Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micractinium_20conductrix_20[genbank_20GCA_5F002245815.1_202017-08- 10] 301 sequences; 61,020,757 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq52 792 0.0 >seq52 Length=149364 Score = 792 bits (878), Expect = 0.0 Identities = 771/992 (78%), Gaps = 0/992 (0%) Strand=Plus/Minus Query 174459 TGGGATCAGTTTTGTTCCTGGGTCACATCAACCAACAATCGTCTTTACGTCGGTTGGTTC 174518 |||| || |||||| ||||| || || | || ||| | ||| |||||||||| Sbjct 86198 TGGGCTCGTTTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTT 86139 Query 174519 GGTGTTCTAATGATTCCTACATTGTTAGCCGCAACTGTATGTTTCATTATCGCTTTCGTG 174578 ||||| ||||||| ||||| || ||| | || ||| | || || ||||| || | Sbjct 86138 GGTGTGTTAATGATCCCTACTTTATTAACAGCTACTTCAGTATTTATCATCGCATTTATC 86079 Query 174579 GGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAACCAGTAGCTGGTTCACTCATGTAT 174638 | ||||| || || || ||||| || |||||||| || || | |||||| | | ||| Sbjct 86078 GCAGCTCCGCCTGTCGATATCGATGGTATCCGTGAGCCTGTTTCAGGTTCATTACTATAT 86019 Query 174639 GGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACACTTC 174698 |||||||| |||||| ||||||| || |||| | ||| ||||| |||||| |||||||| Sbjct 86018 GGAAACAATATCATCACTGGTGCTATTATTCCAACTTCTAACGCTATCGGTTTACACTTC 85959 Query 174699 TACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACAACGGTGGTCCTTTCCAA 174758 |||||||| ||||||||||| | || || || ||| | ||||| |||||||||| |||| Sbjct 85958 TACCCAATTTGGGAAGCAGCTTCTCTTGATGAGTGGTTATACAATGGTGGTCCTTACCAA 85899 Query 174759 CTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCCTATATGGGACGTGAGTGGGAACTC 174818 || | || | ||| ||| | | || | | | || ||||| |||||||||||| | Sbjct 85898 CTTATCGTTTGCCATTTCTTCTTAGGCGTTTGTTCATACATGGGTCGTGAGTGGGAATTA 85839 Query 174819 TCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGCACCAGTTGCAGCA 174878 |||| ||||||||||||| | ||||||||| || || ||||| ||||||||||| ||| Sbjct 85838 TCTTTTCGTTTAGGTATGCGTCCTTGGATCGCAGTTGCTTACTCAGCACCAGTTGCTGCA 85779 Query 174879 GCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCAGACGCGATGCCC 174938 ||| |||| |||||| | | ||||| ||||||||||||| ||||| || | ||||| Sbjct 85778 GCTACAGCTGTATTCATCATTTATCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCT 85719 Query 174939 TTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAACATCTTG 174998 || ||||||||||| || ||||||| |||| | || |||||||| || || |||||| | Sbjct 85718 TTAGGTATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTT 85659 Query 174999 ATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTCTCAGCG 175058 |||||||| ||||| ||| | || || || ||||| || ||||||||||| ||||| || Sbjct 85658 ATGCACCCATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCT 85599 Query 175059 ATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACTGAAACTGAGTCACAG 175118 ||||| ||||||||||| || ||||| | | ||||| |||||||||| || ||| Sbjct 85598 ATGCACGGTTCACTTGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCAGCT 85539 Query 175119 AACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCATGGC 175178 ||| | |||||||| ||||| ||||||||||| || || |||||||| ||||| |||||| Sbjct 85538 AACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCATGGC 85479 Query 175179 TACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCCACTTC 175238 |||||||||||||| || |||||||| ||||| ||||||||||| || ||| | || ||| Sbjct 85478 TACTTCGGTCGTTTAATTTTCCAATATGCTTCTTTCAACAACTCTCGTTCATTACATTTC 85419 Query 175239 TTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCACAATG 175298 |||||||| || ||||||||||| ||||| |||||||| || | ||| |||| || ||| Sbjct 85418 TTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATG 85359 Query 175299 GCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAGAGTA 175358 ||||||||| | |||||||||||||||||||| || ||| | || ||||||| | ||| Sbjct 85358 GCATTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTA 85299 Query 175359 TTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATGCATGAG 175418 | ||||| ||||| || || | ||| | || ||||| |||||||||||||||||| Sbjct 85298 ATCAACACTTGGGCAGACATTATCAACCGTGCCAACCTTGGTATGGAAGTAATGCATGAG 85239 Query 175419 AGAAATGCACACAACTTCCCACTAGATTTGGC 175450 | || || |||||||||||| ||||||| || Sbjct 85238 CGTAACGCTCACAACTTCCCATTAGATTTAGC 85207 Score = 372 bits (412), Expect = 4e-98 Identities = 513/714 (72%), Gaps = 4/714 (1%) Strand=Plus/Minus Query 175838 AACGAGGGGGTGGTATGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTAT 175897 ||||||| |||| |||| | | || |||||||||| | || | || ||||| | Sbjct 18103 AACGAGGT--TGGTTTGATGTAGTAGATGACTGGCTTCGTCGTGACCGTTTCGTCTTTCT 18046 Query 175898 TGGCTGGTCTGGATTACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTAC 175957 || ||||| || ||| || | | || || || || || || |||| || ||| |||| Sbjct 18045 AGGATGGTCAGGGTTATTATTATTGCCTACAGCATACCTGGCACTTGGTGGTTGGTTTAC 17986 Query 175958 TGGCACAACTTTTGTCACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGG 176017 || || || ||||| ||| |||||| || |||||| | || ||||| ||| | || || Sbjct 17985 AGGAACTACATTTGTAACGTCTTGGTATACTCATGGTTTAGCATCTTCATATTTAGAAGG 17926 Query 176018 TGCTAACTTTCTCACAGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCT 176077 ||| || | ||||| ||||| || ||||| || || ||||||||||||| | | Sbjct 17925 ATGTAATTTCTTAACAGCAGCTGTTTCAACTCCAGCGAATAGTATGGGTCATTCTTTATT 17866 Query 176078 TCTACTTTGGGGTCCTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCT 176137 | |||||||| || ||| |||| ||||| ||| || ||| |||||||| || || Sbjct 17865 ATTCCTTTGGGGCCCAGAAGCTCAAGGCGATTTCACACGTTGGTGTCAACTTGGTGGTCT 17806 Query 176138 TTGGTCCTTTGTTGCTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTT 176197 ||| | ||||||||||| |||||||| || ||||||||||| || |||||||||||||| Sbjct 17805 ATGGACGTTTGTTGCTCTTCACGGTGCATTTGCTCTGATTGGTTTTATGCTTCGTCAGTT 17746 Query 176198 TGAACTGGCAAGACTCA-TTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTA 176256 |||| | ||| | ||| | || || || |||||||| |||||||| | || | Sbjct 17745 TGAAATTGCACG-TTCAGTAAAGATTCGCCCTTACAACGCAATTGCATTTTCAGCACCAA 17687 Query 176257 TCGCTGTATTTGTCAGTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTG 176316 | ||||||| || ||| || | | ||||| |||| |||||| |||||||||| Sbjct 17686 TTTCTGTATTCGTTTCTGTATTCTTAATTTACCCTTTAGGACAATCTGGTTGGTTCTTTG 17627 Query 176317 CCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACA 176376 | || ||||||||| || ||||| || ||||| | || || | || |||||||| | Sbjct 17626 CACCAAGCTTTGGTGTTGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATA 17567 Query 176377 ACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTAC 176436 ||||||| | ||||| |||||||||||||| || || ||| |||| || | || |||| Sbjct 17566 ACTGGACTTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGAGCTGCTCTAC 17507 Query 176437 TATCTGCAATCCATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACA 176496 | | |||||| ||||||| ||||| |||||||| || | ||| ||||| || | Sbjct 17506 TTTGTGCAATTCATGGCGCAACTGTAGAAAATACGCTTTTTGAGGATGGTGATGGTGCAA 17447 Query 176497 ACACCTTCACTGCGTTCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTA 176550 |||| ||| ||| || | | || || | ||||| || || || ||||||| Sbjct 17446 ACACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACATACTCAATGGTTA 17393 Score = 372 bits (412), Expect = 4e-98 Identities = 513/714 (72%), Gaps = 4/714 (1%) Strand=Plus/Minus Query 175838 AACGAGGGGGTGGTATGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTAT 175897 ||||||| |||| |||| | | || |||||||||| | || | || ||||| | Sbjct 147548 AACGAGGT--TGGTTTGATGTAGTAGATGACTGGCTTCGTCGTGACCGTTTCGTCTTTCT 147491 Query 175898 TGGCTGGTCTGGATTACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTAC 175957 || ||||| || ||| || | | || || || || || || |||| || ||| |||| Sbjct 147490 AGGATGGTCAGGGTTATTATTATTGCCTACAGCATACCTGGCACTTGGTGGTTGGTTTAC 147431 Query 175958 TGGCACAACTTTTGTCACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGG 176017 || || || ||||| ||| |||||| || |||||| | || ||||| ||| | || || Sbjct 147430 AGGAACTACATTTGTAACGTCTTGGTATACTCATGGTTTAGCATCTTCATATTTAGAAGG 147371 Query 176018 TGCTAACTTTCTCACAGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCT 176077 ||| || | ||||| ||||| || ||||| || || ||||||||||||| | | Sbjct 147370 ATGTAATTTCTTAACAGCAGCTGTTTCAACTCCAGCGAATAGTATGGGTCATTCTTTATT 147311 Query 176078 TCTACTTTGGGGTCCTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCT 176137 | |||||||| || ||| |||| ||||| ||| || ||| |||||||| || || Sbjct 147310 ATTCCTTTGGGGCCCAGAAGCTCAAGGCGATTTCACACGTTGGTGTCAACTTGGTGGTCT 147251 Query 176138 TTGGTCCTTTGTTGCTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTT 176197 ||| | ||||||||||| |||||||| || ||||||||||| || |||||||||||||| Sbjct 147250 