Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micractinium_20conductrix_20[genbank_20GCA_5F002245815.1_202017-08- 10] 301 sequences; 61,020,757 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq280 107 2e-18 seq286 104 3e-17 seq242 98.7 1e-15 >seq280 Length=4282644 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||||||||| || || || ||||||||||| || || || || || ||||| || Sbjct 2002160 CAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTG 2002101 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 ||||| | || || || || ||||| || |||| ||||| ||||| || || || || Sbjct 2002100 GAGGACGGCCGCACGCTGGCGGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTG 2002041 Query 27616 TTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| Sbjct 2002040 CTGCGCCTTCGCGGTGG 2002024 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||||||||| || || || ||||||||||| || || || || || ||||| || Sbjct 2002715 CAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTG 2002656 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 ||||| | || || || || ||||| || |||| ||||| ||||| || || || || Sbjct 2002655 GAGGACGGCCGCACGCTGGCGGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTG 2002596 Query 27616 TTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| Sbjct 2002595 CTGCGCCTTCGCGGTGG 2002579 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||||||||| || || || ||||||||||| || || || || || ||||| || Sbjct 2003270 CAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTG 2003211 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 ||||| | || || || || ||||| || |||| ||||| ||||| || || || || Sbjct 2003210 GAGGACGGCCGCACGCTGGCGGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTG 2003151 Query 27616 TTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| Sbjct 2003150 CTGCGCCTTCGCGGTGG 2003134 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||||||||| || || || ||||||||||| || || || || || ||||| || Sbjct 2001605 CAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTG 2001546 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 ||||| | || || || || ||||| || |||| ||||| ||||| || || || || Sbjct 2001545 GAGGACGGCCGCACGCTGGCGGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTG 2001486 Query 27616 TTGCGTCTTCGCGGTGGACA 27635 |||| || ||||| || || Sbjct 2001485 CTGCGCCTGCGCGGCGGCCA 2001466 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || ||||||||||| || || || || || ||||| || ||||| | || Sbjct 2003818 GGCATCCCGCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCCGC 2003759 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || || ||||| || |||| ||||| ||||| || || || || |||| |||||| Sbjct 2003758 ACGCTGGCGGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTTCGC 2003699 Query 27628 GGTGG 27632 ||||| Sbjct 2003698 GGTGG 2003694 >seq286 Length=1206827 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||||||||| || || || ||||||||||| || || || || || ||||| || Sbjct 1113107 CAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTG 1113166 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 ||||| | || || || |||||||| || |||| ||||| ||||| || || || || Sbjct 1113167 GAGGACGGCCGCACGCTGGCAGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTG 1113226 Query 27616 TTGCGTCTTCGCGGTGG 27632 |||| || ||||| || Sbjct 1113227 CTGCGCCTGCGCGGCGG 1113243 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||||||||| || || || ||||||||||| || || || || || ||||| || Sbjct 1113612 CAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTG 1113671 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 ||||| | || || || || ||||| || |||| ||||| ||||| || || || || Sbjct 1113672 GAGGACGGCCGCACGCTGGCGGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTG 1113731 Query 27616 TTGCGTCTTCGCGGTGG 27632 |||| || ||||| || Sbjct 1113732 CTGCGCCTGCGCGGCGG 1113748 >seq242 Length=371688 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||||||||| || || || ||||||||||| || || || || || ||||| || Sbjct 197931 CAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTG 197872 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 ||||| | || || || || ||||| || |||| ||||| ||||| || || || || Sbjct 197871 GAGGACGGCCGCACGCTGGCGGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTG 197812 Query 27616 TTGCGTCTTCGCGGTGG 27632 |||| || ||||| || Sbjct 197811 CTGCGCCTGCGCGGCGG 197795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308254207120