Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micractinium_20conductrix_20[genbank_20GCA_5F002245815.1_202017-08- 10] 301 sequences; 61,020,757 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq52 720 0.0 >seq52 Length=149364 Score = 720 bits (798), Expect = 0.0 Identities = 743/972 (76%), Gaps = 0/972 (0%) Strand=Plus/Minus Query 8247 TTTTTGCGAATGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCT 8306 |||||| || ||||| ||| || | || || || || |||| |||||||| || | Sbjct 86190 TTTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGTT 86131 Query 8307 CATGATCCCAACCCTTCTTGCCGCTACAATTTGCTTCATTACCGCATTCGTTGCTGCTCC 8366 |||||||| || | | | ||||| || || | |||||| | || ||||| Sbjct 86130 AATGATCCCTACTTTATTAACAGCTACTTCAGTATTTATCATCGCATTTATCGCAGCTCC 86071 Query 8367 TCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAACAA 8426 ||||| || ||||| || ||||| || || ||| | || || | | || || ||||| Sbjct 86070 GCCTGTCGATATCGATGGTATCCGTGAGCCTGTTTCAGGTTCATTACTATATGGAAACAA 86011 Query 8427 CATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCCCAT 8486 |||||| ||||||| || |||| | |||||||| || || | ||||||||||| || Sbjct 86010 TATCATCACTGGTGCTATTATTCCAACTTCTAACGCTATCGGTTTACACTTCTACCCAAT 85951 Query 8487 CTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGT 8546 |||||||| |||||||||||||||||| | ||||| |||||||||||||| ||| | || Sbjct 85950 TTGGGAAGCAGCTTCTCTTGATGAGTGGTTATACAATGGTGGTCCTTACCAACTTATCGT 85891 Query 8547 TTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGAATGGGAACTTTCTTACCG 8606 || ||| ||| || | ||||| | | | || ||||||||||| |||||| | |||| || Sbjct 85890 TTGCCATTTCTTCTTAGGCGTTTGTTCATACATGGGTCGTGAGTGGGAATTATCTTTTCG 85831 Query 8607 CCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGC 8666 | || ||||||||||||||| ||||| ||||| || || ||||| || ||| | || Sbjct 85830 TTTAGGTATGCGTCCTTGGATCGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGC 85771 Query 8667 TGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTAT 8726 ||||||| | | ||||| | ||||||||||| |||||||||||||||||| | ||||| Sbjct 85770 TGTATTCATCATTTATCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 85711 Query 8727 CTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCC 8786 ||| ||||| ||||||| ||| | || ||||| ||||||||||||||||| |||||||| Sbjct 85710 CTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 85651 Query 8787 CTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGG 8846 ||||| |||||||||||||||||||| || || || || | || || || ||||| || Sbjct 85650 ATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGG 85591 Query 8847 TTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTATGG 8906 |||||| || |||||||| | ||||||| || || |||| ||| || ||| | || Sbjct 85590 TTCACTTGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCAGCTAACGAAGG 85531 Query 8907 CTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTGG 8966 ||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||| || Sbjct 85530 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCATGGCTACTTCGG 85471 Query 8967 TCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGC 9026 ||| || || ||||||||||| ||||| ||||| ||| | || ||||||||| | || Sbjct 85470 TCGTTTAATTTTCCAATATGCTTCTTTCAACAACTCTCGTTCATTACATTTCTTCTTAGC 85411 Query 9027 TGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTTTCAA 9086 ||| ||||| || || || || ||||| || || | || | || || ||||| ||||| Sbjct 85410 TGCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTCAA 85351 Query 9087 CCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGACGAGTGCTCAACAC 9146 | | ||||| |||||||||||||| || || | || |||||| || || ||||||| Sbjct 85350 CTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACAC 85291 Query 9147 CTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGCACGAAAGAAACGC 9206 ||||||||| | | ||||| || || ||||||||||| ||||| || | ||||| Sbjct 85290 TTGGGCAGACATTATCAACCGTGCCAACCTTGGTATGGAAGTAATGCATGAGCGTAACGC 85231 Query 9207 ACACAACTTCCC 9218 ||||||||||| Sbjct 85230 TCACAACTTCCC 85219 Score = 343 bits (380), Expect = 2e-89 Identities = 498/703 (71%), Gaps = 0/703 (0%) Strand=Plus/Minus Query 9812 TGGTTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCT 9871 |||||||| | | |||||||||||| || || || || || ||| | || ||||| Sbjct 18095 TGGTTTGATGTAGTAGATGACTGGCTTCGTCGTGACCGTTTCGTCTTTCTAGGATGGTCA 18036 Query 9872 GGACTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACG 9931 || || | | || || || || || || ||| ||||||| ||| |||| || ||||| Sbjct 18035 GGGTTATTATTATTGCCTACAGCATACCTGGCACTTGGTGGTTGGTTTACAGGAACTACA 17976 Query 9932 TTTGTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTTC 9991 ||||| ||| |||||| ||||| || | ||| | || | || || ||||||| Sbjct 17975 TTTGTAACGTCTTGGTATACTCATGGTTTAGCATCTTCATATTTAGAAGGATGTAATTTC 17916 Query 9992 CTTACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGG 10051 | ||||| ||||| ||||| || || || ||||||||||||| | | | |||||| Sbjct 17915 TTAACAGCAGCTGTTTCAACTCCAGCGAATAGTATGGGTCATTCTTTATTATTCCTTTGG 17856 Query 10052 GGTCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTT 10111 || || || |||| || |||||| || ||| || ||||| || || ||| | ||| Sbjct 17855 GGCCCAGAAGCTCAAGGCGATTTCACACGTTGGTGTCAACTTGGTGGTCTATGGACGTTT 17796 Query 10112 GTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCG 10171 || || || ||||| || || ||| | || || |||||| | || |||||||| | || Sbjct 17795 GTTGCTCTTCACGGTGCATTTGCTCTGATTGGTTTTATGCTTCGTCAGTTTGAAATTGCA 17736 Query 10172 AGATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTT 10231 | | | | || || |||||||| || || || ||||| | || ||| |||| || Sbjct 17735 CGTTCAGTAAAGATTCGCCCTTACAACGCAATTGCATTTTCAGCACCAATTTCTGTATTC 17676 Query 10232 GTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTC 10291 || ||| ||| | || || || | ||||| ||| ||||||||||||| || || || Sbjct 17675 GTTTCTGTATTCTTAATTTACCCTTTAGGACAATCTGGTTGGTTCTTTGCACCAAGCTTT 17616 Query 10292 GGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTC 10351 || || || || |||||||| ||| || | ||| |||| || || ||||| ||||| | Sbjct 17615 GGTGTTGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGACTTTA 17556 Query 10352 AATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATC 10411 || || |||||||||||||| || || ||| |||| |||| || || || | ||||| Sbjct 17555 AACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGAGCTGCTCTACTTTGTGCAATT 17496 Query 10412 CACGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAA 10471 || || | ||||||||||| || |||| | | ||||| || |||||||| ||| Sbjct 17495 CATGGCGCAACTGTAGAAAATACGCTTTTTGAGGATGGTGATGGTGCAAACACATTCCGT 17436 Query 10472 GCTTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTA 10514 |||||| | ||||||| ||||| || || || ||||||| Sbjct 17435 GCTTTTAACCCAACTCAAGCTGAAGAAACATACTCAATGGTTA 17393 Score = 343 bits (380), Expect = 2e-89 Identities = 498/703 (71%), Gaps = 0/703 (0%) Strand=Plus/Minus Query 9812 TGGTTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCT 9871 |||||||| | | |||||||||||| || || || || || ||| | || ||||| Sbjct 147540 TGGTTTGATGTAGTAGATGACTGGCTTCGTCGTGACCGTTTCGTCTTTCTAGGATGGTCA 147481 Query 9872 GGACTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACG 9931 || || | | || || || || || || ||| ||||||| ||| |||| || ||||| Sbjct 147480 GGGTTATTATTATTGCCTACAGCATACCTGGCACTTGGTGGTTGGTTTACAGGAACTACA 147421 Query 9932 TTTGTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTTC 9991 ||||| ||| |||||| ||||| || | ||| | || | || || ||||||| Sbjct 147420 TTTGTAACGTCTTGGTATACTCATGGTTTAGCATCTTCATATTTAGAAGGATGTAATTTC 147361 Query 9992 CTTACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGG 10051 | ||||| ||||| ||||| || || || ||||||||||||| | | | |||||| Sbjct 147360 TTAACAGCAGCTGTTTCAACTCCAGCGAATAGTATGGGTCATTCTTTATTATTCCTTTGG 147301 Query 10052 GGTCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTT 10111 || || || |||| || |||||| || ||| || ||||| || || ||| | ||| Sbjct 147300 GGCCCAGAAGCTCAAGGCGATTTCACACGTTGGTGTCAACTTGGTGGTCTATGGACGTTT 147241 Query 10112 GTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCG 10171 || || || ||||| || || ||| | || || |||||| | || |||||||| | || Sbjct 147240 GTTGCTCTTCACGGTGCATTTGCTCTGATTGGTTTTATGCTTCGTCAGTTTGAAATTGCA 147181 Query 10172 AGATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTT 10231 | | | | || || |||||||| || || || ||||| | || ||| |||| || Sbjct 147180 