Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micractinium_20conductrix_20[genbank_20GCA_5F002245815.1_202017-08- 10] 301 sequences; 61,020,757 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq71 109 1e-18 seq52 100 7e-16 seq280 96.9 8e-15 seq15 84.2 5e-11 >seq71 Length=95661 Score = 109 bits (120), Expect = 1e-18 Identities = 82/95 (86%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 370681 ACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGATGGATCAAA 370740 ||| ||||| |||||||||||||||||||| |||||||| || || |||| |||||||| Sbjct 64479 ACCGAAAAACCAGAATAAATGTTGATAAAGAATAGGATCCCCACCACCTGCAGGATCAAA 64420 Query 370741 AAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 || ||||||| ||||||||||||||||| |||| Sbjct 64419 GAATGTAGTATTGAAATTTCTATCAGTTAACAACA 64385 Score = 105 bits (116), Expect = 2e-17 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 372630 ACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGTAAAACG 372689 ||| || || |||| ||||||||||| |||||||||||||||| ||||||| |||| ||| Sbjct 8725 ACAAAAGAGGGGGTGGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACG 8666 Query 372690 ATGTATAGGGTCTGACAC 372707 |||||||||||||||||| Sbjct 8665 ATGTATAGGGTCTGACAC 8648 Score = 105 bits (116), Expect = 2e-17 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 372630 ACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGTAAAACG 372689 ||| || || |||| ||||||||||| |||||||||||||||| ||||||| |||| ||| Sbjct 83739 ACAAAAGAGGGGGTGGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACG 83680 Query 372690 ATGTATAGGGTCTGACAC 372707 |||||||||||||||||| Sbjct 83679 ATGTATAGGGTCTGACAC 83662 Score = 102 bits (112), Expect = 2e-16 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| || |||||||| |||||||| || || |||||||| |||||||| ||||||||||| Sbjct 50835 GAAAATCTGACCATCTGTAATAGAAATCACGTTTGTAGGAATATAAGCTGAAACATCACC 50776 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTT 4583 ||||| ||||| | || || | ||||| || || |||||||| | || ||| Sbjct 50775 AGCTTGAGTTTCAATTACTGGAAGTGCTGTCAGAGAACCACCACCTACATCTTT 50722 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 5014 CAACACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATA 5073 || || | |||| | | || ||||| |||| |||| ||| || |||||||| |||| | Sbjct 50501 CACCATTACAATTCTTAGCACCATATTCAGGGTGTGCTATGGGTGAATATTTCCGAGACA 50560 Query 5074 ATGGTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAAT 5118 |||| | ||||||||||| ||||| ||||||||||||||||||| Sbjct 50561 ATGGAATGCATGCTTTAATTATCTATGATGATTTAAGTAAACAAT 50605 Score = 93.3 bits (102), Expect = 1e-13 Identities = 113/153 (74%), Gaps = 6/153 (4%) Strand=Plus/Minus Query 7723 TTATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCG 7782 |||| || ||| ||||||| || | ||||| | || ||||||||||||| |||||| Sbjct 72802 TTATGTCAAGGACTGGTAAGGTTTTGCGCGTTGTTTCGAATTAAACCACATGTTCCACCA 72743 Query 7783 CTTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTG 7842 ||| | | | ||||| || |||||||||||| |||||| |||| | |||||| | Sbjct 72742 CTTGTGTGAGCCCCCGTCTATTCCTTTGAGTTTTAGTCTTGCGACCGTACTCCTCAGGCG 72683 Query 7843 GA-ATATTTACGCGTTAGCTTAATTAATATAAA 7874 || | || |||||||||| ||||||||| Sbjct 72682 GACCTTTTAACGCGTTAGC-----TAATATAAA 72655 >seq52 Length=149364 Score = 100 bits (110), Expect = 7e-16 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| || |||||||| || |||||||| || |||||||| |||||||||||||| Sbjct 7761 GAAAATTTGTCCGTCAGTAATTGAAATAACATTAGTTGGGATATATGCAGAAACATCACC 7820 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGT 4559 | |||| ||||| ||||| ||||| || || Sbjct 7821 TTCTTGAGTTTCAACAACCGGTAATGCAGT 7850 Score = 100 bits (110), Expect = 7e-16 Identities = 99/127 (78%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| ||| ||||||||||||| ||||||||||| | | | Sbjct 115193 TGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 115252 