Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micractinium_20conductrix_20[genbank_20GCA_5F002245815.1_202017-08- 10] 301 sequences; 61,020,757 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq52 758 0.0 >seq52 Length=149364 Score = 758 bits (840), Expect = 0.0 Identities = 766/994 (77%), Gaps = 2/994 (0%) Strand=Plus/Minus Query 167862 TTTCTGCGAGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 167921 ||| || ||||||||||| ||| | ||||| | || |||||||||| || || | Sbjct 86190 TTTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGTT 86131 Query 167922 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 167980 ||||| || ||| | || |||| ||| || || || ||| |||| || |||| |||| Sbjct 86130 AATGATCCCTACTTTATTAACAGCTACT-TCAGTATTTATCATCGCATTTATCGCAGCTC 86072 Query 167981 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 168040 | ||||| || ||||| || |||||||| || || | |||||| | | ||||| |||| Sbjct 86071 CGCCTGTCGATATCGATGGTATCCGTGAGCCTGTTTCAGGTTCATTACTATATGGAAACA 86012 Query 168041 ACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCA 168100 | |||||| ||||||| || | || ||||||| ||||| || | |||||||| || | Sbjct 86011 ATATCATCACTGGTGCTATTATTCCAACTTCTAACGCTATCGGTTTACACTTCTACCCAA 85952 Query 168101 TCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAG 168160 | ||||||||||| || || ||||||||||| || || |||||||||| |||||| | | Sbjct 85951 TTTGGGAAGCAGCTTCTCTTGATGAGTGGTTATACAATGGTGGTCCTTACCAACTTATCG 85892 Query 168161 TCTTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGAATGGGAACTTTCATATC 168220 | | || ||| || | || | | | |||||||||| ||||| |||||| | || | || Sbjct 85891 TTTGCCATTTCTTCTTAGGCGTTTGTTCATACATGGGTCGTGAGTGGGAATTATCTTTTC 85832 Query 168221 GTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTG 168280 |||||||||||||||| |||||| ||||| ||||| |||||||| |||||||| | | Sbjct 85831 GTTTAGGTATGCGTCCTTGGATCGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAG 85772 Query 168281 CAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAA 168340 | |||||| | | ||||| ||||||||||| ||||||||||| ||||| | || | Sbjct 85771 CTGTATTCATCATTTATCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTA 85712 Query 168341 TCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATC 168400 |||| || || ||||||| |||| | || ||||||||||||||||| || || ||||| | Sbjct 85711 TCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACC 85652 Query 168401 CCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACG 168460 | ||||||||||| || |||||||| ||||||||||| || || ||||||||||| Sbjct 85651 CATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACG 85592 Query 168461 GAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACG 168520 | | || ||||||||| | || | || || ||||||| |||||| ||| | | Sbjct 85591 GTTCACTTGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCAGCTAACGAAG 85532 Query 168521 GTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCG 168580 ||||||| ||||| |||||||||||||| ||||||||||| || |||||||| ||||||| Sbjct 85531 GTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCATGGCTACTTCG 85472 Query 168581 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTG 168640 ||||||| || |||||||| ||||| ||||||||||| || || || || |||||| | | Sbjct 85471 GTCGTTTAATTTTCCAATATGCTTCTTTCAACAACTCTCGTTCATTACATTTCTTCTTAG 85412 Query 168641 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCA 168700 |||| ||||| ||||| || || |||||||| || | || | || || |||||||||| Sbjct 85411 CTGCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTCA 85352 Query 168701 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 168760 || | || ||||||||||||||||| || | | ||| || |||||||| | |||| Sbjct 85351 ACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACA 85292 Query 168761 CCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACG 168820 | |||||||| || | ||||| || || ||||||||||| |||||||||||||||| Sbjct 85291 CTTGGGCAGACATTATCAACCGTGCCAACCTTGGTATGGAAGTAATGCATGAGCGTAACG 85232 Query 168821 CACACAACTTCCCACTCGATCTTGCTGCTGCTGA 168854 | |||||||||||| | ||| | |||| || ||| Sbjct 85231 CTCACAACTTCCCATTAGATTTAGCTGTTGTTGA 85198 Score = 309 bits (342), Expect = 3e-79 Identities = 493/705 (70%), Gaps = 2/705 (0%) Strand=Plus/Minus Query 169301 GGGTGGTTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGG 169360 || ||||| ||||| | ||||||||||| || ||||| || || || | || ||| Sbjct 18098 GGTTGGTTTGATGTAGTAGATGACTGGCTTCGTCGTGACCGTTTCGTCTTTCTAGGATGG 18039 Query 169361 TCTGGTCTACTTCTTCTTCCC-ACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTAC 169419 || || || || || || || || || || || || |||| || ||| | || || || Sbjct 18038 TCAGGGTTA-TTATTATTGCCTACAGCATACCTGGCACTTGGTGGTTGGTTTACAGGAAC 17980 Query 169420 AGCGTTTGTTACTTCCTGGTACACCCACGGACTCGCTTCCAGTTACTTAGAAGGCGCTAA 169479 | ||||| || || ||||| || || || | || || || |||||||| ||| Sbjct 17979 TACATTTGTAACGTCTTGGTATACTCATGGTTTAGCATCTTCATATTTAGAAGGATGTAA 