Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micractinium_20conductrix_20[genbank_20GCA_5F002245815.1_202017-08- 10] 301 sequences; 61,020,757 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq52 735 0.0 >seq52 Length=149364 Score = 735 bits (814), Expect = 0.0 Identities = 744/966 (77%), Gaps = 2/966 (0%) Strand=Plus/Minus Query 166081 AACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACC 166140 |||||| | || | ||||||||||| | ||||| || ||| | || |||| || Sbjct 86162 AACCGTTTATACATCGGTTGGTTTGGTGTGTTAATGATCCCTACTTTATTAACAGCTACT 86103 Query 166141 ATCTGT-TTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGA 166199 || || || ||| |||| || | || || || ||||||||||||||||| |||||||| Sbjct 86102 -TCAGTATTTATCATCGCATTTATCGCAGCTCCGCCTGTCGATATCGATGGTATCCGTGA 86044 Query 166200 GCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCCTC 166259 ||| || |||| || || | ||||| ||||| |||||| |||||||| || | || | Sbjct 86043 GCCTGTTTCAGGTTCATTACTATATGGAAACAATATCATCACTGGTGCTATTATTCCAAC 85984 Query 166260 CTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAATG 166319 || ||||| || ||| | |||||||| || || ||||||||||| || |||||||| || Sbjct 85983 TTCTAACGCTATCGGTTTACACTTCTACCCAATTTGGGAAGCAGCTTCTCTTGATGAGTG 85924 Query 166320 GCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTATGC 166379 | | || || |||||||||| ||| || | || | ||| ||| || | ||| | | | | Sbjct 85923 GTTATACAATGGTGGTCCTTACCAACTTATCGTTTGCCATTTCTTCTTAGGCGTTTGTTC 85864 Query 166380 CTACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGT 166439 |||||||||||||| |||||||| |||| || | ||||||||||||||||| || Sbjct 85863 ATACATGGGTCGTGAGTGGGAATTATCTTTTCGTTTAGGTATGCGTCCTTGGATCGCAGT 85804 Query 166440 AGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCA 166499 || ||||| ||||| ||||| ||||| | || || ||| | | ||||| ||||||| Sbjct 85803 TGCTTACTCAGCACCAGTTGCTGCAGCTACAGCTGTATTCATCATTTATCCAATCGGTCA 85744 Query 166500 AGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGT 166559 ||||||||||||||| | ||||| | |||||| ||| || ||||||| |||| | || Sbjct 85743 AGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGATCGT 85684 Query 166560 CTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGT 166619 |||||||| |||||||||||||| |||||||| ||||||||||| ||||| || ||||| Sbjct 85683 ATTCCAAGCTGAGCACAACATCCTTATGCACCCATTCCATATGCTTGGTGTTGCTGGTGT 85624 Query 166620 ATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCGTCCG 166679 ||| ||||| ||| | ||||| || |||||||| || || ||||| || | | || Sbjct 85623 ATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTTTAATTCG 85564 Query 166680 TGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGAC 166739 ||| || ||||||| || || ||| | |||||||| || |||||||||||||| || Sbjct 85563 TGAAACAACTGAAAACGAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAAC 85504 Query 166740 CTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTT 166799 ||||||||||| || |||||||| ||||||||||| | || |||||||| ||||| || Sbjct 85503 TTACAACATCGTTGCAGCTCATGGCTACTTCGGTCGTTTAATTTTCCAATATGCTTCTTT 85444 Query 166800 CAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTT 166859 |||||||||||| || | || |||||| | || || ||||| ||||| ||||| ||||| Sbjct 85443 CAACAACTCTCGTTCATTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTT 85384 Query 166860 TACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTC 166919 |||||| | ||| || || |||||||||||| | || ||||||||||||||||| || Sbjct 85383 CACTGCTTTAGGTATTTCAACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATC 85324 Query 166920 CATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGG 166979 | | ||| || |||||||| |||||||||||||||| | |||||||||| Sbjct 85323 AGTTGTAGATTCACAAGGTCGTGTAATCAACACTTGGGCAGACATTATCAACCGTGCCAA 85264 Query 166980 TCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGCTGC 167039 || ||||||||||||||||| |||||||| |||||||||||||| | ||| | |||| Sbjct 85263 CCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCATTAGATTTAGCTGT 85204 Query 167040 TGCTGA 167045 || ||| Sbjct 85203 TGTTGA 85198 Score = 408 bits (452), Expect = 5e-109 Identities = 513/704 (73%), Gaps = 0/704 (0%) Strand=Plus/Minus Query 167294 GGGTGGTTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGG 167353 || ||||||||||| | |||||||||||| || ||||| || |||||| | || ||| Sbjct 18098 GGTTGGTTTGATGTAGTAGATGACTGGCTTCGTCGTGACCGTTTCGTCTTTCTAGGATGG 18039 Query 167354 TCTGGATTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACG 167413 || || ||| | | || || || || || |||||| ||||||| ||| |||| || || Sbjct 18038 TCAGGGTTATTATTATTGCCTACAGCATACCTGGCACTTGGTGGTTGGTTTACAGGAACT 17979 Query 167414 ACGTTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACCTTGAGGGTGCTAAT 167473 || ||||| ||| |||||||| || || || || ||| || | || || |||| Sbjct 17978 ACATTTGTAACGTCTTGGTATACTCATGGTTTAGCATCTTCATATTTAGAAGGATGTAAT 17919 Query 167474 TTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTT 167533 || | || ||||| || |||||||| || | ||||||||||||| | | | ||| Sbjct 17918 TTCTTAACAGCAGCTGTTTCAACTCCAGCGAATAGTATGGGTCATTCTTTATTATTCCTT 17859 Query 167534 TGGGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCT 167593 ||||| || || |||| || ||||||| | ||||| || ||||| || || ||| | Sbjct 17858 TGGGGCCCAGAAGCTCAAGGCGATTTCACACGTTGGTGTCAACTTGGTGGTCTATGGACG 17799 Query 167594 TTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATA 167653 ||||| || || ||||| || |||||||| || || ||||||||||| || ||||| || Sbjct 17798 TTTGTTGCTCTTCACGGTGCATTTGCTCTGATTGGTTTTATGCTTCGTCAGTTTGAAATT 17739 Query 167654 AGTAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTC 167713 | |||| || || |||||||| || ||||| ||||| | || ||| |||| Sbjct 17738 GCACGTTCAGTAAAGATTCGCCCTTACAACGCAATTGCATTTTCAGCACCAATTTCTGTA 17679 Query 167714 TTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCG 167773 || || ||||| || | || || ||| | ||||| || |||||||||||||||| Sbjct 17678 TTCGTTTCTGTATTCTTAATTTACCCTTTAGGACAATCTGGTTGGTTCTTTGCACCAAGC 17619 Query 167774 TTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACG 167833 ||||||||||| || || || ||||| | ||||| | || ||||||||||||||||| Sbjct 17618 TTTGGTGTTGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGACT 17559 Query 167834 CTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCA 167893 | |||||||||||||||||||| || || ||| | || || | ||| | |||| |||| Sbjct 17558 TTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGAGCTGCTCTACTTTGTGCA 17499 Query 167894 ATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTC 167953 || ||||| | || ||||| ||||| || | ||| |||||||| |||||||| ||| Sbjct 17498 ATTCATGGCGCAACTGTAGAAAATACGCTTTTTGAGGATGGTGATGGTGCAAACACATTC 17439 Query 167954 AAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGT 167997 || ||| | | ||||| | || ||||| || || ||||| Sbjct 17438 CGTGCTTTTAACCCAACTCAAGCTGAAGAAACATACTCAATGGT 17395 Score = 408 bits (452), Expect = 5e-109 Identities = 513/704 (73%), Gaps = 0/704 (0%) Strand=Plus/Minus Query 167294 GGGTGGTTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGG 167353 || ||||||||||| | |||||||||||| || ||||| || |||||| | || ||| Sbjct 147543 GGTTGGTTTGATGTAGTAGATGACTGGCTTCGTCGTGACCGTTTCGTCTTTCTAGGATGG 147484 Query 167354 TCTGGATTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACG 167413 || || ||| | | || || || || || |||||| ||||||| ||| |||| || || Sbjct 147483 TCAGGGTTATTATTATTGCCTACAGCATACCTGGCACTTGGTGGTTGGTTTACAGGAACT 147424 Query 167414 ACGTTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACCTTGAGGGTGCTAAT 167473 || ||||| ||| |||||||| || || || || ||| || | || || |||| Sbjct 147423 ACATTTGTAACGTCTTGGTATACTCATGGTTTAGCATCTTCATATTTAGAAGGATGTAAT 147364 Query 167474 TTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTT 167533 || | || ||||| || |||||||| || | ||||||||||||| | | | ||| Sbjct 147363 TTCTTAACAGCAGCTGTTTCAACTCCAGCGAATAGTATGGGTCATTCTTTATTATTCCTT 147304 Query 167534 TGGGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCT 167593 ||||| || || |||| || ||||||| | ||||| || ||||| || || ||| | Sbjct 147303 TGGGGCCCAGAAGCTCAAGGCGATTTCACACGTTGGTGTCAACTTGGTGGTCTATGGACG 147244 Query 167594 TTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATA 167653 ||||| || || ||||| || |||||||| || || ||||||||||| || ||||| || Sbjct 147243 TTTGTTGCTCTTCACGGTGCATTTGCTCTGATTGGTTTTATGCTTCGTCAGTTTGAAATT 147184 Query 167654 AGTAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTC 