Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micractinium_20conductrix_20[genbank_20GCA_5F002245815.1_202017-08- 10] 301 sequences; 61,020,757 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq53 96.9 4e-15 seq280 95.1 1e-14 seq286 91.5 1e-13 seq242 86.0 6e-12 >seq53 Length=124359 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCC 134545 ||||| | || |||| ||| ||||| || ||||| ||||| || |||||||||| |||| Sbjct 80672 CCTCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 80731 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | | ||| | ||| || ||||| ||||| || || |||| |||||||| |||||||| Sbjct 80732 AGC-GTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGG 80790 Query 134606 TATGCCTTCT 134615 |||||| || Sbjct 80791 GATGCCTGCT 80800 >seq280 Length=4282644 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCCAACGGTGTG 134554 || |||| ||| ||||| || ||||| ||||| || |||||||||| ||||| | ||| | Sbjct 2001478 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGC-GTGCG 2001536 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 ||| || ||||| ||||| || || |||| |||||||| |||||||| ||||| || Sbjct 2001537 GCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTC 2001596 Query 134615 TTTTTCTTG 134623 || || || Sbjct 2001597 CTTGTCCTG 2001605 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCCAACGGTGTG 134554 || |||| ||| ||||| || ||||| ||||| || |||||||||| ||||| | ||| | Sbjct 2002033 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGC-GTGCG 2002091 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 ||| || ||||| ||||| || || |||| |||||||| |||||||| ||||| || Sbjct 2002092 GCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTC 2002151 Query 134615 TTTTTCTTG 134623 || || || Sbjct 2002152 CTTGTCCTG 2002160 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCCAACGGTGTG 134554 || |||| ||| ||||| || ||||| ||||| || |||||||||| ||||| | ||| | Sbjct 2002588 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGC-GTGCG 2002646 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 ||| || ||||| ||||| || || |||| |||||||| |||||||| ||||| || Sbjct 2002647 GCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTC 2002706 Query 134615 TTTTTCTTG 134623 || || || Sbjct 2002707 CTTGTCCTG 2002715 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCCAACGGTGTG 134554 || |||| ||| ||||| || ||||| ||||| || |||||||||| ||||| | ||| | Sbjct 2003143 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGC-GTGCG 2003201 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 ||| || ||||| ||||| || || |||| |||||||| |||||||| ||||| || Sbjct 2003202 GCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTC 2003261 Query 134615 TTTTTCTTG 134623 || || || Sbjct 2003262 CTTGTCCTG 2003270 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/118 (79%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCCAACGGTGTG 134554 || |||| ||| ||||| || ||||| ||||| || |||||||||| ||||| | ||| | Sbjct 2003703 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGC-GTGCG 2003761 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 ||| || ||||| ||||| || || |||| |||||||| |||||||| |||||| Sbjct 2003762 GCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCT 2003819 >seq286 Length=1206827 Score = 91.5 bits (100), Expect = 1e-13 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 || |||| ||| ||||| || ||||| ||||| || ||||||||||| |||| | ||| | Sbjct 1113234 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGC-GTGCG 1113176 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 ||| || ||||| ||||| || || |||| |||||||| ||||| || ||||| || Sbjct 1113175 GCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTC 1113116 Query 134615 TTTTTCTTG 134623 || || || Sbjct 1113115 CTTGTCCTG 1113107 Score = 91.5 bits (100), Expect = 1e-13 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCCAACGGTGTG 134554 || |||| ||| ||||| || ||||| ||||| || |||||||||| ||||| | ||| | Sbjct 1113739 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGC-GTGCG 1113681 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 ||| || ||||| ||||| || || |||| |||||||| ||||| || ||||| || Sbjct 1113680 GCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTC 1113621 Query 134615 TTTTTCTTG 134623 || || || Sbjct 1113620 CTTGTCCTG 1113612 >seq242 Length=371688 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCCAACGGTGTG 134554 || |||| ||| ||||| || ||||| ||||| || |||||||||| ||||| | ||| | Sbjct 197804 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGC-GTGCG 197862 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 ||| || ||||| ||||| || || |||| |||||||| || || || ||||| || Sbjct 197863 GCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTC 197922 Query 134615 TTTTTCTTG 134623 || || || Sbjct 197923 CTTGTCCTG 197931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505396498438520