Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micractinium_20conductrix_20[genbank_20GCA_5F002245815.1_202017-08- 10] 301 sequences; 61,020,757 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq52 636 2e-177 >seq52 Length=149364 Score = 636 bits (704), Expect = 2e-177 Identities = 727/977 (74%), Gaps = 0/977 (0%) Strand=Plus/Minus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 || || || |||||||| ||| | ||| | | || | |||||||| ||||| | Sbjct 86189 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGTTA 86130 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| ||| | ||||| | || || ||| | ||||| || ||||| || Sbjct 86129 ATGATCCCTACTTTATTAACAGCTACTTCAGTATTTATCATCGCATTTATCGCAGCTCCG 86070 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 |||||||||||||| || ||| | || || ||| | ||||| || ||||||| ||||| Sbjct 86069 CCTGTCGATATCGATGGTATCCGTGAGCCTGTTTCAGGTTCATTACTATATGGAAACAAT 86010 Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATC 172059 |||||| ||||||| || ||||| | || ||||| || ||| | ||||||||||| || Sbjct 86009 ATCATCACTGGTGCTATTATTCCAACTTCTAACGCTATCGGTTTACACTTCTACCCAATT 85950 Query 172060 TGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATC 172119 ||||||||||| | | ||||| ||||| ||||||||||||||||| || | | | Sbjct 85949 TGGGAAGCAGCTTCTCTTGATGAGTGGTTATACAATGGTGGTCCTTACCAACTTATCGTT 85890 Query 172120 TTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGA 172179 | ||| ||| | | || | | |||||||||| | |||||||| |||| | | Sbjct 85889 TGCCATTTCTTCTTAGGCGTTTGTTCATACATGGGTCGTGAGTGGGAATTATCTTTTCGT 85830 Query 172180 TTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCT 172239 ||||||||| | || ||||| || || || |||||||| || | ||||| ||| Sbjct 85829 TTAGGTATGCGTCCTTGGATCGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGCT 85770 Query 172240 GTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 172299 || ||| | | |||||| ||||||| ||||| ||||||||||||||||| |||||||| Sbjct 85769 GTATTCATCATTTATCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATC 85710 Query 172300 TCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCT 172359 || ||||| |||||||| ||| |||| |||||||| ||||| ||||| || ||||| || Sbjct 85709 TCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCA 85650 Query 172360 TTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGT 172419 ||||| ||| || || || || | ||||| || || |||||||| || ||||||||| Sbjct 85649 TTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGT 85590 Query 172420 TCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGGA 172479 || | || || |||||| |||| | || ||||||||| |||||| ||| | || Sbjct 85589 TCACTTGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCAGCTAACGAAGGT 85530 Query 172480 TACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGT 172539 ||||| ||||| |||||||||||||| |||||||| || ||||| || || ||||| ||| Sbjct 85529 TACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCATGGCTACTTCGGT 85470 Query 172540 CGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCA 172599 ||| | || ||||| |||||||||||||||||||| | | || |||||| |||| Sbjct 85469 CGTTTAATTTTCCAATATGCTTCTTTCAACAACTCTCGTTCATTACATTTCTTCTTAGCT 85410 Query 172600 GTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 172659 | || || ||||| || | ||||| || || | ||||| | || |||||||||||| Sbjct 85409 GCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTCAAC 85350 Query 172660 CTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTACA 172719 | || |||||||||||||||||||||||||||||| | | ||| | | || Sbjct 85349 TTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACACT 85290 Query 172720 TGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCA 172779 |||| ||| || | ||| | || ||||| ||||||||||| |||||||| | || || Sbjct 85289 TGGGCAGACATTATCAACCGTGCCAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCT 85230 Query 172780 CACAACTTCCCATTAGA 172796 ||||||||||||||||| Sbjct 