167713 | |||| || || |||||||| || ||||| ||||| | || ||| |||| Sbjct 147183 GCACGTTCAGTAAAGATTCGCCCTTACAACGCAATTGCATTTTCAGCACCAATTTCTGTA 147124 Query 167714 TTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCG 167773 || || ||||| || | || || ||| | ||||| || |||||||||||||||| Sbjct 147123 TTCGTTTCTGTATTCTTAATTTACCCTTTAGGACAATCTGGTTGGTTCTTTGCACCAAGC 147064 Query 167774 TTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACG 167833 ||||||||||| || || || ||||| | ||||| | || ||||||||||||||||| Sbjct 147063 TTTGGTGTTGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGACT 147004 Query 167834 CTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCA 167893 | |||||||||||||||||||| || || ||| | || || | ||| | |||| |||| Sbjct 147003 TTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGAGCTGCTCTACTTTGTGCA 146944 Query 167894 ATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTC 167953 || ||||| | || ||||| ||||| || | ||| |||||||| |||||||| ||| Sbjct 146943 ATTCATGGCGCAACTGTAGAAAATACGCTTTTTGAGGATGGTGATGGTGCAAACACATTC 146884 Query 167954 AAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGT 167997 || ||| | | ||||| | || ||||| || || ||||| Sbjct 146883 CGTGCTTTTAACCCAACTCAAGCTGAAGAAACATACTCAATGGT 146840 Score = 219 bits (242), Expect = 5e-52 Identities = 239/315 (76%), Gaps = 2/315 (1%) Strand=Plus/Minus Query 167999 ACTGCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTG 168058 ||||| || || |||||||| |||||||||||| | ||||| ||||| |||||||| Sbjct 16348 ACTGCAAATCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAATAAACGTTGGTTA 16289 Query 168059 CACTTCTTTATGCTTTTCGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATC 168118 |||||||||||| | || ||||| || | || ||||||| ||| | |||||| | | Sbjct 16288 CACTTCTTTATGTTATTTGTTCCGGTAACTGGTCTTTGGATGAGTGCAATTGGTGTAGTA 16229 Query 168119 GGTCTCGCACTTAATCTT-CGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGA 168177 ||| | || |||| ||| ||||| ||||| || || || || ||| || | || || || Sbjct 16228 GGTTTAGCT-TTAAACTTACGTGCGTATGATTTCGTTTCACAAGAAATTCGCGCTGCGGA 16170 Query 168178 GGATCCAGAGTTTGAAACTTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGC 168237 ||||| || ||||||||||||||||| ||||| || || | || ||||| | ||||| Sbjct 16169 AGATCCTGAATTTGAAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGC 16110 Query 168238 CTGGATGGCTCCAGTAGACCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCC 168297 ||||||||| | ||| || || |||||||| |||||||||| || || || || || Sbjct 16109 TTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACC 16050 Query 168298 AAGAGGCAACGCTCT 168312 | | || |||||||| Sbjct 16049 ACGTGGAAACGCTCT 16035 Score = 219 bits (242), Expect = 5e-52 Identities = 239/315 (76%), Gaps = 2/315 (1%) Strand=Plus/Minus Query 167999 ACTGCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTG 168058 ||||| || || |||||||| |||||||||||| | ||||| ||||| |||||||| Sbjct 145793 ACTGCAAATCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAATAAACGTTGGTTA 145734 Query 168059 CACTTCTTTATGCTTTTCGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATC 168118 |||||||||||| | || ||||| || | || ||||||| ||| | |||||| | | Sbjct 145733 CACTTCTTTATGTTATTTGTTCCGGTAACTGGTCTTTGGATGAGTGCAATTGGTGTAGTA 145674 Query 168119 GGTCTCGCACTTAATCTT-CGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGA 168177 ||| | || |||| ||| ||||| ||||| || || || || ||| || | || || || Sbjct 145673 GGTTTAGCT-TTAAACTTACGTGCGTATGATTTCGTTTCACAAGAAATTCGCGCTGCGGA 145615 Query 168178 GGATCCAGAGTTTGAAACTTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGC 168237 ||||| || ||||||||||||||||| ||||| || || | || ||||| | ||||| Sbjct 145614 AGATCCTGAATTTGAAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGC 145555 Query 168238 CTGGATGGCTCCAGTAGACCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCC 168297 ||||||||| | ||| || || |||||||| |||||||||| || || || || || Sbjct 145554 TTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACC 145495 Query 168298 AAGAGGCAACGCTCT 168312 | | || |||||||| Sbjct 145494 ACGTGGAAACGCTCT 145480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567229865789600