Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micractinium_20conductrix_20[genbank_20GCA_5F002245815.1_202017-08- 10] 301 sequences; 61,020,757 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq271 118 2e-21 seq225 114 3e-20 seq3 98.7 2e-15 >seq271 Length=1385635 Score = 118 bits (130), Expect = 2e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 279711 GGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTCCTA 279770 ||||| ||||||||||||||||| || | |||||||| || || ||||| || | Sbjct 1111523 GGTGGCTGGAAGATGAAGCTGGCTCTGGCCCGCGCCATGCTCATGAACGCCGACATCATG 1111582 Query 279771 CTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCCTAC 279830 ||||| |||||||| |||||||| ||||||||||||| || |||||||| || |||| Sbjct 1111583 CTGCTGGATGAGCCCACCAACCATCTGGACACCACCAATGTGGCCTGGCTGGTCAGCTAC 1111642 Query 279831 CTAACCAGTCTGAAG 279845 || ||| | |||||| Sbjct 1111643 CTGACCGGCCTGAAG 1111657 Score = 111 bits (122), Expect = 3e-19 Identities = 176/250 (70%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 278721 GCTCTCATCAAGTGTTGTGCGTCCATCGGCAACAAGGACATCGAACCATTCATTGCCCAT 278780 || |||| |||||| || | |||| |||||| ||||| || || || | |||| Sbjct 1109013 GCGCTCACCAAGTGCTGCACCGCCATTGGCAACCGCGACATTGAGCCCTTTGTGCCCCAC 1109072 Query 278781 CTGATC-GCTGCAATCTCTGATAGCAGTCAGGTCCCGGAATGCGTCCATCAGCTATCTGC 278839 |||||| |||||| || | | | |||| || || ||||| || |||| || || Sbjct 1109073 CTGATCCGCTGCA-TCGGCGCACCCGGCGAGGTGCCCGACTGCGTGCACAAGCTGTCGGC 1109131 Query 278840 AACCACATTCGTCCAGACCGTTGATGCTCGCACTCTTGCTGTCCTGGTACCTCTGCTATG 278899 ||||| ||||| ||| | || || || ||||| || | ||||||| || ||||| Sbjct 1109132 GACCACGTTCGTGCAGTCTGTGGACGCGCGCACCCTGTCCATCCTGGTGCCCCTGCTGGT 1109191 Query 278900 CCGTGGTATTGTGGACCGCACTACCGTGGTGCGCCGCAAGACCTGTGTCATCATCAACAA 278959 || ||| | |||||||| ||| | ||||||||| |||| ||||||||| ||| Sbjct 1109192 GCGCGGTCTCACTGACCGCACCACCCCCATCCGCCGCAAGGCCTGCGTCATCATCCGCAA 1109251 Query 278960 CATGGCCAAG 278969 |||||||||| Sbjct 1109252 CATGGCCAAG 1109261 Score = 96.9 bits (106), Expect = 7e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 280606 AGGATGCCGCTGCCAATGGTCTGCTAGGGAAACCTCTGACTGCCAAGAATGTTGAGGACC 280665 |||| ||||| ||| || ||| || || || ||||| |||||||| || ||||| Sbjct 1113985 AGGAGGCCGCCGCCGCCGGCCTGGCCGGCAAGCCCCTGACCGCCAAGAACGTGGAGGAGA 1114044 Query 280666 ATATGACCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTT 280725 || ||| ||||| ||| | |||||||| | || ||||| | || ||||| || | Sbjct 1114045 TGCTGCACAACCTGGGCCTGCCCGCCGAGTTTGCCACCCACTCCCAGATCCGCGGCCTGT 1114104 Query 280726 CTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCAC 280781 |||| |||||||||||||| || || | || || || ||||||| || || ||| Sbjct 1114105 CTGGTGGCCAGAAGGTCAAGCTGGTGCTGGGCGCCGCCATGTGGCAGCAGCCACAC 1114160 >seq225 Length=1776192 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 1653610 AGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1653669 Query 142563 CCCCACATCGGGC 142575 ||||||||||||| Sbjct 1653670 CCCCACATCGGGC 1653682 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 1683507 AGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1683448 Query 142563 CCCCACATCGGGC 142575 ||||||||||||| Sbjct 1683447 CCCCACATCGGGC 1683435 >seq3 Length=2670593 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 280224 GGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTAC 280283 |||||||||| ||| || || || |||||||| |||||| ||||| |||| ||| Sbjct 2302057 GGCGAGACCCTGGCGGACGATGGCGTGGTGTGGAAGCACCCCAACCTGCGGCTGGCCTAC 2301998 Query 280284 GTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATAC 280343 || || |||||||| ||||||||| | ||| | |||||||||||||| || || ||| Sbjct 2301997 GTGGCGCAGCACGCCTTCCACCACGTGGAGCAGCACCTGGACATGACGCCCGCGCAGTAC 2301938 Query 280344 ATTCAGTGGCGCTA 280357 || |||||| || Sbjct 2301937 ATCTGGTGGCGGTA 2301924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027832836083141