52 Length=149364 Score = 710 bits (786), Expect = 0.0 Identities = 732/955 (77%), Gaps = 2/955 (0%) Strand=Plus/Minus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 || || |||||||| || ||||| || ||||| | || | ||||||||||| | | Sbjct 86189 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGTTA 86130 Query 135434 ATGATTCCTACTCTTCTCGCAGCTGCTATCTGC-TTTATTGTTGCTTTCATCGCTGCACC 135492 ||||| |||||| | | ||||| || || | ||||| | || || ||||| || || Sbjct 86129 ATGATCCCTACTTTATTAACAGCTACT-TCAGTATTTATCATCGCATTTATCGCAGCTCC 86071 Query 135493 TCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAA 135552 || |||||||| || || ||||| || |||||| | ||||| || | || ||||| || Sbjct 86070 GCCTGTCGATATCGATGGTATCCGTGAGCCTGTTTCAGGTTCATTACTATATGGAAACAA 86011 Query 135553 CATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCCATCGGCCTTCACTTCTATCCCAT 135612 |||||| |||||||| |||| || || ||||| ||||| | |||||||| || || Sbjct 86010 TATCATCACTGGTGCTATTATTCCAACTTCTAACGCTATCGGTTTACACTTCTACCCAAT 85951 Query 135613 CTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTGGT 135672 |||||||| |||||||||||||||||| |||| |||||||||||||| ||||| | || Sbjct 85950 TTGGGAAGCAGCTTCTCTTGATGAGTGGTTATACAATGGTGGTCCTTACCAACTTATCGT 85891 Query 135673 CTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTACCG 135732 | ||| ||| | | || || | || ||||||||||| ||||||||| | |||| || Sbjct 85890 TTGCCATTTCTTCTTAGGCGTTTGTTCATACATGGGTCGTGAGTGGGAATTATCTTTTCG 85831 Query 135733 ACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGC 135792 | |||||||| |||||||| || ||||||||||| || ||||| || ||||| || Sbjct 85830 TTTAGGTATGCGTCCTTGGATCGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGC 85771 Query 135793 TGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGCAT 135852 ||| ||| | | || || | || |||||||||||| |||||||||||| | || || Sbjct 85770 TGTATTCATCATTTATCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 85711 Query 135853 TTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCATCC 135912 ||||| ||||| |||| |||| | || ||||| || || |||||||| || ||||| || Sbjct 85710 CTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 85651 Query 135913 TTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCATGG 135972 ||||| ||| | || |||||||| || || |||||||| | |||||||||||||| || Sbjct 85650 ATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGG 85591 Query 135973 ATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTATGG 136032 || ||||| || ||| | | | ||||| || ||||| ||||| ||| | || Sbjct 85590 TTCACTTGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCAGCTAACGAAGG 85531 Query 136033 TTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCGG 136092 |||||| ||||||||||||||||| ||||||||||| ||||| |||||||| |||||||| Sbjct 85530 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCATGGCTACTTCGG 85471 Query 136093 TCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTGC 136152 |||| | || ||||||||||| || ||||||||||||||||| |||| || ||| | || Sbjct 85470 TCGTTTAATTTTCCAATATGCTTCTTTCAACAACTCTCGTTCATTACATTTCTTCTTAGC 85411 Query 136153 TGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTCAA 136212 ||||||||| ||||| ||||| ||||| |||| | || | || || ||||| ||||| Sbjct 85410 TGCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTCAA 85351 Query 136213 CCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAACAC 136272 | | ||||| |||||||||||||| || ||||| ||| ||||||||||| ||||||| Sbjct 85350 CTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACAC 85291 Query 136273 CTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 |||||||| | | || ||||| || |||||||| || ||||| |||||| Sbjct 85290 TTGGGCAGACATTATCAACCGTGCCAACCTTGGTATGGAAGTAATGCATGAGCGT 85236 Score = 443 bits (490), Expect = 3e-119 Identities = 523/708 (74%), Gaps = 0/708 (0%) Strand=Plus/Minus Query 137857 GAGGATGGTTCGATGTCTTGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTT 137916 |||| ||||| ||||| | ||||||||| || || || || || || ||| | || | Sbjct 18100 GAGGTTGGTTTGATGTAGTAGATGACTGGCTTCGTCGTGACCGTTTCGTCTTTCTAGGAT 18041 Query 137917 GGTCTGGACTACTACTTTTTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCA 137976 |||| || || || | || || || || || |||| |||||||| ||| |||| || | Sbjct 18040 GGTCAGGGTTATTATTATTGCCTACAGCATACCTGGCACTTGGTGGTTGGTTTACAGGAA 17981 