CGTTCAGTAAAGATTCGCCCTTACAACGCAATTGCATTTTCAGCACCAATTTCTGTATTC 147121 Query 10232 GTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTC 10291 || ||| ||| | || || || | ||||| ||| ||||||||||||| || || || Sbjct 147120 GTTTCTGTATTCTTAATTTACCCTTTAGGACAATCTGGTTGGTTCTTTGCACCAAGCTTT 147061 Query 10292 GGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTC 10351 || || || || |||||||| ||| || | ||| |||| || || ||||| ||||| | Sbjct 147060 GGTGTTGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGACTTTA 147001 Query 10352 AATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATC 10411 || || |||||||||||||| || || ||| |||| |||| || || || | ||||| Sbjct 147000 AACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGAGCTGCTCTACTTTGTGCAATT 146941 Query 10412 CACGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAA 10471 || || | ||||||||||| || |||| | | ||||| || |||||||| ||| Sbjct 146940 CATGGCGCAACTGTAGAAAATACGCTTTTTGAGGATGGTGATGGTGCAAACACATTCCGT 146881 Query 10472 GCTTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTA 10514 |||||| | ||||||| ||||| || || || ||||||| Sbjct 146880 GCTTTTAACCCAACTCAAGCTGAAGAAACATACTCAATGGTTA 146838 Score = 179 bits (198), Expect = 4e-40 Identities = 216/294 (73%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 10514 ACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTT 10573 ||||| || ||||||||||| || || ||||| | |||||| |||||||| ||| | Sbjct 16348 ACTGCAAATCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAATAAACGTTGGTTA 16289 Query 10574 CATTTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATT 10633 || ||||||||| | ||||| || || | |||||||||| | | ||||| | | Sbjct 16288 CACTTCTTTATGTTATTTGTTCCGGTAACTGGTCTTTGGATGAGTGCAATTGGTGTAGTA 16229 Query 10634 GGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAA 10693 ||| | ||| | || | ||||| || ||||| || || ||||| || | || | ||| Sbjct 16228 GGTTTAGCTTTAAACTTACGTGCGTATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAA 16169 Query 10694 GATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCA 10753 |||||||||||||| || |||||||| || ||||| ||| | ||||||||| ||||||| Sbjct 16168 GATCCTGAATTTGAAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 16109 Query 10754 TGGATGGCACCAGTTGACCAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTT 10807 |||||||| | || || || || |||| |||| ||||| || || ||| Sbjct 16108 TGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTT 16055 Score = 179 bits (198), Expect = 4e-40 Identities = 216/294 (73%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 10514 ACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTT 10573 ||||| || ||||||||||| || || ||||| | |||||| |||||||| ||| | Sbjct 145793 ACTGCAAATCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAATAAACGTTGGTTA 145734 Query 10574 CATTTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATT 10633 || ||||||||| | ||||| || || | |||||||||| | | ||||| | | Sbjct 145733 CACTTCTTTATGTTATTTGTTCCGGTAACTGGTCTTTGGATGAGTGCAATTGGTGTAGTA 145674 Query 10634 GGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAA 10693 ||| | ||| | || | ||||| || ||||| || || ||||| || | || | ||| Sbjct 145673 GGTTTAGCTTTAAACTTACGTGCGTATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAA 145614 Query 10694 GATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCA 10753 |||||||||||||| || |||||||| || ||||| ||| | ||||||||| ||||||| Sbjct 145613 GATCCTGAATTTGAAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 145554 Query 10754 TGGATGGCACCAGTTGACCAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTT 10807 |||||||| | || || || || |||| |||| ||||| || || ||| Sbjct 145553 TGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTT 145500 Score = 86.0 bits (94), Expect = 6e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 15401 TCGGGAATTAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGCCACAGGTTCAA 15460 |||||| ||||||||||||||||||| |||| ||||||| ||||| | | ||||||| | Sbjct 38280 TCGGGATGTAGCGCAGTTTGGTAGCGCTCCTGTTTTGGGAACAGGAGGTCGCAGGTTCGA 38339 Query 15461 ATCCTGTATTCCCGA 15475 ||||||| |||||| Sbjct 38340 ATCCTGTCATCCCGA 38354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516478056744000