Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micractinium_20conductrix_20[genbank_20GCA_5F002245815.1_202017-08- 10] 301 sequences; 61,020,757 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq52 755 0.0 >seq52 Length=149364 Score = 755 bits (836), Expect = 0.0 Identities = 767/994 (77%), Gaps = 4/994 (0%) Strand=Plus/Minus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 |||||| | ||||| || ||||| || ||||| | || | |||||||| || || | Sbjct 86189 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGTTA 86130 Query 160936 ATGATTCCCTGCTTGCTCG-CTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTC 160993 ||||| |||| ||| | | ||||| | || || ||||| || || | | |||| Sbjct 86129 ATGAT-CCCTACTTTATTAACAGCTACT-TCAGTATTTATCATCGCATTTATCGCAGCTC 86072 Query 160994 CCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 161053 | ||||| || ||||| || || ||||| || || | ||||| | | |||||||||| Sbjct 86071 CGCCTGTCGATATCGATGGTATCCGTGAGCCTGTTTCAGGTTCATTACTATATGGAAACA 86012 Query 161054 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 161113 | |||||| |||||||| |||| || ||||||||||||||||| | ||||||||||| | Sbjct 86011 ATATCATCACTGGTGCTATTATTCCAACTTCTAACGCTATCGGTTTACACTTCTACCCAA 85952 Query 161114 TCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTG 161173 | ||||||||||| ||| || || ||| | ||||| |||||||||| |||||| | | Sbjct 85951 TTTGGGAAGCAGCTTCTCTTGATGAGTGGTTATACAATGGTGGTCCTTACCAACTTATCG 85892 Query 161174 TGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 161233 | | ||| ||| | | ||| | | | | ||||||||||||||||||||| | |||| | Sbjct 85891 TTTGCCATTTCTTCTTAGGCGTTTGTTCATACATGGGTCGTGAGTGGGAATTATCTTTTC 85832 Query 161234 GTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTG 161293 || | || |||||||||||||| || || ||||| || || || |||||||| | | Sbjct 85831 GTTTAGGTATGCGTCCTTGGATCGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAG 85772 Query 161294 CAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCA 161353 | || ||| | | ||||| |||||||||||||||||||||||| |||||| | || | Sbjct 85771 CTGTATTCATCATTTATCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTA 85712 Query 161354 TCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACC 161413 |||||||||| ||||||| |||| | || |||||||| ||||||||||| || ||||||| Sbjct 85711 TCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACC 85652 Query 161414 CCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACG 161473 | ||||||||||| || || || ||||| ||||| ||||| | ||| ||| ||||||| Sbjct 85651 CATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACG 85592 Query 161474 GTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATG 161533 |||| || || || ||||| | |||||||||| || |||||||| || ||| | | Sbjct 85591 GTTCACTTGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCAGCTAACGAAG 85532 Query 161534 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCG 161593 ||||||| ||||||||||||||||| || |||||||||||||| || || || ||||||| Sbjct 85531 GTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCATGGCTACTTCG 85472 Query 161594 GTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTG 161653 ||||| | ||||||||||| ||||| ||||||||||| || || | || |||||| | | Sbjct 85471 GTCGTTTAATTTTCCAATATGCTTCTTTCAACAACTCTCGTTCATTACATTTCTTCTTAG 85412 Query 161654 CTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCA 161713 |||||||||| |||||||| || ||||||||||| | || | || |||||||||| Sbjct 85411 CTGCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTCA 85352 Query 161714 ACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACA 161773 || | |||||||||||||||||||| || | || ||| || ||| || ||||||| Sbjct 85351 ACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACA 85292 Query 161774 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATG 161833 | ||||||||| || |||||||||| ||||| |||||||| ||||| ||||| || | Sbjct 85291 CTTGGGCAGACATTATCAACCGTGCCAACCTTGGTATGGAAGTAATGCATGAGCGTAACG 85232 Query 161834 CTCACAACTTCCCTCTTGACCTTGCTGCTGCTGA 161867 ||||||||||||| | || | |||| || ||| Sbjct 85231 CTCACAACTTCCCATTAGATTTAGCTGTTGTTGA 85198 Score = 410 bits (454), Expect = 1e-109 Identities = 523/713 (73%), Gaps = 14/713 (2%) Strand=Plus/Minus Query 162111 GGGTGGTTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGG 162170 || ||||||||||| | || ||||||||| | ||||||||||| ||| | || ||| Sbjct 18098 GGTTGGTTTGATGTAGTAGATGACTGGCTTCGTCGTGACCGTTTCGTCTTTCTAGGATGG 