Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micractinium_20conductrix_20[genbank_20GCA_5F002245815.1_202017-08- 10] 301 sequences; 61,020,757 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq52 713 0.0 >seq52 Length=149364 Score = 713 bits (790), Expect = 0.0 Identities = 754/988 (76%), Gaps = 10/988 (1%) Strand=Plus/Minus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 ||||||||||||||||| |||||| || || | ||| | |||||||||||||| ||| Sbjct 86189 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGTTA 86130 Query 170726 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 170785 |||||||| | | |||| ||| || | || || | ||||| ||||| ||||| Sbjct 86129 ATGATCCCTACTTTATTAACAGCTACTTCAGTATTTATCATCGCATTTATCGCAGCTCCG 86070 Query 170786 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 170845 || ||||||||||| || ||| | || || ||| | ||||| || ||||||| ||||| Sbjct 86069 CCTGTCGATATCGATGGTATCCGTGAGCCTGTTTCAGGTTCATTACTATATGGAAACAAT 86010 Query 170846 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 170905 |||||| |||||||| | ||||| |||| ||||| || || ||||||||||| || || Sbjct 86009 ATCATCACTGGTGCTATTATTCCAACTTCTAACGCTATCGGTTTACACTTCTACCCAATT 85950 Query 170906 TGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATT 170965 ||||||||||| || | || |||||||| ||||| || ||||||||||| | | || Sbjct 85949 TGGGAAGCAGCTTCTCTTGATGAGTGGTTATACAATGGTGGTCCTTACCAACTTATCGTT 85890 Query 170966 TTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGA 171025 | ||| ||| | | || | | | | ||||||||| | |||||||| |||| | | Sbjct 85889 TGCCATTTCTTCTTAGGCGTTTGTTCATACATGGGTCGTGAGTGGGAATTATCTTTTCGT 85830 Query 171026 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCA 171085 |||| ||| | |||||||| || || ||||||||||| || ||||||| || Sbjct 85829 TTAGGTATGCGTCCTTGGATCGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGCT 85770 Query 171086 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 171145 |||||| | | |||||| ||||||| ||||| ||||||||||||||||| |||||||| Sbjct 85769 GTATTCATCATTTATCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATC 85710 Query 171146 TCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCC 171205 || ||||| |||||||||||| |||| |||||||| || |||||||| || |||||||| Sbjct 85709 TCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCA 85650 Query 171206 TTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGT 171265 ||||||||| ||||| || ||| | || |||||| | ||| ||| ||||||||| Sbjct 85649 TTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGT 85590 Query 171266 TCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAA--AACTACG 171323 || || || || |||||| |||| | || |||||||| ||||| ||| ||| | | Sbjct 85589 TCACTTGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAA--TCAGCTAACGAAG 85532 Query 171324 GCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCG 171383 | || || ||||| |||||||||||||| || ||||| ||||| |||||||| ||||||| Sbjct 85531 GTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCATGGCTACTTCG 85472 Query 171384 GTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCG 171443 || | ||||| ||||| ||||| || ||||||||||||||||||||||| |||||| | | Sbjct 85471 GTCGTTTAATTTTCCAATATGCTTCTTTCAACAACTCTCGTTCATTACATTTCTTCTTAG 85412 Query 171444 CTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCA 171503 ||| | || || || || | ||||| || || | ||||| | || |||||||||| Sbjct 85411 CTGCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTCA 85352 Query 171504 ACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGT-ACCA 171562 || | || || ||||||||||||||||||||||||||| || | || ||| | || Sbjct 85351 ACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGG---TCGTGTAATCA 85295 Query 171563 ACA--TGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAA 171620 ||| |||| ||| || | ||| | || |||||||| |||||||| |||||||| | | Sbjct 85294 ACACTTGGGCAGACATTATCAACCGTGCCAACCTTGGTATGGAAGTAATGCATGAGCGTA 85235 Query 171621 ATGCACACAACTTCCCACTAGACCTAGC 171648 | || |||||||||||| |||| |||| Sbjct 85234 ACGCTCACAACTTCCCATTAGATTTAGC 85207 Score = 334 bits (370), Expect = 9e-87 Identities = 457/636 (72%), Gaps = 8/636 (1%) Strand=Plus/Minus Query 171783 AAAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATC 171842 ||| ||| |||||||| || | ||||| ||| | | || |||||||| || | Sbjct 18104 AAACGAGGTTGGTTTGATGTAGTAGATGACTGGCTTCGTCGTGACCGTTTCGTCTTTCTA 18045 Query 171843 GGATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTA 171902 |||||||| || | ||| | || ||| || ||||| ||| | || |||||||| | Sbjct 18044 GGATGGTCAGGGTTATTATTATTGCCTACAGCATACCTGGCACTTGGTGGTTGGTTTACA 17985 Query 171903 GGAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGA 171962 |||||||| || || || || ||||| || |||||| | ||||| |||||| | || ||| Sbjct 17984 GGAACTACATTTGTAACGTCTTGGTATACTCATGGTTTAGCATCTTCATATTTAGAAGGA 17925 Query 171963 GCAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTG 172022 || || ||||| ||||| || ||||| || | || |||||||||| | |||| Sbjct 17924 TGTAATTTCTTAACAGCAGCTGTTTCAACTCCAGCGAATAGTATGGGTCATTCTTTATTA 17865 Query 172023 TTCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTA 172082 ||||| ||||| || || || ||||| ||| | ||| |||| |||| | ||||| ||| Sbjct 17864 TTCCTTTGGGGCCCAGAAGCTCAAGGCGATTTCACACGTTGGTGTCAACTTGGTGGTCTA 17805 Query 172083 TGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTT 172142 |||| ||||| || | || || | |||| || || ||||| |||||| | |||||| Sbjct 17804 TGGACGTTTGTTGCTCTTCACGGTGCATTTGCTCTGATTGGTTTTATGCTTCGTCAGTTT 17745 Query 172143 GAGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATT 172202 || |||||| | || ||| || |||||||||||| | ||||| |||||| ||| Sbjct 17744 GAAATTGCACGTTCAGTAAAGATTCGCCCTTACAACGCAATTGCATTTTCAGCACCAATT 17685 Query 172203 GCAGTATTCACGAGCATCT---TTC-TAATATATCCATTAGGTCAGCATAGTTGGTTCTT 172258 | |||||| | ||| ||| |||| || || ||||| || | |||||||||| Sbjct 17684 TCTGTATTC----GTTTCTGTATTCTTAATTTACCCTTTAGGACAATCTGGTTGGTTCTT 17629 Query 172259 CGCACCTTCATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCA 172318 ||||| |||||||| || ||||| || || | ||||||||| | || |||||||| Sbjct 17628 TGCACCAAGCTTTGGTGTTGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCA 17569 Query 172319 CAATATAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATT 172378 || ||| | || || || ||||||||||||||||| ||| ||||||| | || | Sbjct 17568 TAACTGGACTTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGAGCTGCTCT 17509 Query 172379 ACTATGTGCCATACATGGTGCAACAGTACAGAACAC 172414 ||| ||||| || ||||| ||||| ||| | || || Sbjct 17508 ACTTTGTGCAATTCATGGCGCAACTGTAGAAAATAC 17473 Score = 334 bits (370), Expect = 9e-87 Identities = 457/636 (72%), Gaps = 8/636 (1%) Strand=Plus/Minus Query 171783 AAAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATC 171842 ||| ||| |||||||| || | ||||| ||| | | || |||||||| || | Sbjct 147549 AAACGAGGTTGGTTTGATGTAGTAGATGACTGGCTTCGTCGTGACCGTTTCGTCTTTCTA 147490 Query 171843 GGATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTA 171902 |||||||| || | ||| | || ||| || ||||| ||| | || |||||||| | Sbjct 147489 GGATGGTCAGGGTTATTATTATTGCCTACAGCATACCTGGCACTTGGTGGTTGGTTTACA 147430 Query 171903 GGAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGA 171962 |||||||| || || || || ||||| || |||||| | ||||| |||||| | || ||| Sbjct 147429 GGAACTACATTTGTAACGTCTTGGTATACTCATGGTTTAGCATCTTCATATTTAGAAGGA 147370 Query 171963 GCAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTG 172022 || || ||||| ||||| || ||||| || | || |||||||||| | |||| Sbjct 147369 TGTAATTTCTTAACAGCAGCTGTTTCAACTCCAGCGAATAGTATGGGTCATTCTTTATTA 147310 Query 172023 TTCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTA 172082 ||||| ||||| || || || ||||| ||| | ||| |||| |||| | ||||| ||| Sbjct 147309 TTCCTTTGGGGCCCAGAAGCTCAAGGCGATTTCACACGTTGGTGTCAACTTGGTGGTCTA 147250 Query 172083 TGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTT 172142 |||| ||||| || | || || | |||| || || ||||| |||||| | |||||| Sbjct 147249 