Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micractinium_20conductrix_20[genbank_20GCA_5F002245815.1_202017-08- 10] 301 sequences; 61,020,757 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq52 814 0.0 >seq52 Length=149364 Score = 814 bits (902), Expect = 0.0 Identities = 778/993 (78%), Gaps = 2/993 (0%) Strand=Plus/Plus Query 7529 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATG 7588 ||| || |||| | || | |||||||||||||| |||||||| ||||| |||||||| Sbjct 85198 TCAACAACAGCTAAATCTAATGGGAAGTTGTGAGCGTTACGCTCATGCATTACTTCCATA 85257 Query 7589 CCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCA 7648 ||||| |||||||||| | ||||||||| ||||| | ||||||||||| ||| Sbjct 85258 CCAAGGTTGGCACGGTTGATAATGTCTGCCCAAGTGTTGATTACACGACCTTGTGAATCT 85317 Query 7649 ATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGA 7708 | | || ||||||||||||||||| || | |||||||||||| || || ||| | | Sbjct 85318 ACAACTGATTGGTTGAAGTTGAAACCATTTAAGTTGAATGCCATAGTTGAAATACCTAAA 85377 Query 7709 GCAGTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAG 7768 ||||||||||| || |||||||||||||| || || | |||||| || | ||||| ||| Sbjct 85378 GCAGTGAACCAAATACCAACAACTGGCCAAGCAGCTAAGAAGAAATGTAATGAACGAGAG 85437 Query 7769 TTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATG 7828 |||||||| ||||| |||||||| || | |||||| ||||| || ||||| ||||||||| Sbjct 85438 TTGTTGAAAGAAGCATATTGGAAAATTAAACGACCGAAGTAGCCATGAGCTGCAACGATG 85497 Query 7829 TTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTG 7888 ||||| || ||||||||||||||||| || ||||| | ||| || || ||||| Sbjct 85498 TTGTAAGTTTCTTCTTCTTGACCGAATTTGTAACCTTCGTTAGCTGATTCGTTTTCAGTT 85557 Query 7889 GTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCA 7948 |||||||||| | |||||| |||||||| ||||| ||||| ||| ||| | |||||| Sbjct 85558 GTTTCACGAATTAAAGAAGAAGTTACAAGTGAACCGTGCATAGCAGAGAATAATGAACCA 85617 Query 7949 CCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCT 8008 ||||| |||||||| || || ||||| ||||| |||||||| |||||||||||||| ||| Sbjct 85618 CCAAATACACCAGCAACACCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCAGCT 85677 Query 8009 TGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAA 8068 ||||| || | |||| ||||||| ||||||||||| || | ||||||| | ||||||||| Sbjct 85678 TGGAATACGATCATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAA 85737 Query 8069 GAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAG 8128 ||||||||||||| ||||| | || ||||||||| | |||||||||||||| || ||| Sbjct 85738 GAACCTTGACCGATTGGATAAATGATGAATACAGCTGTAGCTGCAGCAACTGGTGCTGAG 85797 Query 8129 TATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCC 8188 || || || |||||| ||||||||||||| ||| |||| | |||||||||||||||| Sbjct 85798 TAAGCAACTGCGATCCAAGGACGCATACCTAAACGAAAAGATAATTCCCACTCACGACCC 85857 Query 8189 ATGTATGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTG 8248 ||||||| | | | || | | ||| ||| | | | |||||| |||||||||| ||| Sbjct 85858 ATGTATGAACAAACGCCTAAGAAGAAATGGCAAACGATAAGTTGGTAAGGACCACCATTG 85917 Query 8249 TAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCG 8308 || | ||||||||||||||||||||||||||| || || |||||||| | ||| |||||| Sbjct 85918 TATAACCACTCATCAAGAGAAGCTGCTTCCCAAATTGGGTAGAAGTGTAAACCGATAGCG 