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | |||||| | || | | |||| || ||| || |||| Sbjct 115253 CCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCATACTCCCCAGGCGGGATACTTCACGC 115312 Query 7855 GTTAGCT 7861 ||||||| Sbjct 115313 GTTAGCT 115319 Score = 100 bits (110), Expect = 7e-16 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| || |||||||| || |||||||| || |||||||| |||||||||||||| Sbjct 137206 GAAAATTTGTCCGTCAGTAATTGAAATAACATTAGTTGGGATATATGCAGAAACATCACC 137265 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGT 4559 | |||| ||||| ||||| ||||| || || Sbjct 137266 TTCTTGAGTTTCAACAACCGGTAATGCAGT 137295 Score = 86.0 bits (94), Expect = 1e-11 Identities = 89/113 (79%), Gaps = 3/113 (3%) Strand=Plus/Minus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||| ||||||||| | |||||||| | || ||| | ||||| Sbjct 116905 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAG 116847 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGA 6878 ||||| |||| || |||||||||||||| ||| ||| |||| ||||| Sbjct 116846 CAGTGAGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGA 116794 >seq280 Length=4282644 Score = 96.9 bits (106), Expect = 8e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||| || ||||| || ||||| || || |||| ||||| || |||| || Sbjct 2002030 CGAAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTG 2002089 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || |||||||| || || || ||||||||||| || || Sbjct 2002090 CGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCC 2002149 Query 225613 TCCTTGTCTTG 225623 |||||||| || Sbjct 2002150 TCCTTGTCCTG 2002160 Score = 96.9 bits (106), Expect = 8e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||| || ||||| || ||||| || || |||| ||||| || |||| || Sbjct 2002585 CGAAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTG 2002644 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || |||||||| || || || ||||||||||| || || Sbjct 2002645 CGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCC 2002704 Query 225613 TCCTTGTCTTG 225623 |||||||| || Sbjct 2002705 TCCTTGTCCTG 2002715 Score = 96.9 bits (106), Expect = 8e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||| || ||||| || ||||| || || |||| ||||| || |||| || Sbjct 2003140 CGAAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTG 2003199 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || |||||||| || || || ||||||||||| || || Sbjct 2003200 CGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCC 2003259 Query 225613 TCCTTGTCTTG 225623 |||||||| || Sbjct 2003260 TCCTTGTCCTG 2003270 Score = 93.3 bits (102), Expect = 1e-13 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| || ||||| || || |||| ||||| || |||| || Sbjct 2001475 CGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTG 2001534 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || |||||||| || || || ||||||||||| || || Sbjct 2001535 CGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCC 2001594 Query 225613 TCCTTGTCTTG 225623 |||||||| || Sbjct 2001595 TCCTTGTCCTG 2001605 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||| || ||||| || ||||| || || |||| ||||| || |||| || Sbjct 2003700 CGAAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTG 2003759 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || |||||||| || || || ||||||||||| || ||| Sbjct 2003760 CGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCT 2003819 >seq15 Length=730215 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| || |||||||| |||||||| || || |||||||| |||||||| ||||||||||| Sbjct 299223 GAAAATCTGACCATCTGTAATAGAAATCACGTTTGTAGGAATATAAGCTGAAACATCACC 299282 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCC 4568 |||| ||||| | || || | ||||| || || || Sbjct 299283 ATCTTGAGTTTCAATTACTGGAAGTGCTGTCAGAGAACC 299321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192526600928894