Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micractinium_20conductrix_20[genbank_20GCA_5F002245815.1_202017-08- 10] 301 sequences; 61,020,757 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq52 601 1e-167 >seq52 Length=149364 Score = 601 bits (666), Expect = 1e-167 Identities = 733/995 (74%), Gaps = 6/995 (1%) Strand=Plus/Plus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| || | |||| ||| | ||||||||||||||| || || || ||||||||||||||| Sbjct 85198 TCAACAACAGCTAAATCTAATGGGAAGTTGTGAGCGTTACGCTCATGCATTACTTCCATA 85257 Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCA 5305 ||||||||||||||||| | | |||||||||||| | | | ||| || || Sbjct 85258 CCAAGGTTGGCACGGTTGATAATGTCTGCCCAAGTGTTGATTACACGACCTTGTGAATCT 85317 Query 5306 ACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATA 5365 || ||||| || |||||||| || || || | || || |||||||| || || || | | Sbjct 85318 ACAACTGATTGGTTGAAGTTGAAACCATTTAAGTTGAATGCCATAGTTGAAATACCTAAA 85377 Query 5366 GAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTA 5425 | || | ||| || | ||| || ||||||| ||| | |||||||||||| ||| Sbjct 85378 GCAGTGAACCAAATACCAACAACTGGCCAAGCAGCTAAGAAGAAATGTAATGAACGAGAG 85437 Query 5426 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 5485 ||||| || |||||| ||||| || | | || |||||||||||||| ||||| ||| Sbjct 85438 TTGTTGAAAGAAGCATATTGGAAAATTAAACGACCGAAGTAGCCATGAGCTGCAACGATG 85497 Query 5486 TTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTT--CTGAGAAGTAAGCCCAG 5543 || || |||||||| ||||| |||||||| || || | ||| |||| || | || Sbjct 85498 TTGTAAGTTTCTTCTTCTTGACCGAATTTGTAACCTTCGTTAGCTGATTCGTTTTC--AG 85555 Query 5544 TTGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTC 5603 ||||||||||||| | |||||||| ||||| || |||||||||| ||| || | | Sbjct 85556 TTGTTTCACGAATTAAAGAAGAAGTTACAAGTGAACCGTGCATAGCAGAGAATAATGAAC 85615 Query 5604 CACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTG 5663 |||| ||||| ||||||||||| ||||| ||||| || ||||||||||| ||||| || | Sbjct 85616 CACCAAATACACCAGCAACACCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCAG 85675 Query 5664 CCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGA 5723 | |||||||||| ||| ||||| ||||||||||||||||| | ||||||||||||| || Sbjct 85676 CTTGGAATACGATCATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGA 85735 Query 5724 AACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCT 5782 || || || |||| || || | | ||||| | ||| ||||| ||||| |||||| Sbjct 85736 AAGAACCTTGACCGATTGGATAAATGATGAATACAGCTGTA-GCTGCAGCAACTGGTGCT 85794 Query 5783 GAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGT 5842 || || || || ||||| || ||||| ||||| | || | |||||| | || Sbjct 85795 GAGTAAGCAACTGCGATCCAAGGACGCATACCTAAACGAAAAGATAATTCCCACTCACGA 85854 Query 5843 CCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCA 5902 |||| ||| | | || | | ||| ||| | |||| |||||||| || || ||| Sbjct 85855 CCCATGTATGAACAAACGCCTAAGAAGAAATGGCAAACGATAAGTTGGTAAGGACCACCA 85914 Query 5903 TTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATT 5962 ||||| | ||| ||||| ||| ||||||||||| || || ||||||||||| || || Sbjct 85915 TTGTATAACCACTCATCAAGAGAAGCTGCTTCCCAAATTGGGTAGAAGTGTAAACCGATA 85974 Query 5963 GCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCT 6022 ||||| || | || | || || || | ||||| ||||||||||| |||| || ||| Sbjct 85975 GCGTTAGAAGTTGGAATAATAGCACCAGTGATGATATTGTTTCCATATAGTAATGAACCT 86034 Query 6023 GCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATA 6082 | || || ||||| || || ||||| ||||| || || || || | ||||| | ||| Sbjct 86035 GAAACAGGCTCACGGATACCATCGATATCGACAGGCGGAGCTGCGATAAATGCGATGATA 86094 Query 6083 AATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAG 6142 ||| | | ||| || ||||| | | || |||||||| ||||||||||| || | || Sbjct 86095 AATACTGAAGTAGCTGTTAATAAAGTAGGGATCATTAACACACCAAACCAACCGATGTAT 86154 Query 6143 AGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 | ||||| | |||||||| ||||| ||||| || Sbjct 86155 AAACGGTTTTCAGTGCTAGTTACCCACTCACAAAA 86189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152649054373086