17920 Query 169480 CTTCCTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCT 169539 ||| | || || ||||| || || || | |||||| || || | | || || Sbjct 17919 TTTCTTAACAGCAGCTGTTTCAACTCCAGCGAATAGTATGGGTCATTCTTTATTATTCCT 17860 Query 169540 ATGGGGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAA 169599 ||||| |||||||| |||||||||||| || ||||||||| | |||||||| |||| Sbjct 17859 TTGGGGCCCAGAAGCTCAAGGCGATTTCACACGTTGGTGTCAACTTGGTGGTCTATGGAC 17800 Query 169600 CTTTGTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATT 169659 ||||| || ||||| ||||||||||| |||||||||| |||||| | ||||||||| | Sbjct 17799 GTTTGTTGCTCTTCACGGTGCATTTGCTCTGATTGGTTTTATGCTTCGTCAGTTTGAAAT 17740 Query 169660 GGCACGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGT 169719 |||||| | || || ||||| || || |||||||| || | || ||| |||| Sbjct 17739 TGCACGTTCAGTAAAGATTCGCCCTTACAACGCAATTGCATTTTCAGCACCAATTTCTGT 17680 Query 169720 ATTTGTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTC 169779 ||| || ||| || | || ||||| | ||||| || ||||||||||| || Sbjct 17679 ATTCGTTTCTGTATTCTTAATTTACCCTTTAGGACAATCTGGTTGGTTCTTTGCACCAAG 17620 Query 169780 CTTTGGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGAC 169839 |||||| || | ||||| ||| | ||| | || ||| | ||||| ||||| |||||||| Sbjct 17619 CTTTGGTGTTGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGAC 17560 Query 169840 GTTGAATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGC 169899 || || || ||||| |||||||||||||| || | | || | || | |||| ||| Sbjct 17559 TTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGAGCTGCTCTACTTTGTGC 17500 Query 169900 TATCCATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTT 169959 || ||||| | || ||||| || || | | ||| || ||||| ||||| || || Sbjct 17499 AATTCATGGCGCAACTGTAGAAAATACGCTTTTTGAGGATGGTGATGGTGCAAACACATT 17440 Query 169960 CAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGT 170004 | || ||| | | || || | ||||| || || || ||||| Sbjct 17439 CCGTGCTTTTAACCCAACTCAAGCTGAAGAAACATACTCAATGGT 17395 Score = 309 bits (342), Expect = 3e-79 Identities = 493/705 (70%), Gaps = 2/705 (0%) Strand=Plus/Minus Query 169301 GGGTGGTTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGG 169360 || ||||| ||||| | ||||||||||| || ||||| || || || | || ||| Sbjct 147543 GGTTGGTTTGATGTAGTAGATGACTGGCTTCGTCGTGACCGTTTCGTCTTTCTAGGATGG 147484 Query 169361 TCTGGTCTACTTCTTCTTCCC-ACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTAC 169419 || || || || || || || || || || || || |||| || ||| | || || || Sbjct 147483 TCAGGGTTA-TTATTATTGCCTACAGCATACCTGGCACTTGGTGGTTGGTTTACAGGAAC 147425 Query 169420 AGCGTTTGTTACTTCCTGGTACACCCACGGACTCGCTTCCAGTTACTTAGAAGGCGCTAA 169479 | ||||| || || ||||| || || || | || || || |||||||| ||| Sbjct 147424 TACATTTGTAACGTCTTGGTATACTCATGGTTTAGCATCTTCATATTTAGAAGGATGTAA 147365 Query 169480 CTTCCTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCT 169539 ||| | || || ||||| || || || | |||||| || || | | || || Sbjct 147364 TTTCTTAACAGCAGCTGTTTCAACTCCAGCGAATAGTATGGGTCATTCTTTATTATTCCT 147305 Query 169540 ATGGGGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAA 169599 ||||| |||||||| |||||||||||| || ||||||||| | |||||||| |||| Sbjct 147304 TTGGGGCCCAGAAGCTCAAGGCGATTTCACACGTTGGTGTCAACTTGGTGGTCTATGGAC 147245 Query 169600 CTTTGTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATT 169659 ||||| || ||||| ||||||||||| |||||||||| |||||| | ||||||||| | Sbjct 147244 GTTTGTTGCTCTTCACGGTGCATTTGCTCTGATTGGTTTTATGCTTCGTCAGTTTGAAAT 147185 Query 169660 GGCACGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGT 169719 |||||| | || || ||||| || || |||||||| || | || ||| |||| Sbjct 147184 TGCACGTTCAGTAAAGATTCGCCCTTACAACGCAATTGCATTTTCAGCACCAATTTCTGT 147125 Query 169720 ATTTGTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTC 169779 ||| || ||| || | || ||||| | ||||| || ||||||||||| || Sbjct 147124 ATTCGTTTCTGTATTCTTAATTTACCCTTTAGGACAATCTGGTTGGTTCTTTGCACCAAG 147065 Query 169780 CTTTGGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGAC 169839 |||||| || | ||||| ||| | ||| | || ||| | ||||| ||||| |||||||| Sbjct 147064 CTTTGGTGTTGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGAC 147005 Query 169840 GTTGAATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGC 169899 || || || ||||| |||||||||||||| || | | || | || | |||| ||| Sbjct 147004 TTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGAGCTGCTCTACTTTGTGC 146945 Query 169900 TATCCATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTT 169959 || ||||| | || ||||| || || | | ||| || ||||| ||||| || || Sbjct 146944 AATTCATGGCGCAACTGTAGAAAATACGCTTTTTGAGGATGGTGATGGTGCAAACACATT 146885 Query 169960 CAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGT 170004 | || ||| | | || || | ||||| || || || ||||| Sbjct 146884 CCGTGCTTTTAACCCAACTCAAGCTGAAGAAACATACTCAATGGT 146840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574471438543080