85229 CACAACTTCCCATTAGA 85213 Score = 300 bits (332), Expect = 2e-76 Identities = 438/619 (71%), Gaps = 0/619 (0%) Strand=Plus/Minus Query 172943 GAGGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGAT 173002 |||||||||||||||| | || |||||| | | || |||||||| || | |||| Sbjct 18100 GAGGTTGGTTTGATGTAGTAGATGACTGGCTTCGTCGTGACCGTTTCGTCTTTCTAGGAT 18041 Query 173003 GGTCTGGTCTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAA 173062 |||| || | ||| | | ||| || ||||| | | ||||||||||| ||||| Sbjct 18040 GGTCAGGGTTATTATTATTGCCTACAGCATACCTGGCACTTGGTGGTTGGTTTACAGGAA 17981 Query 173063 CTACCTTCGTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAA 173122 |||| || || || || |||||||| |||||| | |||||||||||| | |||||| | Sbjct 17980 CTACATTTGTAACGTCTTGGTATACTCATGGTTTAGCATCTTCATATTTAGAAGGATGTA 17921 Query 173123 ACTTTTTAACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCC 173182 | || ||||||||||| || || || || | | ||||||||| | | | |||| Sbjct 17920 ATTTCTTAACAGCAGCTGTTTCAACTCCAGCGAATAGTATGGGTCATTCTTTATTATTCC 17861 Query 173183 TTTGGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGA 173242 ||||||| || ||||| ||||| ||| |||||||| ||||| || || ||||||| Sbjct 17860 TTTGGGGCCCAGAAGCTCAAGGCGATTTCACACGTTGGTGTCAACTTGGTGGTCTATGGA 17801 Query 173243 ACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGA 173302 ||||| || | || || | |||| || || ||||| ||||| ||||||||||| | Sbjct 17800 CGTTTGTTGCTCTTCACGGTGCATTTGCTCTGATTGGTTTTATGCTTCGTCAGTTTGAAA 17741 Query 173303 TCGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAG 173362 | ||| | ||| || | |||||||||||| | ||||| || || || | | Sbjct 17740 TTGCACGTTCAGTAAAGATTCGCCCTTACAACGCAATTGCATTTTCAGCACCAATTTCTG 17681 Query 173363 TCTTCACTAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTT 173422 | ||| | | || ||||| ||||| |||| || |||||||||| ||||| Sbjct 17680 TATTCGTTTCTGTATTCTTAATTTACCCTTTAGGACAATCTGGTTGGTTCTTTGCACCAA 17621 Query 173423 CATTCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTA 173482 || ||||| || ||||| || || | || |||||| | ||||||||||| ||| | Sbjct 17620 GCTTTGGTGTTGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGA 17561 Query 173483 CATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTG 173542 | || || || || || ||||||||||| || || |||| || | || |||| |||| Sbjct 17560 CTTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGAGCTGCTCTACTTTGTG 17501 Query 173543 CCATTCATGGTGCAACAGT 173561 | |||||||| ||||| || Sbjct 17500 CAATTCATGGCGCAACTGT 17482 Score = 300 bits (332), Expect = 2e-76 Identities = 438/619 (71%), Gaps = 0/619 (0%) Strand=Plus/Minus Query 172943 GAGGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGAT 173002 |||||||||||||||| | || |||||| | | || |||||||| || | |||| Sbjct 147545 GAGGTTGGTTTGATGTAGTAGATGACTGGCTTCGTCGTGACCGTTTCGTCTTTCTAGGAT 147486 Query 173003 GGTCTGGTCTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAA 173062 |||| || | ||| | | ||| || ||||| | | ||||||||||| ||||| Sbjct 147485 GGTCAGGGTTATTATTATTGCCTACAGCATACCTGGCACTTGGTGGTTGGTTTACAGGAA 147426 Query 173063 CTACCTTCGTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAA 173122 |||| || || || || |||||||| |||||| | |||||||||||| | |||||| | Sbjct 147425 CTACATTTGTAACGTCTTGGTATACTCATGGTTTAGCATCTTCATATTTAGAAGGATGTA 147366 Query 173123 ACTTTTTAACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCC 173182 | || ||||||||||| || || || || | | ||||||||| | | | |||| Sbjct 147365 ATTTCTTAACAGCAGCTGTTTCAACTCCAGCGAATAGTATGGGTCATTCTTTATTATTCC 147306 Query 173183 TTTGGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGA 173242 ||||||| || ||||| ||||| ||| |||||||| ||||| || || ||||||| Sbjct 147305 TTTGGGGCCCAGAAGCTCAAGGCGATTTCACACGTTGGTGTCAACTTGGTGGTCTATGGA 147246 Query 173243 ACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGA 173302 ||||| || | || || | |||| || || ||||| ||||| ||||||||||| | Sbjct 147245 