Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micractinium_20conductrix_20[genbank_20GCA_5F002245815.1_202017-08- 10] 301 sequences; 61,020,757 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq52 765 0.0 >seq52 Length=149364 Score = 765 bits (848), Expect = 0.0 Identities = 755/973 (78%), Gaps = 2/973 (0%) Strand=Plus/Minus Query 179748 TTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTTCTG 179807 || || ||||||||||| || | ||||| | || |||||||||| || || | Sbjct 86189 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGTTA 86130 Query 179808 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 179866 ||||| || ||| | || |||| ||| || | || ||| |||| || ||||| ||||| Sbjct 86129 ATGATCCCTACTTTATTAACAGCTACT-TCAGTATTTATCATCGCATTTATCGCAGCTCC 86071 Query 179867 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 179926 ||||| || |||||||| |||||||| || || | |||||| | | ||||| ||||| Sbjct 86070 GCCTGTCGATATCGATGGTATCCGTGAGCCTGTTTCAGGTTCATTACTATATGGAAACAA 86011 Query 179927 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 179986 |||||| ||||||| || |||| |||| ||||| || ||| | |||||||| || || Sbjct 86010 TATCATCACTGGTGCTATTATTCCAACTTCTAACGCTATCGGTTTACACTTCTACCCAAT 85951 Query 179987 CTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTCGT 180046 |||||||| || || ||||| |||||| | || || |||||||||| ||||||| |||| Sbjct 85950 TTGGGAAGCAGCTTCTCTTGATGAGTGGTTATACAATGGTGGTCCTTACCAACTTATCGT 85891 Query 180047 CTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTTTCTTATCG 180106 | ||| ||| | | ||| | | | | ||||||||||||||||||||| | |||| ||| Sbjct 85890 TTGCCATTTCTTCTTAGGCGTTTGTTCATACATGGGTCGTGAGTGGGAATTATCTTTTCG 85831 Query 180107 CTTGGGTATGCGCCCCTGGATCTGCGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGC 180166 || |||||||| || |||||| || || || || || ||||| |||||||| | || Sbjct 85830 TTTAGGTATGCGTCCTTGGATCGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGC 85771 Query 180167 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCCCCTCGGCAT 180226 ||||||| || | ||||| ||||||||||||| |||||||| | ||||| | || || Sbjct 85770 TGTATTCATCATTTATCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 85711 Query 180227 TTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCTGATGCACCC 180286 ||||| || ||||||| |||| | || |||||||| |||||||||||||| |||||||| Sbjct 85710 CTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 85651 Query 180287 CTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGCAATGCACGG 180346 ||||| ||||| || || || ||||| || || |||||| | ||||| || |||||||| Sbjct 85650 ATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGG 85591 Query 180347 TTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAACTACGG 180406 |||||| || || ||||| | |||||||||| ||||||| || || ||| | || Sbjct 85590 TTCACTTGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCAGCTAACGAAGG 85531 Query 180407 TTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGGATACTTCGG 180466 |||||| || |||||||||||||| || |||||||||||||| || ||||| |||||||| Sbjct 85530 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCATGGCTACTTCGG 85471 Query 180467 TCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTGGC 180526 |||| | || ||||| ||||| || ||||||||||| |||||| | || |||||| | || Sbjct 85470 TCGTTTAATTTTCCAATATGCTTCTTTCAACAACTCTCGTTCATTACATTTCTTCTTAGC 85411 Query 180527 AGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAA 180586 || ||||| || ||||| || ||||||||||| | || | || ||||||||||| Sbjct 85410 TGCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTCAA 85351 Query 180587 CCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAACAC 180646 | | || ||||||||||||||||| || | | ||| ||||||||||| ||||||| Sbjct 85350 CTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACAC 85291 Query 180647 TTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGC 180706 |||||||||| | ||||||| || || ||||||||||| ||||| |||||||| || Sbjct 85290 TTGGGCAGACATTATCAACCGTGCCAACCTTGGTATGGAAGTAATGCATGAGCGTAACGC 85231 Query 180707 TCACAACTTCCCA 180719 ||||||||||||| Sbjct 85230 TCACAACTTCCCA 85218 Score = 416 bits (460), Expect = 3e-111 Identities = 514/703 (73%), Gaps = 0/703 (0%) Strand=Plus/Minus Query 181421 TGGTTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCT 181480 |||||||| | | |||||||||||| || ||||| || |||||| | || ||||| Sbjct 18095 TGGTTTGATGTAGTAGATGACTGGCTTCGTCGTGACCGTTTCGTCTTTCTAGGATGGTCA 18036 Query 181481 GGACTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACT 181540 || || | | || || || || || || ||| |||| || ||| | || || ||||| Sbjct 18035 GGGTTATTATTATTGCCTACAGCATACCTGGCACTTGGTGGTTGGTTTACAGGAACTACA 17976 Query 181541 TTTGTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTC 181600 ||||| ||||| ||||| || || || || || ||||| || | || || ||||||| Sbjct 17975 TTTGTAACGTCTTGGTATACTCATGGTTTAGCATCTTCATATTTAGAAGGATGTAATTTC 17916 Query 181601 CTTACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGG 181660 | ||||| ||||| ||||| || || | ||||||||||||| | | | |||||| Sbjct 17915 TTAACAGCAGCTGTTTCAACTCCAGCGAATAGTATGGGTCATTCTTTATTATTCCTTTGG 17856 Query 181661 GGTCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTT 181720 || || |||||||| ||||||||| || ||| |||||||| || || ||| | ||| Sbjct 17855 GGCCCAGAAGCTCAAGGCGATTTCACACGTTGGTGTCAACTTGGTGGTCTATGGACGTTT 17796 Query 181721 GTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCT 181780 || || || ||||| || || ||||| || ||||||||||| | || |||||| |||| Sbjct 17795 GTTGCTCTTCACGGTGCATTTGCTCTGATTGGTTTTATGCTTCGTCAGTTTGAAATTGCA 17736 Query 181781 CGTCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTC 181840 ||| | | || || || ||||| || ||||| ||||| | || ||| |||||||| Sbjct 17735 CGTTCAGTAAAGATTCGCCCTTACAACGCAATTGCATTTTCAGCACCAATTTCTGTATTC 17676 Query 181841 GTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTC 181900 || |||||||| | || || ||| | |||||||| ||||||||||||| || || || Sbjct 17675 GTTTCTGTATTCTTAATTTACCCTTTAGGACAATCTGGTTGGTTCTTTGCACCAAGCTTT 17616 Query 181901 GGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTC 181960 ||||| || || |||||||| ||| || | ||| |||| || || ||||| ||||| | Sbjct 17615 GGTGTTGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGACTTTA 17556 Query 181961 AATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATT 182020 || || ||||||||||||||||| || ||| | || || | || |||| | ||||||| Sbjct 17555 AACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGAGCTGCTCTACTTTGTGCAATT 17496 Query 182021 CACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAA 182080 || || | || || || ||||| || | | | || ||||| ||||| || ||| Sbjct 17495 CATGGCGCAACTGTAGAAAATACGCTTTTTGAGGATGGTGATGGTGCAAACACATTCCGT 17436 Query 182081 GCATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTA 182123 || || | ||||||||| |||||||| || |||||||||| Sbjct 17435 GCTTTTAACCCAACTCAAGCTGAAGAAACATACTCAATGGTTA 17393 Score = 416 bits (460), Expect = 3e-111 Identities = 514/703 (73%), Gaps = 0/703 (0%) Strand=Plus/Minus Query 181421 TGGTTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCT 181480 |||||||| | | |||||||||||| || ||||| || |||||| | || ||||| Sbjct 147540 TGGTTTGATGTAGTAGATGACTGGCTTCGTCGTGACCGTTTCGTCTTTCTAGGATGGTCA 147481 Query 181481 GGACTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACT 181540 || || | | || || || || || || ||| |||| || ||| | || || ||||| Sbjct 147480 GGGTTATTATTATTGCCTACAGCATACCTGGCACTTGGTGGTTGGTTTACAGGAACTACA 147421 Query 181541 TTTGTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTC 181600 ||||| ||||| ||||| || || || || || ||||| || | || || ||||||| Sbjct 147420 TTTGTAACGTCTTGGTATACTCATGGTTTAGCATCTTCATATTTAGAAGGATGTAATTTC 147361 Query 181601 CTTACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGG 181660 | ||||| ||||| ||||| || || | ||||||||||||| | | | |||||| Sbjct 147360 TTAACAGCAGCTGTTTCAACTCCAGCGAATAGTATGGGTCATTCTTTATTATTCCTTTGG 147301 Query 181661 GGTCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTT 181720 || || |||||||| ||||||||| || ||| |||||||| || || ||| | ||| Sbjct 147300 GGCCCAGAAGCTCAAGGCGATTTCACACGTTGGTGTCAACTTGGTGGTCTATGGACGTTT 147241 Query 181721 GTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCT 181780 || || || ||||| || || ||||| || ||||||||||| | || |||||| |||| Sbjct 147240 GTTGCTCTTCACGGTGCATTTGCTCTGATTGGTTTTATGCTTCGTCAGTTTGAAATTGCA 147181 Query 181781 CGTCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTC 181840 ||| | | || || || ||||| || ||||| ||||| | || ||| |||||||| Sbjct 147180 CGTTCAGTAAAGATTCGCCCTTACAACGCAATTGCATTTTCAGCACCAATTTCTGTATTC 147121 Query 181841 GTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTC 181900 || |||||||| | || || ||| | |||||||| ||||||||||||| || || || Sbjct 147120 GTTTCTGTATTCTTAATTTACCCTTTAGGACAATCTGGTTGGTTCTTTGCACCAAGCTTT 147061 Query 181901 GGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTC 181960 ||||| || || |||||||| ||| || | ||| |||| || || ||||| ||||| | Sbjct 147060 GGTGTTGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGACTTTA 147001 Query 181961 AATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATT 182020 || || ||||||||||||||||| || ||| | || || | || |||| | ||||||| Sbjct 147000 AACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGAGCTGCTCTACTTTGTGCAATT 146941 Query 182021 CACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAA 182080 || || | || || || ||||| || | | | || ||||| ||||| || ||| Sbjct 146940 CATGGCGCAACTGTAGAAAATACGCTTTTTGAGGATGGTGATGGTGCAAACACATTCCGT 146881 Query 182081 GCATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTA 182123 || || | ||||||||| |||||||| || |||||||||| Sbjct 146880 GCTTTTAACCCAACTCAAGCTGAAGAAACATACTCAATGGTTA 146838 Score = 174 bits (192), Expect = 2e-38 Identities = 227/314 (72%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 182123 ACAGCGAACCGCTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTG 182182 || || || || |||||||| || || || ||| | || ||| ||||| | ||||| Sbjct 16348 ACTGCAAATCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAATAAACGTTGGTTA 16289 Query 182183 CATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATT 182242 || ||||||||| | |||||||| || | |||||||||| ||| | || ||| | | Sbjct 16288 CACTTCTTTATGTTATTTGTTCCGGTAACTGGTCTTTGGATGAGTGCAATTGGTGTAGTA 16229 Query 182243 GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAA 182302 ||| | ||| | ||| | ||||| ||||| || || || |||||||| | || | ||| Sbjct 16228 GGTTTAGCTTTAAACTTACGTGCGTATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAA 16169 Query 182303 GACCCAGAGTTCGAGACGTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCA 182362 || || || || || || ||||| ||||| || ||||| || || |||||| | ||||| Sbjct 16168 GATCCTGAATTTGAAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 16109 Query 182363 TGGTTAGCACCAGTCGATCAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCC 182422 ||| | || | ||||| || ||||| || |||| ||||||||||| || ||||| Sbjct 16108 TGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCA 16049 Query 182423 AGAGGTAACGCACT 182436 | || ||||| || Sbjct 16048 CGTGGAAACGCTCT 16035 Score = 174 bits (192), Expect = 2e-38 Identities = 227/314 (72%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 182123 ACAGCGAACCGCTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTG 182182 || || || || |||||||| || || || ||| | || ||| ||||| | ||||| Sbjct 145793 ACTGCAAATCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAATAAACGTTGGTTA 145734 Query 182183 CATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATT 182242 || ||||||||| | |||||||| || | |||||||||| ||| | || ||| | | Sbjct 145733 CACTTCTTTATGTTATTTGTTCCGGTAACTGGTCTTTGGATGAGTGCAATTGGTGTAGTA 145674 Query 182243 GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAA 182302 ||| | ||| | ||| | ||||| ||||| || || || |||||||| | || | ||| Sbjct 145673 GGTTTAGCTTTAAACTTACGTGCGTATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAA 145614 Query 182303 GACCCAGAGTTCGAGACGTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCA 182362 || || || || || || ||||| ||||| || ||||| || || |||||| | ||||| Sbjct 145613 GATCCTGAATTTGAAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 145554 Query 182363 TGGTTAGCACCAGTCGATCAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCC 182422 ||| | || | ||||| || ||||| || |||| ||||||||||| || ||||| Sbjct 145553 TGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCA 145494 Query 182423 AGAGGTAACGCACT 182436 | || ||||| || Sbjct 145493 CGTGGAAACGCTCT 145480 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 141255 TCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAATC 141314 |||||||||||||||||| ||||| || ||||||| || ||||||||||||||| || Sbjct 75158 TCCTCAGTAGCTCAGCGGTAGAGCGCTCGGCTGTTAACCGATTGGTCGTAGGTTCAAGTC 75099 Query 141315 CTACCTGGGGAG 141326 |||||||||||| Sbjct 75098 CTACCTGGGGAG 75087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610394503382040