ATGGACGTTTGTTGCTCTTCACGGTGCATTTGCTCTGATTGGTTTTATGCTTCGTCAGTT 147191 Query 176198 TGAACTGGCAAGACTCA-TTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTA 176256 |||| | ||| | ||| | || || || |||||||| |||||||| | || | Sbjct 147190 TGAAATTGCACG-TTCAGTAAAGATTCGCCCTTACAACGCAATTGCATTTTCAGCACCAA 147132 Query 176257 TCGCTGTATTTGTCAGTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTG 176316 | ||||||| || ||| || | | ||||| |||| |||||| |||||||||| Sbjct 147131 TTTCTGTATTCGTTTCTGTATTCTTAATTTACCCTTTAGGACAATCTGGTTGGTTCTTTG 147072 Query 176317 CCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACA 176376 | || ||||||||| || ||||| || ||||| | || || | || |||||||| | Sbjct 147071 CACCAAGCTTTGGTGTTGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATA 147012 Query 176377 ACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTAC 176436 ||||||| | ||||| |||||||||||||| || || ||| |||| || | || |||| Sbjct 147011 ACTGGACTTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGAGCTGCTCTAC 146952 Query 176437 TATCTGCAATCCATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACA 176496 | | |||||| ||||||| ||||| |||||||| || | ||| ||||| || | Sbjct 146951 TTTGTGCAATTCATGGCGCAACTGTAGAAAATACGCTTTTTGAGGATGGTGATGGTGCAA 146892 Query 176497 ACACCTTCACTGCGTTCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTA 176550 |||| ||| ||| || | | || || | ||||| || || || ||||||| Sbjct 146891 ACACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACATACTCAATGGTTA 146838 Score = 183 bits (202), Expect = 4e-41 Identities = 232/315 (74%), Gaps = 8/315 (3%) Strand=Plus/Minus Query 176550 ACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTT 176609 ||||| || || |||||||| ||||| || || || || ||| ||||| |||||| | Sbjct 16348 ACTGCAAATCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAATAAACGTTGGTTA 16289 Query 176610 CACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAGT---ATTGGCATC 176666 |||||||||||||| ||||| || || | ||||||||| | ||| ||||| | Sbjct 16288 CACTTCTTTATGTTATTTGTTCCGGTAACTGGTCTTTGGATG---AGTGCAATTGGTGTA 16232 Query 176667 ATTGGGCTTGCTCTTAATCTT-CGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGC 176725 | || | ||| |||| ||| ||||| |||||||| || ||||| ||| | || || Sbjct 16231 GTAGGTTTAGCT-TTAAACTTACGTGCGTATGATTTCGTTTCACAAGAAATTCGCGCTGC 16173 Query 176726 AGAAGATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAG 176785 ||||||||||| |||||||||||||| ||||| || || ||| | |||||||| | | Sbjct 16172 GGAAGATCCTGAATTTGAAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCG 16113 Query 176786 AGCATGGATGGCACCTGTGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCT 176845 || |||||||| || ||||| || ||||| | |||||||||| || || ||| | Sbjct 16112 TGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTT 16053 Query 176846 ACCTAGAGGTAACGC 176860 ||| | || ||||| Sbjct 16052 ACCACGTGGAAACGC 16038 Score = 183 bits (202), Expect = 4e-41 Identities = 232/315 (74%), Gaps = 8/315 (3%) Strand=Plus/Minus Query 176550 ACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTT 176609 ||||| || || |||||||| ||||| || || || || ||| ||||| |||||| | Sbjct 145793 ACTGCAAATCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAATAAACGTTGGTTA 145734 Query 176610 CACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAGT---ATTGGCATC 176666 |||||||||||||| ||||| || || | ||||||||| | ||| ||||| | Sbjct 145733 CACTTCTTTATGTTATTTGTTCCGGTAACTGGTCTTTGGATG---AGTGCAATTGGTGTA 145677 Query 176667 ATTGGGCTTGCTCTTAATCTT-CGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGC 176725 | || | ||| |||| ||| ||||| |||||||| || ||||| ||| | || || Sbjct 145676 GTAGGTTTAGCT-TTAAACTTACGTGCGTATGATTTCGTTTCACAAGAAATTCGCGCTGC 145618 Query 176726 AGAAGATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAG 176785 ||||||||||| |||||||||||||| ||||| || || ||| | |||||||| | | Sbjct 145617 GGAAGATCCTGAATTTGAAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCG 145558 Query 176786 AGCATGGATGGCACCTGTGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCT 176845 || |||||||| || ||||| || ||||| | |||||||||| || || ||| | Sbjct 145557 TGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTT 145498 Query 176846 ACCTAGAGGTAACGC 176860 ||| | || ||||| Sbjct 145497 ACCACGTGGAAACGC 145483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729926853639880