Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micractinium_20conductrix_20[genbank_20GCA_5F002245815.1_202017-08- 10] 301 sequences; 61,020,757 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq286 89.7 4e-13 seq280 89.7 4e-13 seq242 89.7 4e-13 seq53 87.8 1e-12 >seq286 Length=1206827 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||||||||| || ||||||||||| ||| Sbjct 1113243 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCC 1113184 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||||| || |||||||| | || || ||||| ||||| || Sbjct 1113183 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 1113124 Query 16829 ACGCCCTCTTTGTC 16842 | |||||| ||||| Sbjct 1113123 ATGCCCTCCTTGTC 1113110 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||||||||| || ||||||||||| ||| Sbjct 1113748 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 1113689 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||||| || |||||||| | || || ||||| ||||| || Sbjct 1113688 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 1113629 Query 16829 ACGCCCTCTTTGTC 16842 | |||||| ||||| Sbjct 1113628 ATGCCCTCCTTGTC 1113615 >seq280 Length=4282644 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||||||||| || ||||||||||| ||| Sbjct 2001469 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 2001528 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||||| || |||||||| | || || ||||| ||||| || Sbjct 2001529 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 2001588 Query 16829 ACGCCCTCTTTGTC 16842 | |||||| ||||| Sbjct 2001589 ATGCCCTCCTTGTC 2001602 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||||||||| || ||||||||||| ||| Sbjct 2002024 CCACCGCGAAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 2002083 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||||| || |||||||| | || || ||||| ||||| || Sbjct 2002084 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 2002143 Query 16829 ACGCCCTCTTTGTC 16842 | |||||| ||||| Sbjct 2002144 ATGCCCTCCTTGTC 2002157 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||||||||| || ||||||||||| ||| Sbjct 2002579 CCACCGCGAAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 2002638 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||||| || |||||||| | || || ||||| ||||| || Sbjct 2002639 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 2002698 Query 16829 ACGCCCTCTTTGTC 16842 | |||||| ||||| Sbjct 2002699 ATGCCCTCCTTGTC 2002712 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||||||||| || ||||||||||| ||| Sbjct 2003134 CCACCGCGAAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 2003193 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||||| || |||||||| | || || ||||| ||||| || Sbjct 2003194 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 2003253 Query 16829 ACGCCCTCTTTGTC 16842 | |||||| ||||| Sbjct 2003254 ATGCCCTCCTTGTC 2003267 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||||||||| || ||||||||||| ||| Sbjct 2003694 CCACCGCGAAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 2003753 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTC 16821 | || | ||||||||| || |||||||| | || || ||||| ||||| Sbjct 2003754 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTC 2003806 >seq242 Length=371688 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||||||||| || ||||||||||| ||| Sbjct 197795 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 197854 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||||| || |||||||| | || || ||||| ||||| || Sbjct 197855 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 197914 Query 16829 ACGCCCTCTTTGTC 16842 | |||||| ||||| Sbjct 197915 ATGCCCTCCTTGTC 197928 >seq53 Length=124359 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | ||| |||| ||||| ||||||||||| || ||||||||||| ||| Sbjct 80672 CCTCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 80731 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTC 16821 | || | ||||||||| || |||||||| | || || ||||| ||||| Sbjct 80732 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTC 80784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405086513959990