Query 137977 CAACGTTTGTTACAAGCTGGTACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTA 138036 | || ||||| || ||||| || || || || || ||| ||| | ||||| || Sbjct 17980 CTACATTTGTAACGTCTTGGTATACTCATGGTTTAGCATCTTCATATTTAGAAGGATGTA 17921 Query 138037 ATTTCCTCACAGCAGCTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTAC 138096 ||||| | |||||||||||||| ||||| || || ||||||||||||| | | | | Sbjct 17920 ATTTCTTAACAGCAGCTGTTTCAACTCCAGCGAATAGTATGGGTCATTCTTTATTATTCC 17861 Query 138097 TTTGGGGTCCTGAGTCTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGA 138156 ||||||| || || ||||||| ||| || || |||| |||||||| || || |||| Sbjct 17860 TTTGGGGCCCAGAAGCTCAAGGCGATTTCACACGTTGGTGTCAACTTGGTGGTCTATGGA 17801 Query 138157 CTTTTGTGGCGCTCCACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGA 138216 | ||||| || || ||||| || ||| ||||||||| || |||||||| |||||||| | Sbjct 17800 CGTTTGTTGCTCTTCACGGTGCATTTGCTCTGATTGGTTTTATGCTTCGTCAGTTTGAAA 17741 Query 138217 TCTCTCGTCTGGTAGGCATCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTG 138276 | | ||| ||| || || || ||||||||||| ||||| || | || || ||| Sbjct 17740 TTGCACGTTCAGTAAAGATTCGCCCTTACAACGCAATTGCATTTTCAGCACCAATTTCTG 17681 Query 138277 TGTTCGTCAGCGTGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCT 138336 | ||||| || ||| | || || ||||| || ||||| ||||||||||||| || Sbjct 17680 TATTCGTTTCTGTATTCTTAATTTACCCTTTAGGACAATCTGGTTGGTTCTTTGCACCAA 17621 Query 138337 CCTTTGGTGTGGCAGCAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGA 138396 ||||||||| || ||||| ||||||||| | || ||| | || |||||||||||||||| Sbjct 17620 GCTTTGGTGTTGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGA 17561 Query 138397 CCCTCAACCCCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTG 138456 | | ||||| || ||||||||||| ||||| ||| | ||||| | |||||| || |||| Sbjct 17560 CTTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGAGCTGCTCTACTTTGTG 17501 Query 138457 CTATTCATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTT 138516 | |||||||| || || ||||||||||| | | ||| ||||| || |||| || | Sbjct 17500 CAATTCATGGCGCAACTGTAGAAAATACGCTTTTTGAGGATGGTGATGGTGCAAACACAT 17441 Query 138517 TTAAAGCATTTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTA 138564 | || ||| | || ||||||| |||||||| || |||||||||| Sbjct 17440 TCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACATACTCAATGGTTA 17393 Score = 443 bits (490), Expect = 3e-119 Identities = 523/708 (74%), Gaps = 0/708 (0%) Strand=Plus/Minus Query 137857 GAGGATGGTTCGATGTCTTGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTT 137916 |||| ||||| ||||| | ||||||||| || || || || || || ||| | || | Sbjct 147545 GAGGTTGGTTTGATGTAGTAGATGACTGGCTTCGTCGTGACCGTTTCGTCTTTCTAGGAT 147486 Query 137917 GGTCTGGACTACTACTTTTTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCA 137976 |||| || || || | || || || || || |||| |||||||| ||| |||| || | Sbjct 147485 GGTCAGGGTTATTATTATTGCCTACAGCATACCTGGCACTTGGTGGTTGGTTTACAGGAA 147426 Query 137977 CAACGTTTGTTACAAGCTGGTACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTA 138036 | || ||||| || ||||| || || || || || ||| ||| | ||||| || Sbjct 147425 CTACATTTGTAACGTCTTGGTATACTCATGGTTTAGCATCTTCATATTTAGAAGGATGTA 147366 Query 138037 ATTTCCTCACAGCAGCTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTAC 138096 ||||| | |||||||||||||| ||||| || || ||||||||||||| | | | | Sbjct 147365 ATTTCTTAACAGCAGCTGTTTCAACTCCAGCGAATAGTATGGGTCATTCTTTATTATTCC 147306 Query 138097 TTTGGGGTCCTGAGTCTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGA 138156 ||||||| || || ||||||| ||| || || |||| |||||||| || || |||| Sbjct 147305 TTTGGGGCCCAGAAGCTCAAGGCGATTTCACACGTTGGTGTCAACTTGGTGGTCTATGGA 147246 Query 138157 CTTTTGTGGCGCTCCACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGA 138216 | ||||| || || ||||| || ||| ||||||||| || |||||||| |||||||| | Sbjct 147245 CGTTTGTTGCTCTTCACGGTGCATTTGCTCTGATTGGTTTTATGCTTCGTCAGTTTGAAA 147186 Query 138217 TCTCTCGTCTGGTAGGCATCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTG 138276 | | ||| ||| || || || ||||||||||| ||||| || | || || ||| Sbjct 147185 TTGCACGTTCAGTAAAGATTCGCCCTTACAACGCAATTGCATTTTCAGCACCAATTTCTG 147126 Query 138277 TGTTCGTCAGCGTGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCT 138336 | ||||| || ||| | || || ||||| || ||||| ||||||||||||| || Sbjct 