Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micractinium_20conductrix_20[genbank_20GCA_5F002245815.1_202017-08- 10] 301 sequences; 61,020,757 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq280 114 1e-20 seq286 109 6e-19 seq242 105 8e-18 seq53 98.7 1e-15 >seq280 Length=4282644 Score = 114 bits (126), Expect = 1e-20 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| |||||||| | || ||||| || Sbjct 2001481 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGGCCG 2001540 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| ||||| |||| |||||||||||||| ||| | || ||||||| Sbjct 2001541 TCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTG 2001600 Query 46499 TCC 46501 ||| Sbjct 2001601 TCC 2001603 Score = 114 bits (126), Expect = 1e-20 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| |||||||| | || ||||| || Sbjct 2002036 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGGCCG 2002095 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| ||||| |||| |||||||||||||| ||| | || ||||||| Sbjct 2002096 TCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTG 2002155 Query 46499 TCC 46501 ||| Sbjct 2002156 TCC 2002158 Score = 114 bits (126), Expect = 1e-20 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| |||||||| | || ||||| || Sbjct 2002591 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGGCCG 2002650 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| ||||| |||| |||||||||||||| ||| | || ||||||| Sbjct 2002651 TCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTG 2002710 Query 46499 TCC 46501 ||| Sbjct 2002711 TCC 2002713 Score = 114 bits (126), Expect = 1e-20 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| |||||||| | || ||||| || Sbjct 2003146 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGGCCG 2003205 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| ||||| |||| |||||||||||||| ||| | || ||||||| Sbjct 2003206 TCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTG 2003265 Query 46499 TCC 46501 ||| Sbjct 2003266 TCC 2003268 Score = 98.7 bits (108), Expect = 1e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| |||||||| | || ||||| || Sbjct 2003706 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGGCCG 2003765 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 || || ||||||||||| ||||| |||| |||||||||||||| ||| Sbjct 2003766 TCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGG 2003812 >seq286 Length=1206827 Score = 109 bits (120), Expect = 6e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| |||||||| | || ||||| || Sbjct 1113231 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGCGTGCGGCCG 1113172 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| ||||| |||| |||||||||||||| || | || ||||||| Sbjct 1113171 TCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 1113112 Query 46499 TCC 46501 ||| Sbjct 1113111 TCC 1113109 Score = 109 bits (120), Expect = 6e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| |||||||| | || ||||| || Sbjct 1113736 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGGCCG 1113677 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| ||||| |||| |||||||||||||| || | || ||||||| Sbjct 1113676 TCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 1113617 Query 46499 TCC 46501 ||| Sbjct 1113616 TCC 1113614 >seq242 Length=371688 Score = 105 bits (116), Expect = 8e-18 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| |||||||| | || ||||| || Sbjct 197807 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGGCCG 197866 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| ||||| |||| |||||||||||| | || | || ||||||| Sbjct 197867 TCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 197926 Query 46499 TCC 46501 ||| Sbjct 197927 TCC 197929 >seq53 Length=124359 Score = 98.7 bits (108), Expect = 1e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| |||||||| | || ||||| || Sbjct 80684 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGGCCG 80743 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 || || ||||||||||| ||||| |||| |||||||||||||| ||| Sbjct 80744 TCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGG 80790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565236273290520