Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micractinium_20conductrix_20[genbank_20GCA_5F002245815.1_202017-08- 10] 301 sequences; 61,020,757 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq52 664 0.0 >seq52 Length=149364 Score = 664 bits (736), Expect = 0.0 Identities = 737/983 (75%), Gaps = 0/983 (0%) Strand=Plus/Minus Query 169402 TTTTGCGAGTGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTA 169461 ||||| ||||||||||| || | ||| | | || | |||||||||||||| || Sbjct 86189 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGTTA 86130 Query 169462 ATGATTCCATGCTTACTCACAGCAGCAGCATGTTTCATCGTTGCATTCATTGCAGCACCT 169521 ||||| || ||| | ||||| | || || ||| | ||||| || ||||| || Sbjct 86129 ATGATCCCTACTTTATTAACAGCTACTTCAGTATTTATCATCGCATTTATCGCAGCTCCG 86070 Query 169522 CCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTCTTTCTTGTATGGTAACAAC 169581 |||||||||||||| || ||| | || || || | ||||| || | ||||| ||||| Sbjct 86069 CCTGTCGATATCGATGGTATCCGTGAGCCTGTTTCAGGTTCATTACTATATGGAAACAAT 86010 Query 169582 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGACTACACTTCTACCCAATC 169641 |||||| ||||||| || ||||| | || ||||||||||| |||||||||||||||| Sbjct 86009 ATCATCACTGGTGCTATTATTCCAACTTCTAACGCTATCGGTTTACACTTCTACCCAATT 85950 Query 169642 TGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGTCCTTATCAGTTGGTAATC 169701 ||||||||||| || ||||||| ||||| || |||||||||||||| || | | | Sbjct 85949 TGGGAAGCAGCTTCTCTTGATGAGTGGTTATACAATGGTGGTCCTTACCAACTTATCGTT 85890 Query 169702 TTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGA 169761 | ||| ||| | | || | | |||||||||| | |||||||| |||| | | Sbjct 85889 TGCCATTTCTTCTTAGGCGTTTGTTCATACATGGGTCGTGAGTGGGAATTATCTTTTCGT 85830 Query 169762 TTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCGCT 169821 ||||| ||||||||||||||| ||||| ||||| |||||||| |||| || ||| Sbjct 85829 TTAGGTATGCGTCCTTGGATCGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGCT 85770 Query 169822 GTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 169881 |||||| | | || ||| | ||||| ||||| ||||||||||||||||| |||||||| Sbjct 85769 GTATTCATCATTTATCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATC 85710 Query 169882 TCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCT 169941 || |||||||||||||| ||| |||| |||||||| ||||| ||||| || ||||| || Sbjct 85709 TCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCA 85650 Query 169942 TTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTTATTCTCAGCAATGCATGGT 170001 ||||| ||| || || || || | || || || || |||||||| || ||||| ||| Sbjct 85649 TTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGT 85590 Query 170002 TCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCAAGAGTCACAGAACTATGGT 170061 |||||||| ||||| ||| |||| | |||||||| || | || ||| ||| | ||| Sbjct 85589 TCACTTGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCAGCTAACGAAGGT 85530 Query 170062 TATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGT 170121 || || ||||| |||||||||||||| |||||||| || ||||| || || ||||| ||| Sbjct 85529 TACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCATGGCTACTTCGGT 85470 Query 170122 CGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTCTACACTTCTTCCTAGCA 170181 ||| | || ||||| |||||||| ||||||||||| | |||| |||||| |||| Sbjct 85469 CGTTTAATTTTCCAATATGCTTCTTTCAACAACTCTCGTTCATTACATTTCTTCTTAGCT 85410 Query 170182 GTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAAC 170241 | || || ||||| || | ||||| || || | ||||| | || |||||||||||| Sbjct 85409 GCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTCAAC 85350 Query 170242 TTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCTAACGGAAAAATCGTCCCAACA 170301 || |||||||||||||| |||||||||||||| ||| | | || | || || Sbjct 85349 TTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACACT 85290 Query 170302 TGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTTATGCATGAAAGAAATGCA 170361 |||| || || | ||| | || ||| | ||||||||||| |||||||| | || || Sbjct 