Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micractinium_20conductrix_20[genbank_20GCA_5F002245815.1_202017-08- 10] 301 sequences; 61,020,757 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq242 113 1e-19 seq280 111 4e-19 seq286 107 4e-18 seq53 93.3 1e-13 >seq242 Length=371688 Score = 113 bits (124), Expect = 1e-19 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || ||||| || || | || || Sbjct 197810 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGGCCGTCC 197869 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| || |||||||| || | || ||||||||| Sbjct 197870 TCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 197929 Query 211023 TG 211024 || Sbjct 197930 TG 197931 >seq280 Length=4282644 Score = 111 bits (122), Expect = 4e-19 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || ||||| || |||||||| || |||||||| || ||||| || || Sbjct 2002030 CGAAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTG 2002089 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || |||||||||||||| |||||||| ||||| || ||||| || || | || Sbjct 2002090 CGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCC 2002149 Query 211014 TCCTTGTCCTG 211024 ||||||||||| Sbjct 2002150 TCCTTGTCCTG 2002160 Score = 111 bits (122), Expect = 4e-19 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || ||||| || |||||||| || |||||||| || ||||| || || Sbjct 2002585 CGAAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTG 2002644 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || |||||||||||||| |||||||| ||||| || ||||| || || | || Sbjct 2002645 CGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCC 2002704 Query 211014 TCCTTGTCCTG 211024 ||||||||||| Sbjct 2002705 TCCTTGTCCTG 2002715 Score = 111 bits (122), Expect = 4e-19 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || ||||| || |||||||| || |||||||| || ||||| || || Sbjct 2003140 CGAAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTG 2003199 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || |||||||||||||| |||||||| ||||| || ||||| || || | || Sbjct 2003200 CGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCC 2003259 Query 211014 TCCTTGTCCTG 211024 ||||||||||| Sbjct 2003260 TCCTTGTCCTG 2003270 Score = 107 bits (118), Expect = 4e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || ||||| || || | || || Sbjct 2001484 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGGCCGTCC 2001543 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 2001544 TCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 2001603 Query 211023 TG 211024 || Sbjct 2001604 TG 2001605 Score = 96.9 bits (106), Expect = 8e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || ||||| || |||||||| || |||||||| || ||||| || || Sbjct 2003700 CGAAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTG 2003759 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 | || || |||||||||||||| |||||||| ||||| || ||||| || || Sbjct 2003760 CGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGG 2003812 >seq286 Length=1206827 Score = 107 bits (118), Expect = 4e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || ||||| || || | || || Sbjct 1113733 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGGCCGTCC 1113674 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 1113673 TCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 1113614 Query 211023 TG 211024 || Sbjct 1113613 TG 1113612 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || || || || | || || Sbjct 1113228 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGCGTGCGGCCGTCC 1113169 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 1113168 TCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 1113109 Query 211023 TG 211024 || Sbjct 1113108 TG 1113107 >seq53 Length=124359 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || ||||| || || | || || Sbjct 80687 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGGCCGTCC 80746 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 |||||||||||||| |||||||| ||||| || ||||| || || Sbjct 80747 TCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGG 80790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159147529657865