CGTTTGTTGCTCTTCACGGTGCATTTGCTCTGATTGGTTTTATGCTTCGTCAGTTTGAAA 147186 Query 173303 TCGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAG 173362 | ||| | ||| || | |||||||||||| | ||||| || || || | | Sbjct 147185 TTGCACGTTCAGTAAAGATTCGCCCTTACAACGCAATTGCATTTTCAGCACCAATTTCTG 147126 Query 173363 TCTTCACTAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTT 173422 | ||| | | || ||||| ||||| |||| || |||||||||| ||||| Sbjct 147125 TATTCGTTTCTGTATTCTTAATTTACCCTTTAGGACAATCTGGTTGGTTCTTTGCACCAA 147066 Query 173423 CATTCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTA 173482 || ||||| || ||||| || || | || |||||| | ||||||||||| ||| | Sbjct 147065 GCTTTGGTGTTGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGA 147006 Query 173483 CATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTG 173542 | || || || || || ||||||||||| || || |||| || | || |||| |||| Sbjct 147005 CTTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGAGCTGCTCTACTTTGTG 146946 Query 173543 CCATTCATGGTGCAACAGT 173561 | |||||||| ||||| || Sbjct 146945 CAATTCATGGCGCAACTGT 146927 Score = 163 bits (180), Expect = 3e-35 Identities = 222/307 (72%), Gaps = 2/307 (1%) Strand=Plus/Minus Query 173683 TTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTTACACTTCCTCATG 173742 ||||||||||| || |||||| | || |||||||| ||| | | ||||||||| | ||| Sbjct 16336 TTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAATAAACGTTGGTTACACTTCTTTATG 16277 Query 173743 TTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGTAGGTCTTGCACTT 173802 || || || || || | ||| | |||| | || ||| | |||||| | || || Sbjct 16276 TTATTTGTTCCGGTAACTGGTCTTTGGATGAGTGCAATTGGTGTAGTAGGTTTAGC-TTT 16218 Query 173803 AACCTTA-GAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGATCCAGAGTT 173861 || |||| | || || || || || || ||||| || | || || |||||||| || || Sbjct 16217 AAACTTACGTGCGTATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAAGATCCTGAATT 16158 Query 173862 CGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCATC 173921 || |||||||| || || ||||| ||| | || |||||||| | || |||||| | | Sbjct 16157 TGAAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGC 16098 Query 173922 TGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCAAGAGGTAACGC 173981 | |||||| || ||||| || | ||||| || || || || |||||| | || ||||| Sbjct 16097 TCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGC 16038 Query 173982 ACTTTAA 173988 |||||| Sbjct 16037 TCTTTAA 16031 Score = 163 bits (180), Expect = 3e-35 Identities = 222/307 (72%), Gaps = 2/307 (1%) Strand=Plus/Minus Query 173683 TTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTTACACTTCCTCATG 173742 ||||||||||| || |||||| | || |||||||| ||| | | ||||||||| | ||| Sbjct 145781 TTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAATAAACGTTGGTTACACTTCTTTATG 145722 Query 173743 TTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGTAGGTCTTGCACTT 173802 || || || || || | ||| | |||| | || ||| | |||||| | || || Sbjct 145721 TTATTTGTTCCGGTAACTGGTCTTTGGATGAGTGCAATTGGTGTAGTAGGTTTAGC-TTT 145663 Query 173803 AACCTTA-GAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGATCCAGAGTT 173861 || |||| | || || || || || || ||||| || | || || |||||||| || || Sbjct 145662 AAACTTACGTGCGTATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAAGATCCTGAATT 145603 Query 173862 CGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCATC 173921 || |||||||| || || ||||| ||| | || |||||||| | || |||||| | | Sbjct 145602 TGAAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGC 145543 Query 173922 TGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCAAGAGGTAACGC 173981 | |||||| || ||||| || | ||||| || || || || |||||| | || ||||| Sbjct 145542 TCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGC 145483 Query 173982 ACTTTAA 173988 |||||| Sbjct 145482 TCTTTAA 145476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588048987457360