147125 TATTCGTTTCTGTATTCTTAATTTACCCTTTAGGACAATCTGGTTGGTTCTTTGCACCAA 147066 Query 138337 CCTTTGGTGTGGCAGCAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGA 138396 ||||||||| || ||||| ||||||||| | || ||| | || |||||||||||||||| Sbjct 147065 GCTTTGGTGTTGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGA 147006 Query 138397 CCCTCAACCCCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTG 138456 | | ||||| || ||||||||||| ||||| ||| | ||||| | |||||| || |||| Sbjct 147005 CTTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGAGCTGCTCTACTTTGTG 146946 Query 138457 CTATTCATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTT 138516 | |||||||| || || ||||||||||| | | ||| ||||| || |||| || | Sbjct 146945 CAATTCATGGCGCAACTGTAGAAAATACGCTTTTTGAGGATGGTGATGGTGCAAACACAT 146886 Query 138517 TTAAAGCATTTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTA 138564 | || ||| | || ||||||| |||||||| || |||||||||| Sbjct 146885 TCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACATACTCAATGGTTA 146838 Score = 246 bits (272), Expect = 4e-60 Identities = 243/314 (77%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 138564 ACTGCTAACCGTTACTGGTCGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTT 138623 ||||| || |||| |||||| ||||| ||||| | |||||| ||||| |||||| | Sbjct 16348 ACTGCAAATCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAATAAACGTTGGTTA 16289 Query 138624 CACTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATT 138683 |||||||||||| | |||||||| || | ||||| |||| ||| |||||| | | Sbjct 16288 CACTTCTTTATGTTATTTGTTCCGGTAACTGGTCTTTGGATGAGTGCAATTGGTGTAGTA 16229 Query 138684 GGTCTTGCTCTTAACCTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAA 138743 ||| | ||| | ||| |||| |||||||||||||| || ||||||||||| || || ||| Sbjct 16228 GGTTTAGCTTTAAACTTACGTGCGTATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAA 16169 Query 138744 GATCCTGAATTCGAGACCTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCC 138803 ||||||||||| || || ||||| || || || |||||| | || |||||| | ||||| Sbjct 16168 GATCCTGAATTTGAAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 16109 Query 138804 TGGATGGCTCCTGTGGATCAACCTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCA 138863 ||||||||| || ||||| ||||| ||||| |||| || ||||| || || || ||| Sbjct 16108 TGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCA 16049 Query 138864 AGAGGCAACGCTCT 138877 | || |||||||| Sbjct 16048 CGTGGAAACGCTCT 16035 Score = 246 bits (272), Expect = 4e-60 Identities = 243/314 (77%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 138564 ACTGCTAACCGTTACTGGTCGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTT 138623 ||||| || |||| |||||| ||||| ||||| | |||||| ||||| |||||| | Sbjct 145793 ACTGCAAATCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAATAAACGTTGGTTA 145734 Query 138624 CACTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATT 138683 |||||||||||| | |||||||| || | ||||| |||| ||| |||||| | | Sbjct 145733 CACTTCTTTATGTTATTTGTTCCGGTAACTGGTCTTTGGATGAGTGCAATTGGTGTAGTA 145674 Query 138684 GGTCTTGCTCTTAACCTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAA 138743 ||| | ||| | ||| |||| |||||||||||||| || ||||||||||| || || ||| Sbjct 145673 GGTTTAGCTTTAAACTTACGTGCGTATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAA 145614 Query 138744 GATCCTGAATTCGAGACCTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCC 138803 ||||||||||| || || ||||| || || || |||||| | || |||||| | ||||| Sbjct 145613 GATCCTGAATTTGAAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 145554 Query 138804 TGGATGGCTCCTGTGGATCAACCTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCA 138863 ||||||||| || ||||| ||||| ||||| |||| || ||||| || || || ||| Sbjct 145553 TGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCA 145494 Query 138864 AGAGGCAACGCTCT 138877 | || |||||||| Sbjct 145493 CGTGGAAACGCTCT 145480 Score = 87.8 bits (96), Expect = 2e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 119469 GTCGCCAAGTGGTAAGGCAGCGGGTTTTGGTCCCGCCATTCGTGGGTTCGAATCCT 119524 |||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 95120 GTCGCCAAGTGGTAAGGCTGCGGGTTTTGGTCCCGCCATTCGGAGGTTCGAATCCT 95175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627965637270400