Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micractinium_20conductrix_20[genbank_20GCA_5F002245815.1_202017-08- 10] 301 sequences; 61,020,757 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq52 717 0.0 >seq52 Length=149364 Score = 717 bits (794), Expect = 0.0 Identities = 757/994 (76%), Gaps = 2/994 (0%) Strand=Plus/Minus Query 162891 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 162950 ||| || |||||||||||| || | ||||| | || |||||||||| || || | Sbjct 86190 TTTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGTT 86131 Query 162951 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 163009 ||||| || ||| | || |||| ||| || || || ||| |||| || |||| |||| Sbjct 86130 AATGATCCCTACTTTATTAACAGCTACT-TCAGTATTTATCATCGCATTTATCGCAGCTC 86072 Query 163010 CCCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACA 163069 | ||||| || || || || ||||||||||| || | |||||| | | ||||| |||| Sbjct 86071 CGCCTGTCGATATCGATGGTATCCGTGAGCCTGTTTCAGGTTCATTACTATATGGAAACA 86012 Query 163070 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 163129 | |||||| ||||||| || ||||| |||| ||||| || ||| | |||||||| || | Sbjct 86011 ATATCATCACTGGTGCTATTATTCCAACTTCTAACGCTATCGGTTTACACTTCTACCCAA 85952 Query 163130 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 163189 | |||||||| || || |||||||||||| | || || |||||||||| |||||| | | Sbjct 85951 TTTGGGAAGCAGCTTCTCTTGATGAGTGGTTATACAATGGTGGTCCTTACCAACTTATCG 85892 Query 163190 TCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATATC 163249 | | || ||| | | ||| | | | |||| ||||| ||||| |||||| | || | || Sbjct 85891 TTTGCCATTTCTTCTTAGGCGTTTGTTCATACATGGGTCGTGAGTGGGAATTATCTTTTC 85832 Query 163250 GCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCG 163309 | ||||||||||| || |||||| || || ||||| ||||| ||||| ||||| | | Sbjct 85831 GTTTAGGTATGCGTCCTTGGATCGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAG 85772 Query 163310 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCA 163369 | || ||| | | ||||| |||||||||||||||||||||| | ||||| | || | Sbjct 85771 CTGTATTCATCATTTATCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTA 85712 Query 163370 TCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 163429 ||||||| || ||||||| |||| | || |||||||| |||||||||||||| ||||||| Sbjct 85711 TCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACC 85652 Query 163430 CCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCATG 163489 | ||||||||| | || || |||||||| || ||||| ||| | ||||| || ||||| | Sbjct 85651 CATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACG 85592 Query 163490 GCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAAAACTATG 163549 | ||||| || ||||| | | ||||| || ||||||| || ||| ||| | | Sbjct 85591 GTTCACTTGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCAGCTAACGAAG 85532 Query 163550 GTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCG 163609 ||||||| || |||||||||||||| || ||||||||||||||||| ||||||||||||| Sbjct 85531 GTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCATGGCTACTTCG 85472 Query 163610 GTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTGG 163669 ||||||| || ||||||||||| || ||||||||| | | || |||||| | | Sbjct 85471 GTCGTTTAATTTTCCAATATGCTTCTTTCAACAACTCTCGTTCATTACATTTCTTCTTAG 85412 Query 163670 CAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCATTCA 163729 | || ||||| || || || || ||||| ||||| | || | || |||||||||| Sbjct 85411 CTGCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTCA 85352 Query 163730 ACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACA 163789 || | || ||||||||||||||||| || | | ||| || |||||||| |||||| Sbjct 85351 ACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACA 85292 Query 163790 CTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACG 163849 ||||||||||| | | ||||| || || ||||||||||| |||||||||||||||| Sbjct 85291 CTTGGGCAGACATTATCAACCGTGCCAACCTTGGTATGGAAGTAATGCATGAGCGTAACG 85232 Query 163850 CACACAACTTCCCACTCGATCTTGCTGCTGCTGA 163883 | |||||||||||| | ||| | |||| || ||| Sbjct 85231 CTCACAACTTCCCATTAGATTTAGCTGTTGTTGA 85198 Score = 349 bits (386), Expect = 4e-91 Identities = 502/705 (71%), Gaps = 2/705 (0%) Strand=Plus/Minus Query 164601 GGGTGGTTCGACATCCTAGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGG 164660 || ||||| || | |||||||||||||| || || || || || ||| | || ||| Sbjct 18098 GGTTGGTTTGATGTAGTAGATGACTGGCTTCGTCGTGACCGTTTCGTCTTTCTAGGATGG 18039 Query 164661 TCTGGATTACTACTTCTTCCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACA 164720 || || ||| || | | || || || || ||||| |||| |||||| |||| || || Sbjct 18038 TCAGGGTTATTATTATTGCCTACAGCATACCTGGCACTTGGTGGTTGGTTTACAGGAACT 17979 Query 164721 GCTTTTGTCACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAAC 164780 | ||||| ||| |||||| || |||||| | || ||||| ||| | ||||| ||| Sbjct 17978 ACATTTGTAACGTCTTGGTATACTCATGGTTTAGCATCTTCATATTTAGAAGGATGTAAT 17919 Query 164781 TTTCTCACAGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT 164840 || | ||||||||||| || || || || || ||||||||||||| | | | ||| Sbjct 17918 TTCTTAACAGCAGCTGTTTCAACTCCAGCGAATAGTATGGGTCATTCTTTATTATTCCTT 17859 Query 164841 TGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAAT 164900 ||||| || || |||| || ||||| || ||||| |||||||| || ||||||| Sbjct 17858 TGGGGCCCAGAAGCTCAAGGCGATTTCACACGTTGGTGTCAACTTGGTGGTCTATGGACG 17799 Query 164901 TTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTG 164960 || || ||||| |||||||| || || || |||||||| ||||| || |||||||| | Sbjct 17798 TTTGTTGCTCTTCACGGTGCATTTGCTCTGATTGGTTTTATGCTTCGTCAGTTTGAAATT 17739 Query 164961 GCACGTCTCATTGGT-ATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGT 165019 |||||| ||| | || || |||||||| || ||||| || || | || ||| |||| Sbjct 17738 GCACGT-TCAGTAAAGATTCGCCCTTACAACGCAATTGCATTTTCAGCACCAATTTCTGT 17680 Query 165020 TTTTGTCAGCGTCTTCCTTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTC 165079 || || || ||| | || ||||| | || || || ||||||| || || || Sbjct 17679 ATTCGTTTCTGTATTCTTAATTTACCCTTTAGGACAATCTGGTTGGTTCTTTGCACCAAG 17620 Query 165080 CTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGAC 165139 |||||| || || ||||| || ||||| | || ||| | ||||| ||||| |||||||| Sbjct 17619 CTTTGGTGTTGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGAC 17560 Query 165140 CCTCAACCCCTTCCATATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGC 165199 | ||||| ||||||||||||||||| || ||| | | |||| || | || | ||| Sbjct 17559 TTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGAGCTGCTCTACTTTGTGC 17500 Query 165200 TATTCATGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTT 165259 |||||||| | || || |||||||| | | |||||||| || ||||| || || Sbjct 17499 AATTCATGGCGCAACTGTAGAAAATACGCTTTTTGAGGATGGTGATGGTGCAAACACATT 17440 Query 165260 TAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGT 165304 || ||| | | || || | ||||| || || || ||||| Sbjct 17439 CCGTGCTTTTAACCCAACTCAAGCTGAAGAAACATACTCAATGGT 17395 Score = 349 bits (386), Expect = 4e-91 Identities = 502/705 (71%), Gaps = 2/705 (0%) Strand=Plus/Minus Query 164601 GGGTGGTTCGACATCCTAGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGG 164660 || ||||| || | |||||||||||||| || || || || || ||| | || ||| Sbjct 147543 GGTTGGTTTGATGTAGTAGATGACTGGCTTCGTCGTGACCGTTTCGTCTTTCTAGGATGG 147484 Query 164661 TCTGGATTACTACTTCTTCCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACA 164720 || || ||| || | | || || || || ||||| |||| |||||| |||| || || Sbjct 147483 TCAGGGTTATTATTATTGCCTACAGCATACCTGGCACTTGGTGGTTGGTTTACAGGAACT 147424 Query 164721 GCTTTTGTCACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAAC 164780 | ||||| ||| |||||| || |||||| | || ||||| ||| | ||||| ||| Sbjct 147423 ACATTTGTAACGTCTTGGTATACTCATGGTTTAGCATCTTCATATTTAGAAGGATGTAAT 147364 Query 164781 TTTCTCACAGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT 164840 || | ||||||||||| || || || || || ||||||||||||| | | | ||| Sbjct 147363 TTCTTAACAGCAGCTGTTTCAACTCCAGCGAATAGTATGGGTCATTCTTTATTATTCCTT 147304 Query 164841 TGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAAT 164900 ||||| || || |||| || ||||| || ||||| |||||||| || ||||||| Sbjct 147303 TGGGGCCCAGAAGCTCAAGGCGATTTCACACGTTGGTGTCAACTTGGTGGTCTATGGACG 147244 Query 164901 TTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTG 164960 || || ||||| |||||||| || || || |||||||| ||||| || |||||||| | Sbjct 147243 TTTGTTGCTCTTCACGGTGCATTTGCTCTGATTGGTTTTATGCTTCGTCAGTTTGAAATT 147184 Query 164961 GCACGTCTCATTGGT-ATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGT 165019 |||||| ||| | || || |||||||| || ||||| || || | || ||| |||| Sbjct 147183 GCACGT-TCAGTAAAGATTCGCCCTTACAACGCAATTGCATTTTCAGCACCAATTTCTGT 147125 Query 165020 TTTTGTCAGCGTCTTCCTTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTC 165079 || || || ||| | || ||||| | || || || ||||||| || || || Sbjct 147124 ATTCGTTTCTGTATTCTTAATTTACCCTTTAGGACAATCTGGTTGGTTCTTTGCACCAAG 147065 Query 165080 CTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGAC 165139 |||||| || || ||||| || ||||| | || ||| | ||||| ||||| |||||||| Sbjct 147064 CTTTGGTGTTGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGAC 147005 Query 165140 CCTCAACCCCTTCCATATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGC 165199 | ||||| ||||||||||||||||| || ||| | | |||| || | || | ||| Sbjct 147004 TTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGAGCTGCTCTACTTTGTGC 146945 Query 165200 TATTCATGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTT 165259 |||||||| | || || |||||||| | | |||||||| || ||||| || || Sbjct 146944 AATTCATGGCGCAACTGTAGAAAATACGCTTTTTGAGGATGGTGATGGTGCAAACACATT 146885 Query 165260 TAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGT 165304 || ||| | | || || | ||||| || || || ||||| Sbjct 146884 CCGTGCTTTTAACCCAACTCAAGCTGAAGAAACATACTCAATGGT 146840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563207480923880