85977 Query 8309 TTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCG 8368 ||||||| |||| || |||||||| |||||| ||||| ||||| | | ||||| | Sbjct 85978 TTAGAAGTTGGAATAATAGCACCAGTGATGATATTGTTTCCATATAGTAATGAACCTGAA 86037 Query 8369 ACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA- 8427 || || |||||||| || || || || ||||| ||||| |||| || |||| ||| || Sbjct 86038 ACAGGCTCACGGATACCATCGATATCGACAGGCGGAGCTGCGATAAATGCGATGATAAAT 86097 Query 8428 ACAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAG 8487 || | || ||| | | | ||||| ||||| | ||||| |||||||||| || | Sbjct 86098 ACTGA-AGTAGCTGTTAATAAAGTAGGGATCATTAACACACCAAACCAACCGATGTATAA 86156 Query 8488 ACGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 ||| || | ||| |||||||| | ||| || Sbjct 86157 ACGGTTTTCAGTGCTAGTTACCCACTCACAAAA 86189 Score = 421 bits (466), Expect = 8e-113 Identities = 524/717 (73%), Gaps = 2/717 (0%) Strand=Plus/Plus Query 6578 ACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTGAAAGTATTTGATTGT 6637 ||||| || || || || || |||| || || | ||| || ||| || |||| Sbjct 17395 ACCATTGAGTATGTTTCTTCAGCTTGAGTTGGGTTAAAAGCACGGAATGTGTTTGCACCA 17454 Query 6638 TCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATAGCACAGAGCAATGCT 6697 |||||||| ||||| | ||||| |||||||| || || ||||| ||||| || | || Sbjct 17455 TCACCATCCTCAAAAAGCGTATTTTCTACAGTTGCGCCATGAATTGCACAAAGTAGAGCA 17514 Query 6698 CCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAG 6757 | || | | ||| ||||||||||||||||| || ||||| | |||||||| ||||| Sbjct 17515 GCTCCAAGTACACCCGCTACACCCATCATATGGAAAGGGTTTAAAGTCCAGTTATGGAAA 17574 Query 6758 CCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAACGACGGCGCAAAGAAC 6817 || || | ||| | | ||| ||||| || || ||||||||||| || ||||||||| Sbjct 17575 CCTTGGAAGAATAAAATGAATCGGAAAATTGCAGCAACACCAAAGCTTGGTGCAAAGAAC 17634 Query 6818 CAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAGACAGCAATGGGACCA 6877 |||| || ||||| | ||| || || | || ||||| || || |||| ||| || | Sbjct 17635 CAACCAGATTGTCCTAAAGGGTAAATTAAGAATACAGAAACGAATACAGAAATTGGTGCT 17694 Query 6878 GAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGACGTGCGATCTCAAACTGCCGA 6937 ||||| || ||||| ||||| || ||||| ||| |||||| || |||||||| ||| Sbjct 17695 GAAAATGCAATTGCGTTGTAAGGGCGAATCTTTACTGAACGTGCAATTTCAAACTGACGA 17754 Query 6938 AGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAAAGGCCATAGTCCCCCA 6997 ||||| ||||| || || ||||| || ||||| || || ||||| | |||||| || ||| Sbjct 17755 AGCATAAAACCAATCAGAGCAAATGCACCGTGAAGAGCAACAAACGTCCATAGACCACCA 17814 Query 6998 AGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCATAGAAGAAGTAGGGAA 7057 ||||| ||| || |||||| || ||||||||||| ||||| || | | || ||| Sbjct 17815 AGTTGACACCAACGTGTGAAATCGCCTTGAGCTTCTGGGCCCCAAAGGAATAATAAAGAA 17874 Query 7058 TGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAAATTACATCCCTCAAGA 7117 || || | | | || |||||||| ||||| || || | |||||||||||| || | | Sbjct 17875 TGACCCATACTATTCGCTGGAGTTGAAACAGCTGCTGTTAAGAAATTACATCCTTCTAAA 17934 Query 7118 TACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGTTGTGCCCGTGAGCCAA 7177 || ||||| || | || ||||| ||||| ||| || || || || || || | |||| Sbjct 