85289 TGGGCAGACATTATCAACCGTGCCAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCT 85230 Query 170362 CACAACTTCCCACTAGACCTAGC 170384 |||||||||||| |||| |||| Sbjct 85229 CACAACTTCCCATTAGATTTAGC 85207 Score = 279 bits (308), Expect = 6e-70 Identities = 432/617 (70%), Gaps = 0/617 (0%) Strand=Plus/Minus Query 170523 GGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGG 170582 |||||||||||||| | || |||||| | | || ||||| || || |||||||| Sbjct 18098 GGTTGGTTTGATGTAGTAGATGACTGGCTTCGTCGTGACCGTTTCGTCTTTCTAGGATGG 18039 Query 170583 TCTGGTCTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACT 170642 || || | ||| | ||||| |||||||| || | ||||||||||| ||| ||| Sbjct 18038 TCAGGGTTATTATTATTGCCTACAGCATACCTGGCACTTGGTGGTTGGTTTACAGGAACT 17979 Query 170643 ACCTTCGTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAAC 170702 || || || || || |||||||| |||||| | || || |||||| | || |||||||| Sbjct 17978 ACATTTGTAACGTCTTGGTATACTCATGGTTTAGCATCTTCATATTTAGAAGGATGTAAT 17919 Query 170703 TTCCTAACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTT 170762 ||| |||||||||| ||||| || || | | ||||||||| | | | |||||| Sbjct 17918 TTCTTAACAGCAGCTGTTTCAACTCCAGCGAATAGTATGGGTCATTCTTTATTATTCCTT 17859 Query 170763 TGGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAAC 170822 ||||| || ||||| ||||| || ||||||| ||||| || ||| |||||| Sbjct 17858 TGGGGCCCAGAAGCTCAAGGCGATTTCACACGTTGGTGTCAACTTGGTGGTCTATGGACG 17799 Query 170823 TTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATC 170882 ||||| || | || || | |||| || || ||||| ||||| | || ||||| || Sbjct 17798 TTTGTTGCTCTTCACGGTGCATTTGCTCTGATTGGTTTTATGCTTCGTCAGTTTGAAATT 17739 Query 170883 GCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTC 170942 ||| | ||| || | |||||||||||| | ||||| || || || | || Sbjct 17738 GCACGTTCAGTAAAGATTCGCCCTTACAACGCAATTGCATTTTCAGCACCAATTTCTGTA 17679 Query 170943 TTCACTAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCA 171002 ||| | | || | || || || |||| || |||||||||| |||||| Sbjct 17678 TTCGTTTCTGTATTCTTAATTTACCCTTTAGGACAATCTGGTTGGTTCTTTGCACCAAGC 17619 Query 171003 TTCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACA 171062 || ||||| || |||||||| || | || |||||| | ||||||||||| ||| || Sbjct 17618 TTTGGTGTTGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGACT 17559 Query 171063 TTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCC 171122 || || || || || ||||||||||| || || |||| || | || || | ||||| Sbjct 17558 TTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGAGCTGCTCTACTTTGTGCA 17499 Query 171123 ATTCATGGTGCAACAGT 171139 |||||||| ||||| || Sbjct 17498 ATTCATGGCGCAACTGT 17482 Score = 279 bits (308), Expect = 6e-70 Identities = 432/617 (70%), Gaps = 0/617 (0%) Strand=Plus/Minus Query 170523 GGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGG 170582 |||||||||||||| | || |||||| | | || ||||| || || |||||||| Sbjct 147543 GGTTGGTTTGATGTAGTAGATGACTGGCTTCGTCGTGACCGTTTCGTCTTTCTAGGATGG 147484 Query 170583 TCTGGTCTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACT 170642 || || | ||| | ||||| |||||||| || | ||||||||||| ||| ||| Sbjct 147483 TCAGGGTTATTATTATTGCCTACAGCATACCTGGCACTTGGTGGTTGGTTTACAGGAACT 147424 Query 170643 ACCTTCGTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAAC 170702 || || || || || |||||||| |||||| | || || |||||| | || |||||||| Sbjct 147423 ACATTTGTAACGTCTTGGTATACTCATGGTTTAGCATCTTCATATTTAGAAGGATGTAAT 147364 Query 170703 TTCCTAACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTT 170762 ||| |||||||||| ||||| || || | | ||||||||| | | | |||||| Sbjct 147363 TTCTTAACAGCAGCTGTTTCAACTCCAGCGAATAGTATGGGTCATTCTTTATTATTCCTT 147304 Query 170763 TGGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAAC 170822 ||||| || ||||| ||||| || ||||||| ||||| || ||| |||||| Sbjct 147303 TGGGGCCCAGAAGCTCAAGGCGATTTCACACGTTGGTGTCAACTTGGTGGTCTATGGACG 147244 Query 170823 TTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATC 170882 ||||| || | || || | |||| || || ||||| ||||| | || ||||| || Sbjct 147243 TTTGTTGCTCTTCACGGTGCATTTGCTCTGATTGGTTTTATGCTTCGTCAGTTTGAAATT 147184 Query 170883 GCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTC 170942 ||| | ||| || | |||||||||||| | ||||| || || || | || Sbjct 147183 GCACGTTCAGTAAAGATTCGCCCTTACAACGCAATTGCATTTTCAGCACCAATTTCTGTA 147124 Query 170943 TTCACTAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCA 171002 ||| | | || | || || || |||| || |||||||||| |||||| Sbjct 147123 TTCGTTTCTGTATTCTTAATTTACCCTTTAGGACAATCTGGTTGGTTCTTTGCACCAAGC 147064 Query 171003 TTCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACA 171062 || ||||| || |||||||| || | || |||||| | ||||||||||| ||| || Sbjct 147063 TTTGGTGTTGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGACT 147004 Query 171063 TTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCC 171122 || || || || || ||||||||||| || || |||| || | || || | ||||| Sbjct 147003 TTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGAGCTGCTCTACTTTGTGCA 146944 Query 171123 ATTCATGGTGCAACAGT 171139 |||||||| ||||| || Sbjct 146943 ATTCATGGCGCAACTGT 146927 Score = 165 bits (182), Expect = 9e-36 Identities = 232/325 (71%), Gaps = 2/325 (1%) Strand=Plus/Minus Query 171242 TATGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAG 171301 ||||| || ||||| | ||||||||||| || |||||| | ||||| || || ||| | Sbjct 16353 TATGA--ACTGCAAATCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAATAAACG 16296 Query 171302 ATTTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGG 171361 | ||||||||| ||||||| || ||||| || | ||| | |||| | || || Sbjct 16295 TTGGTTACACTTCTTTATGTTATTTGTTCCGGTAACTGGTCTTTGGATGAGTGCAATTGG 16236 Query 171362 TATCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGC 171421 | | |||||| |||| | ||| | | || || ||||| || || ||||| || | || Sbjct 16235 TGTAGTAGGTTTAGCTTTAAACTTACGTGCGTATGATTTCGTTTCACAAGAAATTCGCGC 16176 Query 171422 AGCAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTAT 171481 || ||||| || || || || |||||||| || || ||||| ||| | || |||||||| Sbjct 16175 TGCGGAAGATCCTGAATTTGAAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTAT 16116 Query 171482 GAGAGCATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGT 171541 | || |||||| | | || || || ||||| || | |||||||| || || || Sbjct 16115 TCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGT 16056 Query 171542 GTTACCAAGAGGTAACGCACTTTAA 171566 |||||| | || ||||| |||||| Sbjct 16055 TTTACCACGTGGAAACGCTCTTTAA 16031 Score = 165 bits (182), Expect = 9e-36 Identities = 232/325 (71%), Gaps = 2/325 (1%) Strand=Plus/Minus Query 171242 TATGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAG 171301 ||||| || ||||| | ||||||||||| || |||||| | ||||| || || ||| | Sbjct 145798 TATGA--ACTGCAAATCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAATAAACG 145741 Query 171302 ATTTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGG 171361 | ||||||||| ||||||| || ||||| || | ||| | |||| | || || Sbjct 145740 TTGGTTACACTTCTTTATGTTATTTGTTCCGGTAACTGGTCTTTGGATGAGTGCAATTGG 145681 Query 171362 TATCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGC 171421 | | |||||| |||| | ||| | | || || ||||| || || ||||| || | || Sbjct 145680 TGTAGTAGGTTTAGCTTTAAACTTACGTGCGTATGATTTCGTTTCACAAGAAATTCGCGC 145621 Query 171422 AGCAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTAT 171481 || ||||| || || || || |||||||| || || ||||| ||| | || |||||||| Sbjct 145620 TGCGGAAGATCCTGAATTTGAAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTAT 145561 Query 171482 GAGAGCATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGT 171541 | || |||||| | | || || || ||||| || | |||||||| || || || Sbjct 145560 TCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGT 145501 Query 171542 GTTACCAAGAGGTAACGCACTTTAA 171566 |||||| | || ||||| |||||| Sbjct 145500 TTTACCACGTGGAAACGCTCTTTAA 145476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579210620711840