18039 Query 162171 TCTGGACTTCTTCTTTTTCCC-ACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGAC 162229 || || || || || || || || || || || || ||||| |||||| |||| || || Sbjct 18038 TCAGGG-TTATTATTATTGCCTACAGCATACCTGGCACTTGGTGGTTGGTTTACAGGAAC 17980 Query 162230 TACTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGG-TGCAA 162288 ||| || || ||| |||||||||||| || | || ||| ||| | || || || || Sbjct 17979 TACATTTGTAACGTCTTGGTATACTCATGGTTTAGCATCTTCATATTTAGAAGGATGTAA 17920 Query 162289 ACTTTCTTA-CTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTT 162347 ||||||| | || || ||||| |||||||| | ||||||||||||| | | | Sbjct 17919 --TTTCTTAACAGCAGCTGTTTCAACTCCAGCGAATAGTATGGGTCATTCTTTATTATTC 17862 Query 162348 CTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGG 162407 || ||||| || || ||||||| || |||| || ||||| |||||||| || || ||| Sbjct 17861 CTTTGGGGCCCAGAAGCTCAAGGCGATTTCACACGTTGGTGTCAACTTGGTGGTCTATGG 17802 Query 162408 ACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAA 162467 || ||||| || || ||||| || ||||| || || ||||| |||||||| ||||||||| Sbjct 17801 ACGTTTGTTGCTCTTCACGGTGCATTTGCTCTGATTGGTTTTATGCTTCGTCAGTTTGAA 17742 Query 162468 CTGGCACGACTTATCGGT----ATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTAT 162523 | ||||| || || ||||| |||||||| || ||||| || |||| || || Sbjct 17741 ATTGCACG----TTCAGTAAAGATTCGCCCTTACAACGCAATTGCATTTTCAGCACCAAT 17686 Query 162524 TGCTGTATTCGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGC 162583 | ||||||||||| ||| || | || || ||||| |||||||| |||||||| || Sbjct 17685 TTCTGTATTCGTTTCTGTATTCTTAATTTACCCTTTAGGACAATCTGGTTGGTTCTTTGC 17626 Query 162584 ACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAA 162643 ||| || || || || ||||| ||||||||| | | ||| ||||||| |||||||| Sbjct 17625 ACCAAGCTTTGGTGTTGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAA 17566 Query 162644 CTGGACGCTAAATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCT 162703 |||||| |||| ||||| || |||||||| ||||| ||| | ||||| | ||| | || Sbjct 17565 CTGGACTTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGAGCTGCTCTACT 17506 Query 162704 CTCTGCTATTCATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAA 162763 | ||| |||||||| | || || |||||||| || | || ||||| || ||||| Sbjct 17505 TTGTGCAATTCATGGCGCAACTGTAGAAAATACGCTTTTTGAGGATGGTGATGGTGCAAA 17446 Query 162764 CACTTTTAAAGCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTA 162816 ||| || || ||| || | || || | |||||||| || || ||||||| Sbjct 17445 CACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACATACTCAATGGTTA 17393 Score = 410 bits (454), Expect = 1e-109 Identities = 523/713 (73%), Gaps = 14/713 (2%) Strand=Plus/Minus Query 162111 GGGTGGTTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGG 162170 || ||||||||||| | || ||||||||| | ||||||||||| ||| | || ||| Sbjct 147543 GGTTGGTTTGATGTAGTAGATGACTGGCTTCGTCGTGACCGTTTCGTCTTTCTAGGATGG 147484 Query 162171 TCTGGACTTCTTCTTTTTCCC-ACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGAC 162229 || || || || || || || || || || || || ||||| |||||| |||| || || Sbjct 147483 TCAGGG-TTATTATTATTGCCTACAGCATACCTGGCACTTGGTGGTTGGTTTACAGGAAC 147425 Query 162230 TACTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGG-TGCAA 162288 ||| || || ||| |||||||||||| || | || ||| ||| | || || || || Sbjct 147424 TACATTTGTAACGTCTTGGTATACTCATGGTTTAGCATCTTCATATTTAGAAGGATGTAA 147365 Query 162289 ACTTTCTTA-CTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTT 162347 ||||||| | || || ||||| |||||||| | ||||||||||||| | | | Sbjct 147364 --TTTCTTAACAGCAGCTGTTTCAACTCCAGCGAATAGTATGGGTCATTCTTTATTATTC 147307 Query 162348 CTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGG 162407 || ||||| || || ||||||| || |||| || ||||| |||||||| || || ||| Sbjct 147306 CTTTGGGGCCCAGAAGCTCAAGGCGATTTCACACGTTGGTGTCAACTTGGTGGTCTATGG 147247 Query 162408 ACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAA 162467 || ||||| || || ||||| || ||||| || || ||||| |||||||| ||||||||| Sbjct 147246 ACGTTTGTTGCTCTTCACGGTGCATTTGCTCTGATTGGTTTTATGCTTCGTCAGTTTGAA 147187 Query 162468 CTGGCACGACTTATCGGT----ATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTAT 162523 | ||||| || || ||||| |||||||| || ||||| || |||| || || Sbjct 147186 ATTGCACG----TTCAGTAAAGATTCGCCCTTACAACGCAATTGCATTTTCAGCACCAAT 147131 Query 162524 TGCTGTATTCGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGC 162583 | ||||||||||| ||| || | || || ||||| |||||||| |||||||| || Sbjct 147130 TTCTGTATTCGTTTCTGTATTCTTAATTTACCCTTTAGGACAATCTGGTTGGTTCTTTGC 147071 Query 162584 ACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAA 162643 ||| || || || || ||||| ||||||||| | | ||| ||||||| |||||||| Sbjct 147070 ACCAAGCTTTGGTGTTGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAA 147011 Query 162644 CTGGACGCTAAATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCT 162703 |||||| |||| ||||| || |||||||| ||||| ||| | ||||| | ||| | || Sbjct 147010 CTGGACTTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGAGCTGCTCTACT 146951 Query 162704 CTCTGCTATTCATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAA 162763 | ||| |||||||| | || || |||||||| || | || ||||| || ||||| Sbjct 146950 TTGTGCAATTCATGGCGCAACTGTAGAAAATACGCTTTTTGAGGATGGTGATGGTGCAAA 146891 Query 162764 CACTTTTAAAGCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTA 162816 ||| || || ||| || | || || | |||||||| || || ||||||| Sbjct 146890 CACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACATACTCAATGGTTA 146838 Score = 201 bits (222), Expect = 1e-46 Identities = 233/314 (74%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 162816 ACTGCGAACCGCTTCTGGTCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTG 162875 ||||| || || ||||||||||| ||||| ||| | |||||| || || |||||||| Sbjct 16348 ACTGCAAATCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAATAAACGTTGGTTA 16289 Query 162876 CATTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATT 162935 || ||||||||| | |||||||| || | ||||| |||| ||| | || ||| | | Sbjct 16288 CACTTCTTTATGTTATTTGTTCCGGTAACTGGTCTTTGGATGAGTGCAATTGGTGTAGTA 16229 Query 162936 GGACTCGCTCTCAATCTTCGTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAA 162995 || | ||| | || | ||||| || || || || || |||||| |||| || || ||| Sbjct 16228 GGTTTAGCTTTAAACTTACGTGCGTATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAA 16169 Query 162996 GACCCTGAGTTTGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCA 163055 || ||||| ||||| || ||||||||||| || |||||| | || ||||| |||| || Sbjct 16168 GATCCTGAATTTGAAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 16109 Query 163056 TGGTTAGCACCAGTGGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCA 163115 ||| | || | || || |||||||| || |||| |||||||| ||||| || ||| Sbjct 16108 TGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCA 16049 Query 163116 AGAGGCAACGCTCT 163129 | || |||||||| Sbjct 16048 CGTGGAAACGCTCT 16035 Score = 201 bits (222), Expect = 1e-46 Identities = 233/314 (74%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 162816 ACTGCGAACCGCTTCTGGTCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTG 162875 ||||| || || ||||||||||| ||||| ||| | |||||| || || |||||||| Sbjct 145793 ACTGCAAATCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAATAAACGTTGGTTA 145734 Query 162876 CATTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATT 162935 || ||||||||| | |||||||| || | ||||| |||| ||| | || ||| | | Sbjct 145733 CACTTCTTTATGTTATTTGTTCCGGTAACTGGTCTTTGGATGAGTGCAATTGGTGTAGTA 145674 Query 162936 GGACTCGCTCTCAATCTTCGTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAA 162995 || | ||| | || | ||||| || || || || || |||||| |||| || || ||| Sbjct 145673 GGTTTAGCTTTAAACTTACGTGCGTATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAA 145614 Query 162996 GACCCTGAGTTTGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCA 163055 || ||||| ||||| || ||||||||||| || |||||| | || ||||| |||| || Sbjct 145613 GATCCTGAATTTGAAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 145554 Query 163056 TGGTTAGCACCAGTGGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCA 163115 ||| | || | || || |||||||| || |||| |||||||| ||||| || ||| Sbjct 145553 TGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCA 145494 Query 163116 AGAGGCAACGCTCT 163129 | || |||||||| Sbjct 145493 CGTGGAAACGCTCT 145480 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 157690 CGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAA 157749 |||| |||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 38281 CGGGATGTAGCGCAGTTTGGTAGCGCTCCTGTTTTGGGAACAGGAGGTCGCAGGTTCGAA 38340 Query 157750 TCCTGTCACCCCGA 157763 |||||||| ||||| Sbjct 38341 TCCTGTCATCCCGA 38354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547745139101160