17935 TATGAAGATGCTAAACCATGAGTATACCAAGACGTTACAAATGTAGTTCCTGTAAACCAA 17994 Query 7178 CCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGACCAACCAACAAAAACG 7237 || || ||||||||||| || ||||| || | | | |||||||| || | ||| ||| Sbjct 17995 CCACCAAGTGCCAGGTATGCTGTAGGCAATAATAATAACCCTGACCATCCTAGAAAGACG 18054 Query 7238 AACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAACCACCCCCTTGTTGTTCTT 7294 || | ||||| |||||||||||| | |||||||||||| ||| ||| ||||| Sbjct 18055 AAACGGTCACGACGAAGCCAGTCATCTACTACATCAAACCA--ACCTCGTTTTTCTT 18109 Score = 421 bits (466), Expect = 8e-113 Identities = 524/717 (73%), Gaps = 2/717 (0%) Strand=Plus/Plus Query 6578 ACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTGAAAGTATTTGATTGT 6637 ||||| || || || || || |||| || || | ||| || ||| || |||| Sbjct 146840 ACCATTGAGTATGTTTCTTCAGCTTGAGTTGGGTTAAAAGCACGGAATGTGTTTGCACCA 146899 Query 6638 TCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATAGCACAGAGCAATGCT 6697 |||||||| ||||| | ||||| |||||||| || || ||||| ||||| || | || Sbjct 146900 TCACCATCCTCAAAAAGCGTATTTTCTACAGTTGCGCCATGAATTGCACAAAGTAGAGCA 146959 Query 6698 CCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAG 6757 | || | | ||| ||||||||||||||||| || ||||| | |||||||| ||||| Sbjct 146960 GCTCCAAGTACACCCGCTACACCCATCATATGGAAAGGGTTTAAAGTCCAGTTATGGAAA 147019 Query 6758 CCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAACGACGGCGCAAAGAAC 6817 || || | ||| | | ||| ||||| || || ||||||||||| || ||||||||| Sbjct 147020 CCTTGGAAGAATAAAATGAATCGGAAAATTGCAGCAACACCAAAGCTTGGTGCAAAGAAC 147079 Query 6818 CAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAGACAGCAATGGGACCA 6877 |||| || ||||| | ||| || || | || ||||| || || |||| ||| || | Sbjct 147080 CAACCAGATTGTCCTAAAGGGTAAATTAAGAATACAGAAACGAATACAGAAATTGGTGCT 147139 Query 6878 GAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGACGTGCGATCTCAAACTGCCGA 6937 ||||| || ||||| ||||| || ||||| ||| |||||| || |||||||| ||| Sbjct 147140 GAAAATGCAATTGCGTTGTAAGGGCGAATCTTTACTGAACGTGCAATTTCAAACTGACGA 147199 Query 6938 AGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAAAGGCCATAGTCCCCCA 6997 ||||| ||||| || || ||||| || ||||| || || ||||| | |||||| || ||| Sbjct 147200 AGCATAAAACCAATCAGAGCAAATGCACCGTGAAGAGCAACAAACGTCCATAGACCACCA 147259 Query 6998 AGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCATAGAAGAAGTAGGGAA 7057 ||||| ||| || |||||| || ||||||||||| ||||| || | | || ||| Sbjct 147260 AGTTGACACCAACGTGTGAAATCGCCTTGAGCTTCTGGGCCCCAAAGGAATAATAAAGAA 147319 Query 7058 TGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAAATTACATCCCTCAAGA 7117 || || | | | || |||||||| ||||| || || | |||||||||||| || | | Sbjct 147320 TGACCCATACTATTCGCTGGAGTTGAAACAGCTGCTGTTAAGAAATTACATCCTTCTAAA 147379 Query 7118 TACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGTTGTGCCCGTGAGCCAA 7177 || ||||| || | || ||||| ||||| ||| || || || || || || | |||| Sbjct 147380 TATGAAGATGCTAAACCATGAGTATACCAAGACGTTACAAATGTAGTTCCTGTAAACCAA 147439 Query 7178 CCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGACCAACCAACAAAAACG 7237 || || ||||||||||| || ||||| || | | | |||||||| || | ||| ||| Sbjct 147440 