Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micractinium_20conductrix_20[genbank_20GCA_5F002245815.1_202017-08- 10] 301 sequences; 61,020,757 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq286 113 5e-20 seq280 111 2e-19 seq242 109 5e-19 seq53 95.1 1e-14 >seq286 Length=1206827 Score = 113 bits (124), Expect = 5e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| || ||| ||||||| ||||| || || | ||||||||| |||||||| Sbjct 1113110 GACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAG 1113169 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| ||||| || |||||||||||||| ||||| | || ||||| |||||||| Sbjct 1113170 GACGGCCGCACGCTGGCAGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 1113229 Query 38457 CGTTTGAGAGGCGGC 38471 || || | |||||| Sbjct 1113230 CGCCTGCGCGGCGGC 1113244 Score = 113 bits (124), Expect = 5e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| || ||| ||||||| ||||| || || | ||||||||| |||||||| Sbjct 1113615 GACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAG 1113674 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| ||||| || |||||||||||||| ||||| | || ||||| |||||||| Sbjct 1113675 GACGGCCGCACGCTGGCGGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 1113734 Query 38457 CGTTTGAGAGGCGGC 38471 || || | |||||| Sbjct 1113735 CGCCTGCGCGGCGGC 1113749 >seq280 Length=4282644 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| || || ||||||| ||||| || || | ||||||||| |||||||| Sbjct 2001602 GACAAGGAGGGCATCCCGCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAG 2001543 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| ||||| || |||||||||||||| ||||| | || ||||| |||||||| Sbjct 2001542 GACGGCCGCACGCTGGCGGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 2001483 Query 38457 CGTTTGAGAGGCGGCC 38472 || || | ||||||| Sbjct 2001482 CGCCTGCGCGGCGGCC 2001467 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| || || ||||||| ||||| || || | ||||||||| |||||||| Sbjct 2002157 GACAAGGAGGGCATCCCGCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAG 2002098 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| ||||| || |||||||||||||| ||||| | || ||||| |||||||| Sbjct 2002097 GACGGCCGCACGCTGGCGGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 2002038 Query 38457 CG 38458 || Sbjct 2002037 CG 2002036 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| || || ||||||| ||||| || || | ||||||||| |||||||| Sbjct 2002712 GACAAGGAGGGCATCCCGCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAG 2002653 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| ||||| || |||||||||||||| ||||| | || ||||| |||||||| Sbjct 2002652 GACGGCCGCACGCTGGCGGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 2002593 Query 38457 CG 38458 || Sbjct 2002592 CG 2002591 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| || || ||||||| ||||| || || | ||||||||| |||||||| Sbjct 2003267 GACAAGGAGGGCATCCCGCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAG 2003208 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| ||||| || |||||||||||||| ||||| | || ||||| |||||||| Sbjct 2003207 GACGGCCGCACGCTGGCGGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 2003148 Query 38457 CG 38458 || Sbjct 2003147 CG 2003146 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/109 (80%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 38351 TCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 ||||||| ||||| ||||| || || | ||||||||| |||||||| |||| ||||| | Sbjct 2003814 TCCCGCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCCGCACGC 2003755 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 | |||||||||||||| ||||| | || ||||| |||||||||| Sbjct 2003754 TGGCGGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCG 2003706 >seq242 Length=371688 Score = 109 bits (120), Expect = 5e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| || ||| | ||||| ||||| || || | ||||||||| |||||||| Sbjct 197928 GACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAG 197869 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| ||||| || |||||||||||||| ||||| | || ||||| |||||||| Sbjct 197868 GACGGCCGCACGCTGGCGGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 197809 Query 38457 CGTTTGAGAGGCGGC 38471 || || | |||||| Sbjct 197808 CGCCTGCGCGGCGGC 197794 >seq53 Length=124359 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/109 (80%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 38351 TCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 ||||||| ||||| ||||| || || | ||||||||| |||||||| |||| ||||| | Sbjct 80792 TCCCGCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCCGCACGC 80733 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 | |||||||||||||| ||||| | || ||||| |||||||||| Sbjct 80732 TGGCGGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCG 80684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170918099840