Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micractinium_20conductrix_20[genbank_20GCA_5F002245815.1_202017-08- 10] 301 sequences; 61,020,757 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq286 109 5e-19 seq242 105 6e-18 seq280 104 2e-17 seq53 98.7 9e-16 >seq286 Length=1206827 Score = 109 bits (120), Expect = 5e-19 Identities = 116/152 (76%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 130991 ATCACTTTCACCATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTT 131049 ||||| || | ||| | ||| ||||||| |||||||| | || | ||| |||||||| Sbjct 1113766 ATCACCTTGATCATCATGCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTC 1113707 Query 131050 TGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAA 131109 || |||||||| || || ||||| |||||| ||||||||||| ||| |||| | Sbjct 1113706 TGGATGTTGTAGTCCGCCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGG 1113647 Query 131110 CGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 ||||||||||| || ||||| || || ||||| Sbjct 1113646 CGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 1113615 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| |||||||| | || | ||| |||||||| || |||||||| || Sbjct 1113244 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGC 1113185 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 1113184 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGGGG 1113125 Query 131127 GATTCCTTCTTTGTC 131141 ||| || || ||||| Sbjct 1113124 GATGCCCTCCTTGTC 1113110 >seq242 Length=371688 Score = 105 bits (116), Expect = 6e-18 Identities = 108/140 (77%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061 |||| ||| ||||||| |||||||| | || | ||| |||||||| || |||||||| Sbjct 197789 ATGATGCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAG 197848 Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 || || ||||| |||||| ||||||||||| ||| |||| | ||||||||||| Sbjct 197849 TCCGCCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCA 197908 Query 131122 GGAGGGATTCCTTCTTTGTC 131141 || ||||| || || ||||| Sbjct 197909 GGGGGGATGCCCTCCTTGTC 197928 >seq280 Length=4282644 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| |||||||| | || | ||| |||||||| || |||||||| || Sbjct 2001468 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGC 2001527 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 2001528 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGG 2001587 Query 131127 GATTCCTTCTTTGTC 131141 ||| || || ||||| Sbjct 2001588 GATGCCCTCCTTGTC 2001602 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||| | |||||||| | || | ||| |||||||| || |||||||| || Sbjct 2002023 GCCACCGCGAAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGC 2002082 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 2002083 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGG 2002142 Query 131127 GATTCCTTCTTTGTC 131141 ||| || || ||||| Sbjct 2002143 GATGCCCTCCTTGTC 2002157 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||| | |||||||| | || | ||| |||||||| || |||||||| || Sbjct 2002578 GCCACCGCGAAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGC 2002637 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 2002638 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGG 2002697 Query 131127 GATTCCTTCTTTGTC 131141 ||| || || ||||| Sbjct 2002698 GATGCCCTCCTTGTC 2002712 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||| | |||||||| | || | ||| |||||||| || |||||||| || Sbjct 2003133 GCCACCGCGAAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGC 2003192 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 2003193 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGG 2003252 Query 131127 GATTCCTTCTTTGTC 131141 ||| || || ||||| Sbjct 2003253 GATGCCCTCCTTGTC 2003267 Score = 98.7 bits (108), Expect = 9e-16 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||| | |||||||| | || | ||| |||||||| || |||||||| || Sbjct 2003693 GCCACCGCGAAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGC 2003752 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 2003753 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGG 2003812 Query 131127 GATTCCT 131133 ||| ||| Sbjct 2003813 GATGCCT 2003819 >seq53 Length=124359 Score = 98.7 bits (108), Expect = 9e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||||| |||||||| | || | ||| |||||||| || |||||||| || | Sbjct 80672 CCTCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 80731 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | ||||||||||| || ||| Sbjct 80732 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 80791 Query 131128 ATTCCTTCT 131136 || ||| || Sbjct 80792 ATGCCTGCT 80800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472011024051840