TGGACGTTTGTTGCTCTTCACGGTGCATTTGCTCTGATTGGTTTTATGCTTCGTCAGTTT 147190 Query 172143 GAGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATT 172202 || |||||| | || ||| || |||||||||||| | ||||| |||||| ||| Sbjct 147189 GAAATTGCACGTTCAGTAAAGATTCGCCCTTACAACGCAATTGCATTTTCAGCACCAATT 147130 Query 172203 GCAGTATTCACGAGCATCT---TTC-TAATATATCCATTAGGTCAGCATAGTTGGTTCTT 172258 | |||||| | ||| ||| |||| || || ||||| || | |||||||||| Sbjct 147129 TCTGTATTC----GTTTCTGTATTCTTAATTTACCCTTTAGGACAATCTGGTTGGTTCTT 147074 Query 172259 CGCACCTTCATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCA 172318 ||||| |||||||| || ||||| || || | ||||||||| | || |||||||| Sbjct 147073 TGCACCAAGCTTTGGTGTTGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCA 147014 Query 172319 CAATATAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATT 172378 || ||| | || || || ||||||||||||||||| ||| ||||||| | || | Sbjct 147013 TAACTGGACTTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGAGCTGCTCT 146954 Query 172379 ACTATGTGCCATACATGGTGCAACAGTACAGAACAC 172414 ||| ||||| || ||||| ||||| ||| | || || Sbjct 146953 ACTTTGTGCAATTCATGGCGCAACTGTAGAAAATAC 146918 Score = 168 bits (186), Expect = 8e-37 Identities = 233/325 (72%), Gaps = 2/325 (1%) Strand=Plus/Minus Query 172508 TATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAG 172567 ||||| ||||| || | ||||||||||| || |||||| |||| |||||||| ||| | Sbjct 16353 TATGA--ACTGCAAATCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAATAAACG 16296 Query 172568 ATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGG 172627 | ||||||||| ||||||| || || || || | ||| | |||| | || || Sbjct 16295 TTGGTTACACTTCTTTATGTTATTTGTTCCGGTAACTGGTCTTTGGATGAGTGCAATTGG 16236 Query 172628 TATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGC 172687 | | |||||| | || | ||| | | || || || || || || ||||| || | || Sbjct 16235 TGTAGTAGGTTTAGCTTTAAACTTACGTGCGTATGATTTCGTTTCACAAGAAATTCGCGC 16176 Query 172688 AGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTAT 172747 || ||||| || || |||||||| ||||| || || || |||||| | || |||||||| Sbjct 16175 TGCGGAAGATCCTGAATTTGAAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTAT 16116 Query 172748 GAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGT 172807 | || |||||| | || ||||| || ||||| || |||| ||||| || || || Sbjct 16115 TCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGT 16056 Query 172808 CTTGCCACGAGGCAACGCACTATAA 172832 || ||||| || ||||| || ||| Sbjct 16055 TTTACCACGTGGAAACGCTCTTTAA 16031 Score = 168 bits (186), Expect = 8e-37 Identities = 233/325 (72%), Gaps = 2/325 (1%) Strand=Plus/Minus Query 172508 TATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAG 172567 ||||| ||||| || | ||||||||||| || |||||| |||| |||||||| ||| | Sbjct 145798 TATGA--ACTGCAAATCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAATAAACG 145741 Query 172568 ATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGG 172627 | ||||||||| ||||||| || || || || | ||| | |||| | || || Sbjct 145740 TTGGTTACACTTCTTTATGTTATTTGTTCCGGTAACTGGTCTTTGGATGAGTGCAATTGG 145681 Query 172628 TATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGC 172687 | | |||||| | || | ||| | | || || || || || || ||||| || | || Sbjct 145680 TGTAGTAGGTTTAGCTTTAAACTTACGTGCGTATGATTTCGTTTCACAAGAAATTCGCGC 145621 Query 172688 AGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTAT 172747 || ||||| || || |||||||| ||||| || || || |||||| | || |||||||| Sbjct 145620 TGCGGAAGATCCTGAATTTGAAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTAT 145561 Query 172748 GAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGT 172807 | || |||||| | || ||||| || ||||| || |||| ||||| || || || Sbjct 145560 TCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGT 145501 Query 172808 CTTGCCACGAGGCAACGCACTATAA 172832 || ||||| || ||||| || ||| Sbjct 145500 TTTACCACGTGGAAACGCTCTTTAA 145476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570266654363640