CCACCAAGTGCCAGGTATGCTGTAGGCAATAATAATAACCCTGACCATCCTAGAAAGACG 147499 Query 7238 AACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAACCACCCCCTTGTTGTTCTT 7294 || | ||||| |||||||||||| | |||||||||||| ||| ||| ||||| Sbjct 147500 AAACGGTCACGACGAAGCCAGTCATCTACTACATCAAACCA--ACCTCGTTTTTCTT 147554 Score = 196 bits (216), Expect = 6e-45 Identities = 234/315 (74%), Gaps = 2/315 (1%) Strand=Plus/Plus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | ||| || || || ||||| ||||||| |||||||| || ||||| Sbjct 16035 AGAGCGTTTCCACGTGGTAAAACCTCCTCAGGGAATACAAGTTTTTCATGAGGCTGATCT 16094 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | |||||||| ||||| | |||||| || || || || || || |||||||| || Sbjct 16095 TGAGCAGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTTGTATAGAAAGTT 16154 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTC-TAAG 6441 || || || ||||| ||||| || | || ||||||||||| || ||||| || | |||| Sbjct 16155 TCAAATTCAGGATCTTCCGCAGCGCGAATTTCTTGTGAAACGAAATCATACGCACGTAAG 16214 Query 6442 GTTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAA 6501 |||| || | ||| | | |||||| | |||||||||| | || |||||||| Sbjct 16215 TTTAA-AGCTAAACCTACTACACCAATTGCACTCATCCAAAGACCAGTTACCGGAACAAA 16273 Query 6502 CAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCA 6561 | ||||||||| |||| |||||| ||||| || || | |||||| || || ||||| Sbjct 16274 TAACATAAAGAAGTGTAACCAACGTTTATTTGAAAAAGCTACACCAAAAATTTGTGACCA 16333 Query 6562 GAAACGATTAGCCGT 6576 ||||||||| || || Sbjct 16334 GAAACGATTTGCAGT 16348 Score = 196 bits (216), Expect = 6e-45 Identities = 234/315 (74%), Gaps = 2/315 (1%) Strand=Plus/Plus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | ||| || || || ||||| ||||||| |||||||| || ||||| Sbjct 145480 AGAGCGTTTCCACGTGGTAAAACCTCCTCAGGGAATACAAGTTTTTCATGAGGCTGATCT 145539 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | |||||||| ||||| | |||||| || || || || || || |||||||| || Sbjct 145540 TGAGCAGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTTGTATAGAAAGTT 145599 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTC-TAAG 6441 || || || ||||| ||||| || | || ||||||||||| || ||||| || | |||| Sbjct 145600 TCAAATTCAGGATCTTCCGCAGCGCGAATTTCTTGTGAAACGAAATCATACGCACGTAAG 145659 Query 6442 GTTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAA 6501 |||| || | ||| | | |||||| | |||||||||| | || |||||||| Sbjct 145660 TTTAA-AGCTAAACCTACTACACCAATTGCACTCATCCAAAGACCAGTTACCGGAACAAA 145718 Query 6502 CAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCA 6561 | ||||||||| |||| |||||| ||||| || || | |||||| || || ||||| Sbjct 145719 TAACATAAAGAAGTGTAACCAACGTTTATTTGAAAAAGCTACACCAAAAATTTGTGACCA 145778 Query 6562 GAAACGATTAGCCGT 6576 ||||||||| || || Sbjct 145779 GAAACGATTTGCAGT 145793 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 176122 TGGGCAGGGAGGGATTTGAACCCCCGTAGGCAGAGCCAGCGGATTTACAGTCCGCCTCCA 176181 ||||| | | ||||||||||| |||||||| |||||||| ||||||| |||||| ||| Sbjct 47013 TGGGCCGAGCTGGATTTGAACCAGCGTAGGCAAAGCCAGCGAATTTACAATCCGCCCCCA 47072 Query 176182 TTAACCACTCGGACACCTACCCT 176204 |||||||||||| || | ||||| Sbjct 47073 TTAACCACTCGGGCATCGACCCT 47095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622122459255440